Strain Fitness in Escherichia fergusonii Becca around EFB2_04717

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
4,965,789	+		EFB2_04715	0.23	+1.0
4,965,790	-		EFB2_04715	0.23	+0.7
4,965,799	+		EFB2_04715	0.24	-2.3
4,965,799	+		EFB2_04715	0.24	-1.5
4,965,800	-		EFB2_04715	0.24	+0.6
4,965,800	-		EFB2_04715	0.24	-2.2
4,965,800	-		EFB2_04715	0.24	-0.5
4,965,800	-		EFB2_04715	0.24	-0.2
4,965,800	-		EFB2_04715	0.24	-0.4
4,965,800	-		EFB2_04715	0.24	+0.2
4,965,800	-		EFB2_04715	0.24	-0.7
4,965,800	-		EFB2_04715	0.24	-1.1
4,965,800	-		EFB2_04715	0.24	-0.1
4,965,809	-		EFB2_04715	0.25	-0.2
4,965,809	-		EFB2_04715	0.25	+1.4
4,965,809	-		EFB2_04715	0.25	+1.3
4,965,862	+		EFB2_04715	0.32	-0.5
4,965,862	+		EFB2_04715	0.32	-0.4
4,965,862	+		EFB2_04715	0.32	+0.8
4,965,863	-		EFB2_04715	0.32	+1.0
4,965,863	-		EFB2_04715	0.32	-0.8
4,965,867	+		EFB2_04715	0.32	+1.8
4,965,867	+		EFB2_04715	0.32	+0.8
4,965,867	+		EFB2_04715	0.32	+0.6
4,965,867	+		EFB2_04715	0.32	-0.4
4,965,867	+		EFB2_04715	0.32	+0.5
4,965,867	+		EFB2_04715	0.32	-1.6
4,965,867	+		EFB2_04715	0.32	-2.3
4,965,867	+		EFB2_04715	0.32	-0.2
4,965,867	+		EFB2_04715	0.32	+0.5
4,965,867	+		EFB2_04715	0.32	-1.7
4,965,867	+		EFB2_04715	0.32	-0.9
4,965,867	+		EFB2_04715	0.32	-0.3
4,965,867	+		EFB2_04715	0.32	-0.3
4,965,868	-		EFB2_04715	0.33	-0.1
4,965,868	-		EFB2_04715	0.33	-2.3
4,965,868	-		EFB2_04715	0.33	+0.4
4,965,868	-		EFB2_04715	0.33	-0.1
4,965,868	-		EFB2_04715	0.33	-0.1
4,965,876	+		EFB2_04715	0.34	-0.6
4,965,876	+		EFB2_04715	0.34	-0.6
4,965,876	+		EFB2_04715	0.34	-4.0
4,965,876	+		EFB2_04715	0.34	-0.6
4,965,877	-		EFB2_04715	0.34	-0.4
4,965,877	-		EFB2_04715	0.34	+0.2
4,965,877	-		EFB2_04715	0.34	+0.2
4,965,985	+		EFB2_04715	0.47	-0.4
4,965,986	-		EFB2_04715	0.47	+0.7
4,965,986	-		EFB2_04715	0.47	+0.3
4,966,052	+		EFB2_04715	0.55	+0.1
4,966,052	+		EFB2_04715	0.55	+0.3
4,966,052	+		EFB2_04715	0.55	-1.3
4,966,052	+		EFB2_04715	0.55	-1.0
4,966,052	+		EFB2_04715	0.55	-0.1
4,966,052	+		EFB2_04715	0.55	-0.9
4,966,052	+		EFB2_04715	0.55	+0.7
4,966,052	+		EFB2_04715	0.55	+2.1
4,966,052	+		EFB2_04715	0.55	-0.5
4,966,052	+		EFB2_04715	0.55	-0.6
4,966,052	+		EFB2_04715	0.55	+0.0
4,966,052	+		EFB2_04715	0.55	-1.0
4,966,052	+		EFB2_04715	0.55	-0.5
4,966,052	+		EFB2_04715	0.55	+0.8
4,966,053	-		EFB2_04715	0.55	-1.1
4,966,053	-		EFB2_04715	0.55	-0.2
4,966,053	-		EFB2_04715	0.55	+0.2
4,966,053	-		EFB2_04715	0.55	-2.0
4,966,053	-		EFB2_04715	0.55	-1.1
4,966,053	-		EFB2_04715	0.55	+1.9
4,966,053	-		EFB2_04715	0.55	+1.5
4,966,053	-		EFB2_04715	0.55	-0.1
