Strain Fitness in Escherichia fergusonii Becca around EFB2_04393

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
4,613,934	-				-1.0
4,614,430	+				+1.3
4,614,431	-				+1.6
4,614,431	-				+1.4
4,614,449	+				+0.1
4,614,450	-				-0.1
4,614,468	+				+1.0
4,614,468	+				+1.8
4,614,468	+				+1.1
4,614,468	+				+1.2
4,614,468	+				-2.4
4,614,469	-				+0.9
4,614,469	-				-2.7
4,614,469	-				+0.4
4,614,469	-				-2.7
4,614,469	-				+0.2
4,614,469	-				-3.2
4,614,585	+				-1.6
4,614,585	+				-2.4
4,614,585	+				+1.6
4,614,585	+				-2.0
4,614,585	+				+3.8
4,614,585	+				-0.4
4,614,586	-				-2.5
4,614,586	-				+0.9
4,614,586	-				-0.6
4,614,586	-				+1.6
4,614,586	-				-0.2
4,614,586	-				+0.5
4,614,586	-				-2.1
4,614,586	-				-0.0
4,614,586	-				+0.3
4,614,588	+				+0.5
4,614,588	+				+0.6
4,614,588	+				+1.1
4,614,589	-				-1.2
4,614,589	-				-0.2
4,614,618	+				+0.6
4,614,619	-				-1.8
4,614,619	-				-1.5
4,614,627	+				+1.1
4,614,627	+				-1.6
4,614,628	-				-2.1
4,614,628	-				+1.1
4,614,628	-				-0.9
4,614,630	+				-0.7
4,614,630	+				+0.6
4,614,630	+				-0.1
4,614,630	+				+0.6
4,614,630	+				+0.1
4,614,630	+				+0.7
4,614,630	+				-0.2
4,614,630	+				-1.0
4,614,630	+				-3.4
4,614,630	+				+1.0
4,614,630	+				-1.3
4,614,630	+				+0.2
4,614,630	+				+0.5
4,614,630	+				+0.2
4,614,631	-				+2.1
4,614,631	-				+1.2
4,614,631	-				+0.3
4,614,631	-				-1.3
4,614,631	-				+1.9
4,614,631	-				-0.6
4,614,631	-				-0.1
4,614,631	-				-0.1
4,614,631	-				+0.5
4,614,631	-				-3.7
4,614,640	+				+1.2
4,614,640	+				-0.0
4,614,640	+				-1.0
4,614,640	+				+0.5
4,614,640	+				-1.2
4,614,640	+				+0.1
4,614,641	-				-2.2
4,614,670	+		EFB2_04394	0.12	+0.4
4,614,670	+		EFB2_04394	0.12	-1.7
4,614,670	+		EFB2_04394	0.12	+0.0
4,614,671	-		EFB2_04394	0.12	+1.3
4,614,675	+		EFB2_04394	0.12	+0.5
4,614,675	+		EFB2_04394	0.12	-0.5
4,614,675	+		EFB2_04394	0.12	+1.7
4,614,675	+		EFB2_04394	0.12	+0.5
4,614,675	+		EFB2_04394	0.12	-0.7
4,614,675	+		EFB2_04394	0.12	-0.1
4,614,675	+		EFB2_04394	0.12	+0.9
4,614,675	+		EFB2_04394	0.12	+1.2
4,614,675	+		EFB2_04394	0.12	-0.2
4,614,675	+		EFB2_04394	0.12	-0.8
4,614,675	+		EFB2_04394	0.12	+0.2
4,614,676	-		EFB2_04394	0.12	+0.3
4,614,676	-		EFB2_04394	0.12	+0.6
4,614,676	-		EFB2_04394	0.12	+0.3
4,614,676	-		EFB2_04394	0.12	-0.4
4,614,719	+		EFB2_04394	0.16	-2.5
4,614,801	+		EFB2_04394	0.22	-0.2
4,614,877	+		EFB2_04394	0.28	+0.8
