Strain Fitness in Escherichia fergusonii Becca around EFB2_03661

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
3,829,733	+		EFB2_03660	0.69	+0.7
3,829,733	+		EFB2_03660	0.69	-1.2
3,829,733	+		EFB2_03660	0.69	-0.8
3,829,733	+		EFB2_03660	0.69	-3.0
3,829,733	+		EFB2_03660	0.69	-0.8
3,829,733	+		EFB2_03660	0.69	+1.7
3,829,733	+		EFB2_03660	0.69	-0.4
3,829,733	+		EFB2_03660	0.69	+0.6
3,829,733	+		EFB2_03660	0.69	+1.7
3,829,733	+		EFB2_03660	0.69	+0.1
3,829,733	+		EFB2_03660	0.69	+0.2
3,829,733	+		EFB2_03660	0.69	-0.6
3,829,734	-		EFB2_03660	0.70	-0.5
3,829,734	-		EFB2_03660	0.70	+0.9
3,829,754	+		EFB2_03660	0.70	-3.8
3,829,754	+		EFB2_03660	0.70	-1.2
3,829,755	-		EFB2_03660	0.70	+1.7
3,829,755	-		EFB2_03660	0.70	+0.8
3,829,755	-		EFB2_03660	0.70	-1.7
3,829,883	+		EFB2_03660	0.74	-3.4
3,829,884	-		EFB2_03660	0.74	-1.6
3,830,000	+		EFB2_03660	0.78	-2.4
3,830,000	+		EFB2_03660	0.78	+0.3
3,830,001	-		EFB2_03660	0.78	+0.6
3,830,001	-		EFB2_03660	0.78	-0.8
3,830,001	-		EFB2_03660	0.78	-0.9
3,830,118	+		EFB2_03660	0.82	+1.4
3,830,119	-		EFB2_03660	0.82	-2.6
3,830,141	+		EFB2_03660	0.82	+1.3
3,830,141	+		EFB2_03660	0.82	-1.5
3,830,141	+		EFB2_03660	0.82	+0.1
3,830,141	+		EFB2_03660	0.82	-2.7
3,830,142	-		EFB2_03660	0.83	+1.1
3,830,142	-		EFB2_03660	0.83	+0.8
3,830,189	-		EFB2_03660	0.84	-1.1
3,830,202	-		EFB2_03660	0.84	-0.2
3,830,204	+		EFB2_03660	0.84	-0.3
3,830,204	+		EFB2_03660	0.84	-0.0
3,830,204	+		EFB2_03660	0.84	-0.8
3,830,204	+		EFB2_03660	0.84	+1.9
3,830,204	+		EFB2_03660	0.84	+1.2
3,830,204	+		EFB2_03660	0.84	-1.5
3,830,204	+		EFB2_03660	0.84	+0.7
3,830,204	+		EFB2_03660	0.84	-0.1
3,830,204	+		EFB2_03660	0.84	-2.1
3,830,204	+		EFB2_03660	0.84	+1.8
3,830,204	+		EFB2_03660	0.84	+0.5
3,830,204	+		EFB2_03660	0.84	-0.4
3,830,204	+		EFB2_03660	0.84	+1.4
3,830,205	-		EFB2_03660	0.85	-2.0
3,830,205	-		EFB2_03660	0.85	+0.4
3,830,205	-		EFB2_03660	0.85	+0.8
3,830,205	-		EFB2_03660	0.85	-0.4
3,830,205	-		EFB2_03660	0.85	+0.0
3,830,205	-		EFB2_03660	0.85	+0.1
3,830,205	-		EFB2_03660	0.85	-1.9
3,830,205	-		EFB2_03660	0.85	-1.7
3,830,205	-		EFB2_03660	0.85	-1.3
3,830,223	+		EFB2_03660	0.85	+1.0
3,830,264	+		EFB2_03660	0.86	+0.9
3,830,265	-		EFB2_03660	0.86	-3.1
3,830,289	+		EFB2_03660	0.87	+0.1
3,830,289	+		EFB2_03660	0.87	+0.6
3,830,289	+		EFB2_03660	0.87	+0.2
3,830,289	+		EFB2_03660	0.87	+0.2
3,830,290	-		EFB2_03660	0.87	+1.3
3,830,308	+		EFB2_03660	0.88	-0.4
3,830,309	-		EFB2_03660	0.88	+0.7
3,830,316	-		EFB2_03660	0.88	-0.5
3,830,316	-		EFB2_03660	0.88	+1.1
3,830,316	-		EFB2_03660	0.88	+0.4
