Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00174

Experiment: iri MOI1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOHPLBJKB_00173 and OHPLBJKB_00174 are separated by 182 nucleotidesOHPLBJKB_00174 and OHPLBJKB_00175 are separated by 220 nucleotides OHPLBJKB_00173: OHPLBJKB_00173 - putative cyclic di-GMP phosphodiesterase PdeK, at 184,010 to 185,959 _00173 OHPLBJKB_00174: OHPLBJKB_00174 - Aerobic C4-dicarboxylate transport protein, at 186,142 to 187,428 _00174 OHPLBJKB_00175: OHPLBJKB_00175 - Protein YhjJ, at 187,649 to 189,145 _00175 Position (kb) 186 187 188Strain fitness (log2 ratio) -2 -1 0 1at 185.704 kb on + strand, within OHPLBJKB_00173at 185.705 kb on - strand, within OHPLBJKB_00173at 185.727 kb on + strand, within OHPLBJKB_00173at 185.728 kb on - strand, within OHPLBJKB_00173at 185.791 kb on + strandat 185.792 kb on - strandat 185.792 kb on - strandat 185.818 kb on - strandat 185.884 kb on + strandat 185.943 kb on - strandat 186.041 kb on + strandat 186.052 kb on + strandat 186.141 kb on + strandat 186.141 kb on + strandat 186.160 kb on - strandat 186.170 kb on - strandat 186.201 kb on + strandat 186.221 kb on - strandat 186.231 kb on - strandat 186.314 kb on + strand, within OHPLBJKB_00174at 186.379 kb on + strand, within OHPLBJKB_00174at 186.412 kb on - strand, within OHPLBJKB_00174at 186.420 kb on + strand, within OHPLBJKB_00174at 186.420 kb on + strand, within OHPLBJKB_00174at 186.420 kb on + strand, within OHPLBJKB_00174at 186.420 kb on + strand, within OHPLBJKB_00174at 186.420 kb on + strand, within OHPLBJKB_00174at 186.421 kb on - strand, within OHPLBJKB_00174at 186.421 kb on - strand, within OHPLBJKB_00174at 186.421 kb on - strand, within OHPLBJKB_00174at 186.421 kb on - strand, within OHPLBJKB_00174at 186.585 kb on + strand, within OHPLBJKB_00174at 186.711 kb on + strand, within OHPLBJKB_00174at 186.732 kb on + strand, within OHPLBJKB_00174at 186.733 kb on - strand, within OHPLBJKB_00174at 186.768 kb on + strand, within OHPLBJKB_00174at 186.768 kb on + strand, within OHPLBJKB_00174at 186.820 kb on + strand, within OHPLBJKB_00174at 186.820 kb on + strand, within OHPLBJKB_00174at 186.820 kb on + strand, within OHPLBJKB_00174at 186.825 kb on + strand, within OHPLBJKB_00174at 186.825 kb on + strand, within OHPLBJKB_00174at 186.825 kb on + strand, within OHPLBJKB_00174at 186.825 kb on + strand, within OHPLBJKB_00174at 186.826 kb on - strand, within OHPLBJKB_00174at 186.885 kb on + strand, within OHPLBJKB_00174at 186.904 kb on + strand, within OHPLBJKB_00174at 186.966 kb on + strand, within OHPLBJKB_00174at 187.000 kb on - strand, within OHPLBJKB_00174at 187.041 kb on + strand, within OHPLBJKB_00174at 187.061 kb on + strand, within OHPLBJKB_00174at 187.062 kb on - strand, within OHPLBJKB_00174at 187.063 kb on + strand, within OHPLBJKB_00174at 187.063 kb on + strand, within OHPLBJKB_00174at 187.063 kb on + strand, within OHPLBJKB_00174at 187.064 kb on - strand, within OHPLBJKB_00174at 187.064 kb on - strand, within OHPLBJKB_00174at 187.064 kb on - strand, within OHPLBJKB_00174at 187.064 kb on - strand, within OHPLBJKB_00174at 187.064 kb on - strand, within OHPLBJKB_00174at 187.086 kb on + strand, within OHPLBJKB_00174at 187.140 kb on - strand, within OHPLBJKB_00174at 187.140 kb on - strand, within OHPLBJKB_00174at 187.161 kb on + strand, within OHPLBJKB_00174at 187.162 kb on - strand, within OHPLBJKB_00174at 187.276 kb on - strand, within OHPLBJKB_00174at 187.299 kb on + strand, within OHPLBJKB_00174at 187.339 kb on - strandat 187.339 kb on - strandat 187.386 kb on + strandat 187.418 kb on + strandat 187.419 kb on - strandat 187.419 kb on - strandat 187.419 kb on - strandat 187.426 kb on + strandat 187.426 kb on + strandat 187.426 kb on + strandat 187.427 kb on - strandat 187.439 kb on + strandat 187.439 kb on + strandat 187.439 kb on + strandat 187.439 kb on + strandat 187.439 kb on + strandat 187.440 kb on - strandat 187.440 kb on - strandat 187.440 kb on - strandat 187.479 kb on + strandat 187.480 kb on - strandat 187.480 kb on - strandat 187.480 kb on - strandat 187.503 kb on - strandat 187.525 kb on + strandat 187.592 kb on - strandat 187.630 kb on + strandat 187.630 kb on + strandat 187.630 kb on + strandat 187.631 kb on - strandat 187.631 kb on - strandat 187.709 kb on + strandat 187.773 kb on + strandat 187.773 kb on + strandat 187.861 kb on + strand, within OHPLBJKB_00175at 187.862 kb on - strand, within OHPLBJKB_00175at 187.862 kb on - strand, within OHPLBJKB_00175at 188.000 kb on + strand, within OHPLBJKB_00175at 188.069 kb on + strand, within OHPLBJKB_00175at 188.069 kb on + strand, within OHPLBJKB_00175at 188.070 kb on - strand, within OHPLBJKB_00175at 188.167 kb on + strand, within OHPLBJKB_00175at 188.168 kb on - strand, within OHPLBJKB_00175at 188.168 kb on - strand, within OHPLBJKB_00175at 188.211 kb on + strand, within OHPLBJKB_00175at 188.211 kb on + strand, within OHPLBJKB_00175at 188.211 kb on + strand, within OHPLBJKB_00175

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction iri MOI1
remove
185,704 + OHPLBJKB_00173 0.87 -0.3
185,705 - OHPLBJKB_00173 0.87 +0.5
185,727 + OHPLBJKB_00173 0.88 -0.4
185,728 - OHPLBJKB_00173 0.88 -0.9
185,791 + +1.2
185,792 - -1.1
185,792 - +0.4
185,818 - -0.1
185,884 + +0.6
185,943 - +0.2
186,041 + -1.5
186,052 + +0.8
186,141 + +0.1
186,141 + +1.0
186,160 - -1.5
186,170 - +0.9
186,201 + -0.6
186,221 - -0.3
