Strain Fitness in Escherichia fergusonii Becca around EFB2_04243

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
4,457,957	+		EFB2_04243	0.20	-2.2
4,457,997	+		EFB2_04243	0.28	-1.2
4,457,997	+		EFB2_04243	0.28	+0.7
4,457,997	+		EFB2_04243	0.28	-1.4
4,457,997	+		EFB2_04243	0.28	+0.3
4,457,997	+		EFB2_04243	0.28	+0.3
4,457,997	+		EFB2_04243	0.28	-0.7
4,457,997	+		EFB2_04243	0.28	+1.5
4,457,997	+		EFB2_04243	0.28	+0.5
4,457,997	+		EFB2_04243	0.28	+1.0
4,457,997	+		EFB2_04243	0.28	-0.2
4,457,997	+		EFB2_04243	0.28	-0.4
4,457,997	+		EFB2_04243	0.28	+0.5
4,457,998	-		EFB2_04243	0.29	+0.8
4,457,998	-		EFB2_04243	0.29	+1.4
4,457,998	-		EFB2_04243	0.29	-1.2
4,457,998	-		EFB2_04243	0.29	-0.2
4,457,998	-		EFB2_04243	0.29	-0.3
4,457,998	-		EFB2_04243	0.29	-1.0
4,457,998	-		EFB2_04243	0.29	-2.3
4,457,998	-		EFB2_04243	0.29	+1.7
4,457,998	-		EFB2_04243	0.29	+0.5
4,457,998	-		EFB2_04243	0.29	-2.0
4,457,998	-		EFB2_04243	0.29	+1.3
4,457,998	-		EFB2_04243	0.29	-3.5
4,457,998	-		EFB2_04243	0.29	-1.0
4,457,998	-		EFB2_04243	0.29	-1.5
4,457,998	-		EFB2_04243	0.29	+0.0
4,458,017	+		EFB2_04243	0.32	+0.3
4,458,032	+		EFB2_04243	0.36	+0.3
4,458,032	+		EFB2_04243	0.36	-2.0
4,458,032	+		EFB2_04243	0.36	+1.0
4,458,032	+		EFB2_04243	0.36	+0.6
4,458,032	+		EFB2_04243	0.36	-3.0
4,458,032	+		EFB2_04243	0.36	+1.1
4,458,032	+		EFB2_04243	0.36	-3.2
4,458,032	+		EFB2_04243	0.36	+0.3
4,458,032	+		EFB2_04243	0.36	-0.9
4,458,032	+		EFB2_04243	0.36	+2.5
4,458,032	+		EFB2_04243	0.36	-1.7
4,458,032	+		EFB2_04243	0.36	+0.3
4,458,032	+		EFB2_04243	0.36	-1.7
4,458,032	+		EFB2_04243	0.36	+1.0
4,458,032	+		EFB2_04243	0.36	+0.4
4,458,032	+		EFB2_04243	0.36	+0.1
4,458,032	+		EFB2_04243	0.36	+0.9
4,458,032	+		EFB2_04243	0.36	-1.1
4,458,032	+		EFB2_04243	0.36	+1.5
4,458,033	-		EFB2_04243	0.36	-1.6
4,458,033	-		EFB2_04243	0.36	-1.0
4,458,033	-		EFB2_04243	0.36	+0.7
4,458,033	-		EFB2_04243	0.36	+0.9
4,458,033	-		EFB2_04243	0.36	+0.3
4,458,033	-		EFB2_04243	0.36	-0.2
4,458,033	-		EFB2_04243	0.36	+0.6
4,458,033	-		EFB2_04243	0.36	-0.2
4,458,033	-		EFB2_04243	0.36	-0.2
4,458,033	-		EFB2_04243	0.36	-1.5
4,458,033	-		EFB2_04243	0.36	+1.0
4,458,033	-		EFB2_04243	0.36	-2.4
4,458,033	-		EFB2_04243	0.36	-0.3
4,458,033	-		EFB2_04243	0.36	-0.5
4,458,033	-		EFB2_04243	0.36	-4.5
4,458,033	-		EFB2_04243	0.36	-2.4
4,458,033	-		EFB2_04243	0.36	-0.3
4,458,033	-		EFB2_04243	0.36	+0.1
4,458,033	-		EFB2_04243	0.36	-0.2
4,458,033	-		EFB2_04243	0.36	+1.3
4,458,033	-		EFB2_04243	0.36	+1.3
4,458,033	-		EFB2_04243	0.36	-0.9
4,458,033	-		EFB2_04243	0.36	+0.3
4,458,036	+		EFB2_04243	0.36	-4.5
4,458,036	+		EFB2_04243	0.36	+0.5
4,458,036	+		EFB2_04243	0.36	+1.0
4,458,036	+		EFB2_04243	0.36	-0.2