3,830,358	+		EFB2_03660	0.89	+0.3
3,830,358	+		EFB2_03660	0.89	+0.9
3,830,358	+		EFB2_03660	0.89	+0.0
3,830,358	+		EFB2_03660	0.89	-0.2
3,830,359	-		EFB2_03660	0.89	-1.1
3,830,359	-		EFB2_03660	0.89	+0.6
3,830,359	-		EFB2_03660	0.89	-2.3
3,830,473	-				-0.1
3,830,586	+				+1.0
3,830,587	-				-0.5
3,830,613	+				+1.7
3,830,614	-				+0.1
3,830,614	-				-3.0
3,830,689	+				-1.0
3,830,689	+				-2.8
3,830,689	+				-0.7
3,830,690	-				-0.0
3,830,693	+				+1.6
3,830,693	+				+0.9
3,830,693	+				+1.6
3,830,693	+				-0.1
3,830,693	+				+1.2
3,830,693	+				+1.1
3,830,693	+				+0.2
3,830,693	+				+1.1
3,830,693	+				-0.9
3,830,694	-				-0.1
3,830,694	-				+0.0
3,830,694	-				-1.4
3,830,694	-				-2.4
3,830,694	-				+0.3
3,830,694	-				+1.6
3,830,694	-				-1.8
3,830,694	-				-0.5
3,830,694	-				+1.0
3,830,694	-				-1.4
3,830,694	-				-2.1
3,830,694	-				+1.2
3,830,694	-				+1.5
3,830,712	+				+0.1
3,830,712	+				+0.1
3,830,712	+				-3.0
3,830,712	+				-1.3
3,830,727	+				+2.6
3,830,727	+				-0.5
3,830,727	+				-0.8
3,830,727	+				+1.8
3,830,728	-				-1.0
3,830,728	-				+0.5
3,830,728	-				+1.0
3,830,728	-				-1.5
3,830,762	+				-0.2
3,830,762	+				-1.1
3,830,762	+				-1.2
3,830,762	+				-0.7
3,830,762	+				-2.4
3,830,763	-				+2.5
3,830,763	-				+1.2
3,830,770	+				-2.1
3,830,771	-				+1.5
3,830,777	+				+0.3
3,830,816	+				-0.8
3,830,817	-				+1.0
3,830,817	-				-0.0
3,830,817	-				+0.6
3,830,817	-				+0.0
3,830,817	-				-0.5
3,830,833	+				-0.7
3,830,833	+				+0.5
3,830,833	+				-0.2
3,830,833	+				-3.4
3,830,882	+		EFB2_03661	0.12	+1.2
3,830,882	+		EFB2_03661	0.12	-0.2
3,830,882	+		EFB2_03661	0.12	-1.2
3,830,882	+		EFB2_03661	0.12	+0.2
3,830,883	-		EFB2_03661	0.12	+0.1
3,830,909	+		EFB2_03661	0.14	+1.1
3,830,910	-		EFB2_03661	0.14	+1.0
3,830,914	+		EFB2_03661	0.14	-2.4
3,830,914	+		EFB2_03661	0.14	-1.6
3,830,914	+		EFB2_03661	0.14	+0.3
3,830,914	+		EFB2_03661	0.14	+0.6
3,830,915	-		EFB2_03661	0.14	-2.5
3,830,942	+		EFB2_03661	0.17	-1.6
3,830,942	+		EFB2_03661	0.17	+1.2
3,830,942	+		EFB2_03661	0.17	-0.3
3,830,942	+		EFB2_03661	0.17	+1.1
3,830,942	+		EFB2_03661	0.17	-2.2
3,830,942	+		EFB2_03661	0.17	+0.1
3,830,942	+		EFB2_03661	0.17	-1.8
3,830,942	+		EFB2_03661	0.17	-0.6
3,830,942	+		EFB2_03661	0.17	+1.2
3,830,942	+		EFB2_03661	0.17	-0.8
3,830,942	+		EFB2_03661	0.17	-1.3
3,830,943	-		EFB2_03661	0.17	-1.3
3,830,943	-		EFB2_03661	0.17	+2.2
3,830,943	-		EFB2_03661	0.17	+1.3
3,830,943	-		EFB2_03661	0.17	+0.0
3,830,943	-		EFB2_03661	0.17	+1.5
3,830,943	-		EFB2_03661	0.17	+0.6
3,830,943	-		EFB2_03661	0.17	+0.8