186,231 - -0.2
186,314 + OHPLBJKB_00174 0.13 +0.6
186,379 + OHPLBJKB_00174 0.18 +0.4
186,412 - OHPLBJKB_00174 0.21 +1.1
186,420 + OHPLBJKB_00174 0.22 -1.0
186,420 + OHPLBJKB_00174 0.22 -0.7
186,420 + OHPLBJKB_00174 0.22 +0.7
186,420 + OHPLBJKB_00174 0.22 +1.0
186,420 + OHPLBJKB_00174 0.22 -0.2
186,421 - OHPLBJKB_00174 0.22 -0.9
186,421 - OHPLBJKB_00174 0.22 -1.5
186,421 - OHPLBJKB_00174 0.22 -1.1
186,421 - OHPLBJKB_00174 0.22 -0.3
186,585 + OHPLBJKB_00174 0.34 +0.2
186,711 + OHPLBJKB_00174 0.44 +1.5
186,732 + OHPLBJKB_00174 0.46 -0.8
186,733 - OHPLBJKB_00174 0.46 -1.3
186,768 + OHPLBJKB_00174 0.49 +0.8
186,768 + OHPLBJKB_00174 0.49 -0.3
186,820 + OHPLBJKB_00174 0.53 +0.1
186,820 + OHPLBJKB_00174 0.53 +0.5
186,820 + OHPLBJKB_00174 0.53 +0.6
186,825 + OHPLBJKB_00174 0.53 +0.0
186,825 + OHPLBJKB_00174 0.53 -0.8
186,825 + OHPLBJKB_00174 0.53 +0.6
186,825 + OHPLBJKB_00174 0.53 +0.0
186,826 - OHPLBJKB_00174 0.53 -0.5
186,885 + OHPLBJKB_00174 0.58 +0.4
186,904 + OHPLBJKB_00174 0.59 +0.4
186,966 + OHPLBJKB_00174 0.64 +0.7
187,000 - OHPLBJKB_00174 0.67 -0.4
187,041 + OHPLBJKB_00174 0.70 -0.5
187,061 + OHPLBJKB_00174 0.71 -0.4
187,062 - OHPLBJKB_00174 0.71 -1.7
187,063 + OHPLBJKB_00174 0.72 +0.5
187,063 + OHPLBJKB_00174 0.72 +0.6
187,063 + OHPLBJKB_00174 0.72 +0.2
187,064 - OHPLBJKB_00174 0.72 -0.1
187,064 - OHPLBJKB_00174 0.72 +0.1
187,064 - OHPLBJKB_00174 0.72 -0.0
187,064 - OHPLBJKB_00174 0.72 +0.8
187,064 - OHPLBJKB_00174 0.72 +0.3
187,086 + OHPLBJKB_00174 0.73 -0.0
187,140 - OHPLBJKB_00174 0.78 -0.8
187,140 - OHPLBJKB_00174 0.78 +1.0
187,161 + OHPLBJKB_00174 0.79 +0.5
187,162 - OHPLBJKB_00174 0.79 +0.0
187,276 - OHPLBJKB_00174 0.88 +0.9
187,299 + OHPLBJKB_00174 0.90 -0.5
187,339 - -0.4
187,339 - +0.2
187,386 + +0.3
187,418 + -0.9
187,419 - +0.4
187,419 - -0.7
187,419 - +0.1
187,426 + -0.6
187,426 + +0.3
187,426 + +0.3
187,427 - -0.2
187,439 + -1.1
187,439 + -0.4
187,439 + +0.8
187,439 + +1.0
187,439 + -0.9
187,440 - -0.2
187,440 - +0.7
187,440 - -0.1
187,479 + +0.6
187,480 - -0.4
187,480 - -0.3
187,480 - -0.5
187,503 - +0.3
187,525 + -0.1
187,592 - +0.2
187,630 + -0.3
187,630 + +0.3
187,630 + -1.8
187,631 - +0.7
187,631 - -0.1
187,709 + +0.6
187,773 + -0.2
187,773 + -0.2
187,861 + OHPLBJKB_00175 0.14 +0.5
187,862 - OHPLBJKB_00175 0.14 -0.6
187,862 - OHPLBJKB_00175 0.14 +0.5
188,000 + OHPLBJKB_00175 0.23 -0.1
188,069 + OHPLBJKB_00175 0.28 -0.2
188,069 + OHPLBJKB_00175 0.28 +1.5
188,070 - OHPLBJKB_00175 0.28 -0.5
188,167 + OHPLBJKB_00175 0.35 -0.5
188,168 - OHPLBJKB_00175 0.35 -2.0
188,168 - OHPLBJKB_00175 0.35 +0.1
188,211 + OHPLBJKB_00175 0.38 -0.3
188,211 + OHPLBJKB_00175 0.38 +0.3
188,211 + OHPLBJKB_00175 0.38 +0.4

Or see this region's nucleotide sequence