4,966,053	-		EFB2_04715	0.55	-1.4
4,966,053	-		EFB2_04715	0.55	-1.3
4,966,053	-		EFB2_04715	0.55	+2.3
4,966,053	-		EFB2_04715	0.55	+0.6
4,966,122	+		EFB2_04715	0.63	+1.3
4,966,122	+		EFB2_04715	0.63	+0.4
4,966,122	+		EFB2_04715	0.63	+0.4
4,966,123	-		EFB2_04715	0.64	+0.4
4,966,123	-		EFB2_04715	0.64	+1.3
4,966,278	+		EFB2_04715	0.82	+0.0
4,966,308	+		EFB2_04715	0.86	+0.1
4,966,308	+		EFB2_04715	0.86	+2.0
4,966,308	+		EFB2_04715	0.86	+1.2
4,966,308	+		EFB2_04715	0.86	+0.5
4,966,308	+		EFB2_04715	0.86	+0.5
4,966,308	+		EFB2_04715	0.86	+0.2
4,966,308	+		EFB2_04715	0.86	+0.7
4,966,308	+		EFB2_04715	0.86	-0.1
4,966,308	+		EFB2_04715	0.86	+1.0
4,966,308	+		EFB2_04715	0.86	+0.4
4,966,308	+		EFB2_04715	0.86	+1.1
4,966,308	+		EFB2_04715	0.86	-1.6
4,966,308	+		EFB2_04715	0.86	-1.2
4,966,309	-		EFB2_04715	0.86	-0.6
4,966,309	-		EFB2_04715	0.86	-0.8
4,966,309	-		EFB2_04715	0.86	+0.3
4,966,309	-		EFB2_04715	0.86	+1.2
4,966,309	-		EFB2_04715	0.86	+0.0
4,966,309	-		EFB2_04715	0.86	+1.0
4,966,309	-		EFB2_04715	0.86	-2.5
4,966,309	-		EFB2_04715	0.86	-0.4
4,966,311	+		EFB2_04715	0.86	-2.7
4,966,312	-		EFB2_04715	0.86	+1.1
4,966,312	-		EFB2_04715	0.86	+0.4
4,966,394	-				-0.7
4,966,421	+				+0.5
4,966,421	+				-0.2
4,966,421	+				+1.1
4,966,422	-				+1.1
4,966,422	-				-0.5
4,966,422	-				-0.3
4,966,461	+				+0.7
4,966,461	+				+1.1
4,966,462	-				-1.1
4,966,462	-				+1.7
4,966,462	-				-1.4
4,966,484	+		EFB2_04716	0.16	-1.6
4,966,484	+		EFB2_04716	0.16	-0.5
4,966,484	+		EFB2_04716	0.16	+0.8
4,966,485	-		EFB2_04716	0.17	-2.8
4,966,485	-		EFB2_04716	0.17	+0.2
4,966,485	-		EFB2_04716	0.17	+0.7
4,966,485	-		EFB2_04716	0.17	-1.5
4,966,498	+		EFB2_04716	0.21	+0.5
4,966,498	+		EFB2_04716	0.21	-3.8
4,966,499	-		EFB2_04716	0.21	-1.5
4,966,499	-		EFB2_04716	0.21	-0.2
4,966,549	+		EFB2_04716	0.37	+2.0
4,966,549	+		EFB2_04716	0.37	+1.2
4,966,549	+		EFB2_04716	0.37	-0.2
4,966,549	+		EFB2_04716	0.37	-1.3
4,966,549	+		EFB2_04716	0.37	+0.2
4,966,549	+		EFB2_04716	0.37	+0.0
4,966,549	+		EFB2_04716	0.37	+0.7
4,966,550	-		EFB2_04716	0.37	+1.6
4,966,550	-		EFB2_04716	0.37	-0.8
4,966,550	-		EFB2_04716	0.37	+0.1
4,966,550	-		EFB2_04716	0.37	+0.5
4,966,550	-		EFB2_04716	0.37	+1.2
4,966,553	+		EFB2_04716	0.38	+0.6
4,966,553	+		EFB2_04716	0.38	+0.6
4,966,553	+		EFB2_04716	0.38	-0.8
4,966,553	+		EFB2_04716	0.38	-1.6
4,966,553	+		EFB2_04716	0.38	+0.7
4,966,553	+		EFB2_04716	0.38	-0.4
4,966,553	+		EFB2_04716	0.38	-0.9
4,966,553	+		EFB2_04716	0.38	+1.1
4,966,553	+		EFB2_04716	0.38	+0.3
4,966,553	+		EFB2_04716	0.38	+0.9
4,966,553	+		EFB2_04716	0.38	-2.4