4,458,036	+		EFB2_04243	0.36	-2.1
4,458,036	+		EFB2_04243	0.36	+0.0
4,458,036	+		EFB2_04243	0.36	+1.1
4,458,036	+		EFB2_04243	0.36	-0.4
4,458,036	+		EFB2_04243	0.36	+0.0
4,458,036	+		EFB2_04243	0.36	-1.3
4,458,036	+		EFB2_04243	0.36	+0.4
4,458,036	+		EFB2_04243	0.36	-0.4
4,458,036	+		EFB2_04243	0.36	+0.8
4,458,036	+		EFB2_04243	0.36	-2.4
4,458,036	+		EFB2_04243	0.36	+0.3
4,458,036	+		EFB2_04243	0.36	+2.0
4,458,036	+		EFB2_04243	0.36	+0.8
4,458,036	+		EFB2_04243	0.36	-0.0
4,458,036	+		EFB2_04243	0.36	-3.0
4,458,036	+		EFB2_04243	0.36	+0.3
4,458,036	+		EFB2_04243	0.36	+0.3
4,458,036	+		EFB2_04243	0.36	+0.4
4,458,036	+		EFB2_04243	0.36	-2.1
4,458,036	+		EFB2_04243	0.36	+2.7
4,458,036	+		EFB2_04243	0.36	+0.4
4,458,036	+		EFB2_04243	0.36	+0.5
4,458,036	+		EFB2_04243	0.36	+1.1
4,458,036	+		EFB2_04243	0.36	+2.2
4,458,036	+		EFB2_04243	0.36	-0.2
4,458,036	+		EFB2_04243	0.36	-0.8
4,458,036	+		EFB2_04243	0.36	+0.3
4,458,036	+		EFB2_04243	0.36	-0.1
4,458,036	+		EFB2_04243	0.36	-2.5
4,458,036	+		EFB2_04243	0.36	-3.0
4,458,036	+		EFB2_04243	0.36	+0.2
4,458,036	+		EFB2_04243	0.36	+0.3
4,458,036	+		EFB2_04243	0.36	-0.1
4,458,036	+		EFB2_04243	0.36	-0.5
4,458,036	+		EFB2_04243	0.36	-2.7
4,458,036	+		EFB2_04243	0.36	+1.6
4,458,037	-		EFB2_04243	0.37	+1.6
4,458,037	-		EFB2_04243	0.37	+0.8
4,458,037	-		EFB2_04243	0.37	-1.4
4,458,037	-		EFB2_04243	0.37	-0.1
4,458,037	-		EFB2_04243	0.37	+2.3
4,458,037	-		EFB2_04243	0.37	+0.8
4,458,037	-		EFB2_04243	0.37	+1.9
4,458,037	-		EFB2_04243	0.37	+0.6
4,458,037	-		EFB2_04243	0.37	+1.8
4,458,037	-		EFB2_04243	0.37	+0.4
4,458,037	-		EFB2_04243	0.37	-0.0
4,458,037	-		EFB2_04243	0.37	-1.9
4,458,037	-		EFB2_04243	0.37	-2.4
4,458,037	-		EFB2_04243	0.37	-0.6
4,458,037	-		EFB2_04243	0.37	+0.9
4,458,037	-		EFB2_04243	0.37	-0.3
4,458,037	-		EFB2_04243	0.37	-2.2
4,458,037	-		EFB2_04243	0.37	+1.0
4,458,037	-		EFB2_04243	0.37	+0.6
4,458,037	-		EFB2_04243	0.37	+0.1
4,458,037	-		EFB2_04243	0.37	+0.3
4,458,037	-		EFB2_04243	0.37	-0.2
4,458,037	-		EFB2_04243	0.37	+0.0
4,458,037	-		EFB2_04243	0.37	+0.9
4,458,037	-		EFB2_04243	0.37	+0.6
4,458,037	-		EFB2_04243	0.37	+2.5
4,458,037	-		EFB2_04243	0.37	+0.4
4,458,037	-		EFB2_04243	0.37	-1.9
4,458,037	-		EFB2_04243	0.37	+1.2
4,458,037	-		EFB2_04243	0.37	+2.2
4,458,037	-		EFB2_04243	0.37	-0.3
4,458,037	-		EFB2_04243	0.37	+0.7
4,458,037	-		EFB2_04243	0.37	+1.0
4,458,041	+		EFB2_04243	0.38	+0.3
4,458,041	+		EFB2_04243	0.38	+0.4
4,458,041	+		EFB2_04243	0.38	+1.1
4,458,041	+		EFB2_04243	0.38	-3.3
4,458,041	+		EFB2_04243	0.38	+1.0
4,458,041	+		EFB2_04243	0.38	-0.3
4,458,041	+		EFB2_04243	0.38	-0.7
4,458,041	+		EFB2_04243	0.38	+1.0
4,458,041	+		EFB2_04243	0.38	+0.5