3,830,943	-		EFB2_03661	0.17	-1.5
3,830,943	-		EFB2_03661	0.17	+0.4
3,830,943	-		EFB2_03661	0.17	-0.5
3,830,943	-		EFB2_03661	0.17	+0.7
3,830,943	-		EFB2_03661	0.17	-1.0
3,830,952	+		EFB2_03661	0.17	-1.0
3,830,952	+		EFB2_03661	0.17	-0.7
3,830,953	-		EFB2_03661	0.17	-1.2
3,830,955	+		EFB2_03661	0.18	-2.1
3,830,955	+		EFB2_03661	0.18	-0.2
3,830,955	+		EFB2_03661	0.18	-0.5
3,830,955	+		EFB2_03661	0.18	+1.9
3,830,956	-		EFB2_03661	0.18	+0.1
3,830,984	+		EFB2_03661	0.20	+0.3
3,830,984	+		EFB2_03661	0.20	-1.0
3,830,985	-		EFB2_03661	0.20	-1.6
3,830,985	-		EFB2_03661	0.20	+3.2
3,830,985	-		EFB2_03661	0.20	+2.1
3,830,985	-		EFB2_03661	0.20	-0.4
3,831,010	-		EFB2_03661	0.22	-0.9
3,831,023	+		EFB2_03661	0.23	-2.0
3,831,023	+		EFB2_03661	0.23	-0.7
3,831,023	+		EFB2_03661	0.23	+1.1
3,831,023	+		EFB2_03661	0.23	-0.4
3,831,023	+		EFB2_03661	0.23	-0.2
3,831,023	+		EFB2_03661	0.23	+0.4
3,831,023	+		EFB2_03661	0.23	-0.6
3,831,024	-		EFB2_03661	0.23	+0.4
3,831,024	-		EFB2_03661	0.23	-0.9
3,831,024	-		EFB2_03661	0.23	+0.0
3,831,024	-		EFB2_03661	0.23	-0.3
3,831,024	-		EFB2_03661	0.23	-0.4
3,831,024	-		EFB2_03661	0.23	-4.9
3,831,024	-		EFB2_03661	0.23	-1.8
3,831,087	+		EFB2_03661	0.28	+1.2
3,831,088	-		EFB2_03661	0.28	+0.9
3,831,088	-		EFB2_03661	0.28	+1.0
3,831,164	-		EFB2_03661	0.34	+0.2
3,831,261	+		EFB2_03661	0.42	+0.5
3,831,261	+		EFB2_03661	0.42	-1.5
3,831,261	+		EFB2_03661	0.42	-2.1
3,831,261	+		EFB2_03661	0.42	+0.6
3,831,261	+		EFB2_03661	0.42	+1.1
3,831,261	+		EFB2_03661	0.42	+1.7
3,831,261	+		EFB2_03661	0.42	-1.0
3,831,262	-		EFB2_03661	0.42	-1.5
3,831,262	-		EFB2_03661	0.42	+2.4
3,831,262	-		EFB2_03661	0.42	-4.2
3,831,262	-		EFB2_03661	0.42	-0.8
3,831,262	-		EFB2_03661	0.42	+0.9
3,831,262	-		EFB2_03661	0.42	-0.4
3,831,262	-		EFB2_03661	0.42	-2.0
3,831,262	-		EFB2_03661	0.42	-1.5
3,831,265	+		EFB2_03661	0.42	-1.0
3,831,265	+		EFB2_03661	0.42	-1.4
3,831,266	-		EFB2_03661	0.42	-1.5
3,831,266	-		EFB2_03661	0.42	-0.1
3,831,266	-		EFB2_03661	0.42	+0.8
3,831,278	+		EFB2_03661	0.43	-0.1
3,831,279	-		EFB2_03661	0.43	-1.6
3,831,288	+		EFB2_03661	0.44	+0.7
3,831,289	-		EFB2_03661	0.44	-1.8
3,831,289	-		EFB2_03661	0.44	+1.9
3,831,289	-		EFB2_03661	0.44	-1.6
3,831,314	+		EFB2_03661	0.46	-0.3
3,831,317	+		EFB2_03661	0.46	-0.2
3,831,317	+		EFB2_03661	0.46	-0.0
3,831,339	+		EFB2_03661	0.48	-0.3
3,831,383	-		EFB2_03661	0.51	+1.6
3,831,424	+		EFB2_03661	0.55	+2.1
3,831,477	+		EFB2_03661	0.59	+1.5
3,831,477	+		EFB2_03661	0.59	+2.1
3,831,477	+		EFB2_03661	0.59	-0.1
3,831,477	+		EFB2_03661	0.59	-0.8
3,831,477	+		EFB2_03661	0.59	-0.6