4,966,553	+		EFB2_04716	0.38	+0.5
4,966,553	+		EFB2_04716	0.38	+0.9
4,966,553	+		EFB2_04716	0.38	-0.5
4,966,553	+		EFB2_04716	0.38	+1.0
4,966,553	+		EFB2_04716	0.38	-2.6
4,966,553	+		EFB2_04716	0.38	+0.0
4,966,553	+		EFB2_04716	0.38	+2.1
4,966,553	+		EFB2_04716	0.38	+0.2
4,966,553	+		EFB2_04716	0.38	+0.4
4,966,553	+		EFB2_04716	0.38	-1.7
4,966,553	+		EFB2_04716	0.38	+0.4
4,966,553	+		EFB2_04716	0.38	+0.6
4,966,553	+		EFB2_04716	0.38	-2.4
4,966,553	+		EFB2_04716	0.38	-0.8
4,966,553	+		EFB2_04716	0.38	+0.1
4,966,553	+		EFB2_04716	0.38	-0.4
4,966,553	+		EFB2_04716	0.38	-1.7
4,966,553	+		EFB2_04716	0.38	+0.6
4,966,553	+		EFB2_04716	0.38	+2.3
4,966,553	+		EFB2_04716	0.38	+0.3
4,966,553	+		EFB2_04716	0.38	+0.7
4,966,553	+		EFB2_04716	0.38	-0.6
4,966,553	+		EFB2_04716	0.38	-0.1
4,966,553	+		EFB2_04716	0.38	+2.0
4,966,553	+		EFB2_04716	0.38	-0.4
4,966,553	+		EFB2_04716	0.38	+1.0
4,966,553	+		EFB2_04716	0.38	-0.3
4,966,553	+		EFB2_04716	0.38	-0.3
4,966,553	+		EFB2_04716	0.38	+0.5
4,966,554	-		EFB2_04716	0.38	-2.7
4,966,554	-		EFB2_04716	0.38	+1.3
4,966,554	-		EFB2_04716	0.38	-0.4
4,966,554	-		EFB2_04716	0.38	+0.3
4,966,554	-		EFB2_04716	0.38	+0.2
4,966,554	-		EFB2_04716	0.38	-0.0
4,966,554	-		EFB2_04716	0.38	-1.0
4,966,554	-		EFB2_04716	0.38	+0.3
4,966,554	-		EFB2_04716	0.38	-0.2
4,966,554	-		EFB2_04716	0.38	-1.7
4,966,554	-		EFB2_04716	0.38	+0.7
4,966,554	-		EFB2_04716	0.38	+0.5
4,966,554	-		EFB2_04716	0.38	+0.8
4,966,554	-		EFB2_04716	0.38	-0.5
4,966,554	-		EFB2_04716	0.38	+0.7
4,966,554	-		EFB2_04716	0.38	-2.5
4,966,554	-		EFB2_04716	0.38	+0.4
4,966,554	-		EFB2_04716	0.38	-0.5
4,966,554	-		EFB2_04716	0.38	+0.5
4,966,554	-		EFB2_04716	0.38	+0.1
4,966,554	-		EFB2_04716	0.38	+3.3
4,966,554	-		EFB2_04716	0.38	-1.6
4,966,554	-		EFB2_04716	0.38	-0.1
4,966,554	-		EFB2_04716	0.38	-1.7
4,966,554	-		EFB2_04716	0.38	+1.6
4,966,554	-		EFB2_04716	0.38	+0.5
4,966,554	-		EFB2_04716	0.38	-1.4
4,966,554	-		EFB2_04716	0.38	-2.8
4,966,554	-		EFB2_04716	0.38	-0.0
4,966,554	-		EFB2_04716	0.38	-1.0
4,966,554	-		EFB2_04716	0.38	+1.4
4,966,554	-		EFB2_04716	0.38	-1.7
4,966,562	+		EFB2_04716	0.41	+0.1
4,966,562	+		EFB2_04716	0.41	-0.1
4,966,562	+		EFB2_04716	0.41	-0.7
4,966,562	+		EFB2_04716	0.41	+1.8
4,966,562	+		EFB2_04716	0.41	+0.8
4,966,562	+		EFB2_04716	0.41	-1.3
4,966,562	+		EFB2_04716	0.41	+0.0
4,966,562	+		EFB2_04716	0.41	+1.1
4,966,562	+		EFB2_04716	0.41	-0.9
4,966,562	+		EFB2_04716	0.41	-0.8
4,966,562	+		EFB2_04716	0.41	+0.8
4,966,562	+		EFB2_04716	0.41	+2.6
4,966,563	-		EFB2_04716	0.41	+0.3