4,458,041	+		EFB2_04243	0.38	+0.1
4,458,041	+		EFB2_04243	0.38	-2.9
4,458,041	+		EFB2_04243	0.38	-2.2
4,458,041	+		EFB2_04243	0.38	+0.5
4,458,041	+		EFB2_04243	0.38	-0.2
4,458,041	+		EFB2_04243	0.38	+1.0
4,458,041	+		EFB2_04243	0.38	+0.4
4,458,041	+		EFB2_04243	0.38	-0.3
4,458,041	+		EFB2_04243	0.38	+0.8
4,458,041	+		EFB2_04243	0.38	-0.9
4,458,041	+		EFB2_04243	0.38	-0.6
4,458,041	+		EFB2_04243	0.38	+0.5
4,458,041	+		EFB2_04243	0.38	-0.8
4,458,041	+		EFB2_04243	0.38	-0.0
4,458,041	+		EFB2_04243	0.38	-1.3
4,458,041	+		EFB2_04243	0.38	-0.5
4,458,041	+		EFB2_04243	0.38	+2.0
4,458,041	+		EFB2_04243	0.38	-0.9
4,458,042	-		EFB2_04243	0.38	+0.7
4,458,042	-		EFB2_04243	0.38	-0.8
4,458,042	-		EFB2_04243	0.38	-2.3
4,458,042	-		EFB2_04243	0.38	+0.7
4,458,042	-		EFB2_04243	0.38	+0.6
4,458,042	-		EFB2_04243	0.38	+1.5
4,458,042	-		EFB2_04243	0.38	+0.3
4,458,042	-		EFB2_04243	0.38	-0.2
4,458,042	-		EFB2_04243	0.38	-1.7
4,458,042	-		EFB2_04243	0.38	-0.3
4,458,042	-		EFB2_04243	0.38	+0.5
4,458,042	-		EFB2_04243	0.38	-3.5
4,458,042	-		EFB2_04243	0.38	-2.1
4,458,042	-		EFB2_04243	0.38	+0.4
4,458,042	-		EFB2_04243	0.38	+1.0
4,458,042	-		EFB2_04243	0.38	+0.8
4,458,042	-		EFB2_04243	0.38	+1.0
4,458,042	-		EFB2_04243	0.38	-0.1
4,458,042	-		EFB2_04243	0.38	-1.6
4,458,042	-		EFB2_04243	0.38	+1.3
4,458,042	-		EFB2_04243	0.38	+0.6
4,458,042	-		EFB2_04243	0.38	-2.6
4,458,042	-		EFB2_04243	0.38	-0.1
4,458,101	+		EFB2_04243	0.50	-3.4
4,458,101	+		EFB2_04243	0.50	-0.6
4,458,102	-		EFB2_04243	0.50	-0.1
4,458,143	+		EFB2_04243	0.59	-0.3
4,458,143	+		EFB2_04243	0.59	+0.3
4,458,143	+		EFB2_04243	0.59	+0.8
4,458,143	+		EFB2_04243	0.59	+0.4
4,458,143	+		EFB2_04243	0.59	+1.4
4,458,143	+		EFB2_04243	0.59	+1.3
4,458,144	-		EFB2_04243	0.59	-0.3
4,458,144	-		EFB2_04243	0.59	-0.5
4,458,144	-		EFB2_04243	0.59	-2.2
4,458,144	-		EFB2_04243	0.59	+0.9
4,458,144	-		EFB2_04243	0.59	+0.6
4,458,144	-		EFB2_04243	0.59	+1.0
4,458,144	-		EFB2_04243	0.59	-0.1
4,458,144	-		EFB2_04243	0.59	+2.0
4,458,144	-		EFB2_04243	0.59	+0.4
4,458,204	+		EFB2_04243	0.72	+2.0
4,458,205	-		EFB2_04243	0.72	-0.3
4,458,212	+		EFB2_04243	0.73	+0.5
4,458,212	+		EFB2_04243	0.73	-0.3
4,458,212	+		EFB2_04243	0.73	-0.3
4,458,238	+		EFB2_04243	0.79	+0.8
4,458,253	+		EFB2_04243	0.82	+0.3
4,458,253	+		EFB2_04243	0.82	+0.1
4,458,253	+		EFB2_04243	0.82	+0.2
4,458,253	+		EFB2_04243	0.82	-1.1
4,458,253	+		EFB2_04243	0.82	-0.2
4,458,253	+		EFB2_04243	0.82	+0.8
4,458,253	+		EFB2_04243	0.82	-0.3
4,458,253	+		EFB2_04243	0.82	+0.5
4,458,253	+		EFB2_04243	0.82	-0.8
4,458,253	+		EFB2_04243	0.82	+0.1
4,458,253	+		EFB2_04243	0.82	-0.2
4,458,254	-		EFB2_04243	0.82	-1.2
4,458,254	-		EFB2_04243	0.82	+1.6