4,614,877	+		EFB2_04394	0.28	-0.9
4,614,926	+		EFB2_04394	0.32	-0.2
4,614,926	+		EFB2_04394	0.32	-0.1
4,614,926	+		EFB2_04394	0.32	+1.0
4,614,926	+		EFB2_04394	0.32	+0.9
4,614,926	+		EFB2_04394	0.32	+1.2
4,614,926	+		EFB2_04394	0.32	+0.8
4,614,926	+		EFB2_04394	0.32	+0.1
4,614,926	+		EFB2_04394	0.32	-1.2
4,614,926	+		EFB2_04394	0.32	+0.7
4,614,926	+		EFB2_04394	0.32	-0.4
4,614,926	+		EFB2_04394	0.32	+0.7
4,614,926	+		EFB2_04394	0.32	-0.2
4,614,926	+		EFB2_04394	0.32	+0.2
4,614,926	+		EFB2_04394	0.32	-0.5
4,614,926	+		EFB2_04394	0.32	-1.1
4,614,926	+		EFB2_04394	0.32	+0.1
4,614,927	-		EFB2_04394	0.32	+0.1
4,614,927	-		EFB2_04394	0.32	+0.8
4,614,927	-		EFB2_04394	0.32	+0.5
4,614,927	-		EFB2_04394	0.32	-0.5
4,614,927	-		EFB2_04394	0.32	-1.3
4,614,927	-		EFB2_04394	0.32	-3.3
4,614,927	-		EFB2_04394	0.32	+0.0
4,614,927	-		EFB2_04394	0.32	-1.7
4,614,927	-		EFB2_04394	0.32	+0.5
4,614,927	-		EFB2_04394	0.32	+0.1
4,614,927	-		EFB2_04394	0.32	+0.4
4,614,927	-		EFB2_04394	0.32	+2.5
4,614,927	-		EFB2_04394	0.32	+1.5
4,614,927	-		EFB2_04394	0.32	-0.1
4,614,927	-		EFB2_04394	0.32	+0.0
4,614,927	-		EFB2_04394	0.32	+1.5
4,614,927	-		EFB2_04394	0.32	-0.2
4,614,927	-		EFB2_04394	0.32	+0.2
4,614,927	-		EFB2_04394	0.32	-2.6
4,614,927	-		EFB2_04394	0.32	+0.3
4,614,927	-		EFB2_04394	0.32	-2.2
4,614,927	-		EFB2_04394	0.32	+1.1
4,614,927	-		EFB2_04394	0.32	-1.3
4,614,927	-		EFB2_04394	0.32	-0.6
4,614,927	-		EFB2_04394	0.32	+1.5
4,614,927	-		EFB2_04394	0.32	+1.0
4,614,928	+		EFB2_04394	0.32	-2.6
4,614,928	+		EFB2_04394	0.32	-1.0
4,614,929	-		EFB2_04394	0.32	-0.3
4,614,934	+		EFB2_04394	0.33	+0.6
4,614,958	+		EFB2_04394	0.35	-1.2
4,614,958	+		EFB2_04394	0.35	+0.4
4,614,958	+		EFB2_04394	0.35	-0.2
4,614,958	+		EFB2_04394	0.35	+1.3
4,614,958	+		EFB2_04394	0.35	+1.2
4,614,959	-		EFB2_04394	0.35	-3.7
4,614,959	-		EFB2_04394	0.35	-0.5
4,614,959	-		EFB2_04394	0.35	-1.9
4,614,959	-		EFB2_04394	0.35	+0.0
4,614,963	+		EFB2_04394	0.35	+0.2
4,614,963	+		EFB2_04394	0.35	+1.4
4,614,963	+		EFB2_04394	0.35	-1.7
4,614,963	+		EFB2_04394	0.35	+0.6
4,614,963	+		EFB2_04394	0.35	-1.3
4,614,963	+		EFB2_04394	0.35	-1.0
4,614,964	-		EFB2_04394	0.35	+0.4
4,614,964	-		EFB2_04394	0.35	-0.1
4,614,964	-		EFB2_04394	0.35	+0.2
4,614,964	-		EFB2_04394	0.35	+0.5
4,614,964	-		EFB2_04394	0.35	-0.4
4,614,964	-		EFB2_04394	0.35	+1.4
4,614,973	+		EFB2_04394	0.36	+0.5
4,614,973	+		EFB2_04394	0.36	+0.2