4,966,563	-		EFB2_04716	0.41	-0.2
4,966,563	-		EFB2_04716	0.41	+0.8
4,966,563	-		EFB2_04716	0.41	-0.5
4,966,563	-		EFB2_04716	0.41	-0.9
4,966,563	-		EFB2_04716	0.41	+0.1
4,966,563	-		EFB2_04716	0.41	-1.0
4,966,579	+		EFB2_04716	0.46	-0.2
4,966,580	-		EFB2_04716	0.47	+0.7
4,966,587	+		EFB2_04716	0.49	+0.2
4,966,587	+		EFB2_04716	0.49	+0.8
4,966,588	-		EFB2_04716	0.49	+1.0
4,966,600	-		EFB2_04716	0.53	+1.1
4,966,639	+		EFB2_04716	0.65	+1.5
4,966,640	-		EFB2_04716	0.66	+0.2
4,966,667	+		EFB2_04716	0.74	+1.1
4,966,667	+		EFB2_04716	0.74	+1.3
4,966,667	+		EFB2_04716	0.74	-0.5
4,966,667	+		EFB2_04716	0.74	+1.5
4,966,667	+		EFB2_04716	0.74	+0.6
4,966,667	+		EFB2_04716	0.74	+0.0
4,966,667	+		EFB2_04716	0.74	-0.1
4,966,667	+		EFB2_04716	0.74	+0.5
4,966,667	+		EFB2_04716	0.74	+0.4
4,966,667	+		EFB2_04716	0.74	-0.8
4,966,667	+		EFB2_04716	0.74	-0.0
4,966,667	+		EFB2_04716	0.74	-0.4
4,966,668	-		EFB2_04716	0.75	-0.5
4,966,668	-		EFB2_04716	0.75	-0.8
4,966,668	-		EFB2_04716	0.75	-0.3
4,966,668	-		EFB2_04716	0.75	+0.3
4,966,668	-		EFB2_04716	0.75	-0.5
4,966,668	-		EFB2_04716	0.75	+1.2
4,966,668	-		EFB2_04716	0.75	+1.6
4,966,668	-		EFB2_04716	0.75	+0.0
4,966,668	-		EFB2_04716	0.75	+1.7
4,966,668	-		EFB2_04716	0.75	-0.9
4,966,668	-		EFB2_04716	0.75	-0.2
4,966,668	-		EFB2_04716	0.75	+1.6
4,966,668	-		EFB2_04716	0.75	+2.3
4,966,668	-		EFB2_04716	0.75	+0.8
4,966,668	-		EFB2_04716	0.75	-1.5
4,966,668	-		EFB2_04716	0.75	+0.2
4,966,669	+		EFB2_04716	0.75	-0.1
4,966,669	+		EFB2_04716	0.75	+1.1
4,966,669	+		EFB2_04716	0.75	+0.5
4,966,669	+		EFB2_04716	0.75	+0.3
4,966,669	+		EFB2_04716	0.75	+0.6
4,966,670	-		EFB2_04716	0.75	-0.0
4,966,670	-		EFB2_04716	0.75	+0.2
4,966,670	-		EFB2_04716	0.75	-0.7
4,966,670	-		EFB2_04716	0.75	+0.1
4,966,681	+		EFB2_04716	0.79	+1.9
4,966,736	+				-1.7
4,966,736	+				-0.9
4,966,736	+				-1.6
4,966,736	+				-0.4
4,966,736	+				+0.0
4,966,736	+				+0.7
4,966,745	+				+1.1
4,966,798	+				+1.1
4,966,799	-				+1.1
4,966,799	-				+0.8
4,966,799	-				+0.4
4,966,802	+				-0.7
4,966,803	-				-1.3
4,966,836	-				+0.0
4,966,848	+				+0.9
4,966,848	+				+1.1
4,966,880	-				-0.4
4,966,882	+				+0.2
4,966,882	+				-1.2
4,966,882	+				-0.4
4,966,899	-				+0.1
4,966,963	+		EFB2_04717	0.13	+0.5
4,966,964	-		EFB2_04717	0.13	+1.8
4,966,964	-		EFB2_04717	0.13	+1.3
4,967,030	+		EFB2_04717	0.17	+1.5
4,967,030	+		EFB2_04717	0.17	+1.2
4,967,038	+		EFB2_04717	0.18	+1.5
4,967,039	-		EFB2_04717	0.18	+0.5
4,967,039	-		EFB2_04717	0.18	-0.2
4,967,042	+		EFB2_04717	0.18	+0.5
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