4,458,254	-		EFB2_04243	0.82	-2.1
4,458,254	-		EFB2_04243	0.82	+0.4
4,458,254	-		EFB2_04243	0.82	+0.1
4,458,254	-		EFB2_04243	0.82	-0.3
4,458,254	-		EFB2_04243	0.82	-0.4
4,458,254	-		EFB2_04243	0.82	-4.1
4,458,254	-		EFB2_04243	0.82	+0.3
4,458,254	-		EFB2_04243	0.82	+0.2
4,458,254	-		EFB2_04243	0.82	+0.7
4,458,254	-		EFB2_04243	0.82	-2.2
4,458,267	+		EFB2_04243	0.85	+1.5
4,458,267	+		EFB2_04243	0.85	-0.7
4,458,267	+		EFB2_04243	0.85	+1.2
4,458,267	+		EFB2_04243	0.85	-0.6
4,458,268	-		EFB2_04243	0.85	-2.2
4,458,268	-		EFB2_04243	0.85	+0.6
4,458,268	-		EFB2_04243	0.85	-0.6
4,458,268	-		EFB2_04243	0.85	-0.4
4,458,268	-		EFB2_04243	0.85	+0.6
4,458,290	+		EFB2_04243	0.90	-0.4
4,458,290	+		EFB2_04243	0.90	+0.1
4,458,291	-				+0.0
4,458,305	+				-1.1
4,458,306	-				+2.4
4,458,308	+				+0.5
4,458,308	+				-2.2
4,458,308	+				-0.3
4,458,308	+				-0.9
4,458,308	+				+0.8
4,458,308	+				-0.6
4,458,308	+				+0.9
4,458,308	+				-2.0
4,458,308	+				-1.6
4,458,308	+				-0.5
4,458,308	+				+2.0
4,458,308	+				+0.4
4,458,308	+				-1.0
4,458,309	-				-2.4
4,458,309	-				+1.5
4,458,309	-				+2.2
4,458,309	-				+0.5
4,458,309	-				+0.4
4,458,312	+				-0.6
4,458,312	+				-0.9
4,458,312	+				+0.5
4,458,312	+				-0.1
4,458,312	+				-2.6
4,458,312	+				+0.4
4,458,312	+				-0.5
4,458,312	+				-3.2
4,458,313	-				-0.5
4,458,313	-				-0.8
4,458,313	-				+0.4
4,458,313	-				+0.6
4,458,313	-				+0.6
4,458,313	-				-0.7
4,458,328	+				-0.2
4,458,328	+				+0.1
4,458,328	+				+1.0
4,458,328	+				-0.4
4,458,328	+				+0.3
4,458,328	+				+0.0
4,458,328	+				+0.5
4,458,328	+				-1.8
4,458,328	+				-0.4
4,458,328	+				+0.8
4,458,329	-				-0.2
4,458,329	-				+1.5
4,458,329	-				-0.8
4,458,329	-				-0.6
4,458,329	-				-3.0
4,458,329	-				+1.5
4,458,329	-				-1.3
4,458,329	-				+0.3
4,458,418	-				-0.9
4,458,418	-				+0.5
4,458,421	+				+0.4
4,458,421	+				-1.3
4,458,421	+				+1.2
4,458,421	+				+1.1
4,458,421	+				-0.8
4,458,421	+				-0.3
4,458,421	+				-0.1
4,458,421	+				+0.1
4,458,421	+				-0.1
4,458,421	+				+0.6
4,458,421	+				-0.9
4,458,421	+				-1.9
4,458,421	+				-1.2
4,458,421	+				-1.1
4,458,421	+				-1.3
4,458,421	+				+0.9
4,458,421	+				+1.1
4,458,421	+				-0.2
4,458,421	+				-0.5
4,458,421	+				+1.7
4,458,422	-				+0.8
4,458,422	-				+0.8
4,458,422	-				+1.0
4,458,422	-				+0.5
4,458,422	-				+0.4
4,458,422	-				-0.8
4,458,422	-				+0.1
4,458,422	-				-0.5
4,458,422	-				-1.8
4,458,422	-				-1.0
4,458,422	-				-2.4
4,458,422	-				-0.3
4,458,427	+				+1.1
4,458,427	+				-0.0
4,458,427	+				-1.9
4,458,427	+				-0.4
4,458,427	+				-2.3
4,458,427	+				+1.5
4,458,427	+				+0.6
4,458,427	+				+0.9
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