4,614,973	+		EFB2_04394	0.36	+0.2
4,614,973	+		EFB2_04394	0.36	-0.1
4,614,974	-		EFB2_04394	0.36	-0.1
4,614,974	-		EFB2_04394	0.36	-0.2
4,614,974	-		EFB2_04394	0.36	+0.7
4,614,974	-		EFB2_04394	0.36	+0.3
4,614,974	-		EFB2_04394	0.36	-1.0
4,614,974	-		EFB2_04394	0.36	+1.0
4,614,974	-		EFB2_04394	0.36	+0.6
4,614,985	+		EFB2_04394	0.37	-0.1
4,614,985	+		EFB2_04394	0.37	+1.2
4,614,986	-		EFB2_04394	0.37	-2.0
4,615,006	+		EFB2_04394	0.38	+0.6
4,615,006	+		EFB2_04394	0.38	-1.1
4,615,039	+		EFB2_04394	0.41	-1.6
4,615,040	-		EFB2_04394	0.41	+0.2
4,615,072	+		EFB2_04394	0.44	+1.7
4,615,073	-		EFB2_04394	0.44	+1.6
4,615,073	-		EFB2_04394	0.44	-1.9
4,615,092	+		EFB2_04394	0.45	+0.3
4,615,141	+		EFB2_04394	0.49	+0.9
4,615,141	+		EFB2_04394	0.49	+2.4
4,615,141	+		EFB2_04394	0.49	+0.0
4,615,141	+		EFB2_04394	0.49	+0.5
4,615,141	+		EFB2_04394	0.49	+0.0
4,615,141	+		EFB2_04394	0.49	-3.0
4,615,141	+		EFB2_04394	0.49	+0.2
4,615,142	-		EFB2_04394	0.49	-3.7
4,615,142	-		EFB2_04394	0.49	-1.0
4,615,142	-		EFB2_04394	0.49	-0.2
4,615,142	-		EFB2_04394	0.49	+0.6
4,615,142	-		EFB2_04394	0.49	-1.8
4,615,142	-		EFB2_04394	0.49	+0.1
4,615,212	+		EFB2_04394	0.55	+0.2
4,615,212	+		EFB2_04394	0.55	-1.4
4,615,212	+		EFB2_04394	0.55	-1.0
4,615,212	+		EFB2_04394	0.55	+0.1
4,615,212	+		EFB2_04394	0.55	-0.8
4,615,212	+		EFB2_04394	0.55	+0.5
4,615,212	+		EFB2_04394	0.55	-3.9
4,615,212	+		EFB2_04394	0.55	-2.2
4,615,212	+		EFB2_04394	0.55	+0.1
4,615,213	-		EFB2_04394	0.55	+0.9
4,615,213	-		EFB2_04394	0.55	+1.6
4,615,213	-		EFB2_04394	0.55	+1.6
4,615,213	-		EFB2_04394	0.55	+0.8
4,615,217	+		EFB2_04394	0.55	-0.1
4,615,217	+		EFB2_04394	0.55	+0.9
4,615,217	+		EFB2_04394	0.55	+1.3
4,615,217	+		EFB2_04394	0.55	-0.2
4,615,217	+		EFB2_04394	0.55	-0.2
4,615,217	+		EFB2_04394	0.55	-0.2
4,615,218	-		EFB2_04394	0.55	-0.5
4,615,218	-		EFB2_04394	0.55	-0.6
4,615,218	-		EFB2_04394	0.55	-1.4
4,615,228	+		EFB2_04394	0.56	-0.2
4,615,228	+		EFB2_04394	0.56	-0.7
4,615,229	-		EFB2_04394	0.56	-0.3
4,615,233	+		EFB2_04394	0.56	+0.4
4,615,234	-		EFB2_04394	0.56	+0.5
4,615,242	+		EFB2_04394	0.57	+2.0
4,615,242	+		EFB2_04394	0.57	+0.6
4,615,242	+		EFB2_04394	0.57	+0.8
4,615,242	+		EFB2_04394	0.57	+0.0
4,615,243	-		EFB2_04394	0.57	+2.0
4,615,243	-		EFB2_04394	0.57	-0.3
4,615,243	-		EFB2_04394	0.57	-0.5
4,615,243	-		EFB2_04394	0.57	+0.9
4,615,243	-		EFB2_04394	0.57	+1.1
4,615,243	-		EFB2_04394	0.57	-1.8