3,831,477	+		EFB2_03661	0.59	+0.1
3,831,477	+		EFB2_03661	0.59	-1.1
3,831,477	+		EFB2_03661	0.59	+0.5
3,831,478	-		EFB2_03661	0.59	-0.6
3,831,478	-		EFB2_03661	0.59	+0.2
3,831,481	+		EFB2_03661	0.59	-1.8
3,831,481	+		EFB2_03661	0.59	-2.9
3,831,481	+		EFB2_03661	0.59	-2.9
3,831,481	+		EFB2_03661	0.59	+1.3
3,831,482	-		EFB2_03661	0.59	-3.3
3,831,482	-		EFB2_03661	0.59	+1.5
3,831,482	-		EFB2_03661	0.59	-0.5
3,831,482	-		EFB2_03661	0.59	-0.3
3,831,482	-		EFB2_03661	0.59	-2.4
3,831,482	-		EFB2_03661	0.59	-1.3
3,831,482	-		EFB2_03661	0.59	+1.1
3,831,482	-		EFB2_03661	0.59	+0.7
3,831,489	+		EFB2_03661	0.60	-1.3
3,831,489	+		EFB2_03661	0.60	+0.1
3,831,489	+		EFB2_03661	0.60	-1.0
3,831,489	+		EFB2_03661	0.60	-1.1
3,831,489	+		EFB2_03661	0.60	-0.1
3,831,489	+		EFB2_03661	0.60	-1.4
3,831,489	+		EFB2_03661	0.60	-0.5
3,831,489	+		EFB2_03661	0.60	-2.9
3,831,489	+		EFB2_03661	0.60	-0.7
3,831,489	+		EFB2_03661	0.60	+0.6
3,831,489	+		EFB2_03661	0.60	+1.1
3,831,489	+		EFB2_03661	0.60	+0.4
3,831,489	+		EFB2_03661	0.60	-2.7
3,831,489	+		EFB2_03661	0.60	+1.1
3,831,489	+		EFB2_03661	0.60	-1.9
3,831,490	-		EFB2_03661	0.60	-0.5
3,831,490	-		EFB2_03661	0.60	-0.0
3,831,490	-		EFB2_03661	0.60	-3.1
3,831,490	-		EFB2_03661	0.60	-0.7
3,831,490	-		EFB2_03661	0.60	-0.2
3,831,490	-		EFB2_03661	0.60	+1.3
3,831,490	-		EFB2_03661	0.60	+0.5
3,831,490	-		EFB2_03661	0.60	+1.4
3,831,490	-		EFB2_03661	0.60	+1.5
3,831,490	-		EFB2_03661	0.60	-0.5
3,831,490	-		EFB2_03661	0.60	-0.7
3,831,490	-		EFB2_03661	0.60	+0.4
3,831,500	+		EFB2_03661	0.61	-1.0
3,831,501	-		EFB2_03661	0.61	+4.7
3,831,533	+		EFB2_03661	0.63	+0.2
3,831,534	-		EFB2_03661	0.63	-1.4
3,831,534	-		EFB2_03661	0.63	+1.0
3,831,534	-		EFB2_03661	0.63	-1.2
3,831,534	-		EFB2_03661	0.63	+1.5
3,831,536	+		EFB2_03661	0.63	-0.4
3,831,536	+		EFB2_03661	0.63	+1.7
3,831,536	+		EFB2_03661	0.63	+0.8
3,831,536	+		EFB2_03661	0.63	+0.9
3,831,537	-		EFB2_03661	0.64	+0.3
3,831,537	-		EFB2_03661	0.64	+0.6
3,831,537	-		EFB2_03661	0.64	+1.0
3,831,537	-		EFB2_03661	0.64	+0.5
3,831,537	-		EFB2_03661	0.64	-1.8
3,831,544	+		EFB2_03661	0.64	+0.6
3,831,544	+		EFB2_03661	0.64	-0.0
3,831,544	+		EFB2_03661	0.64	+0.2
3,831,544	+		EFB2_03661	0.64	+2.3
3,831,544	+		EFB2_03661	0.64	-0.6
3,831,544	+		EFB2_03661	0.64	-3.1
3,831,544	+		EFB2_03661	0.64	-0.8
3,831,544	+		EFB2_03661	0.64	-0.1
3,831,544	+		EFB2_03661	0.64	+0.8
3,831,544	+		EFB2_03661	0.64	+1.8
3,831,545	-		EFB2_03661	0.64	+0.5
3,831,545	-		EFB2_03661	0.64	+2.9
3,831,545	-		EFB2_03661	0.64	-1.6
3,831,545	-		EFB2_03661	0.64	-2.7
3,831,545	-		EFB2_03661	0.64	-0.3
3,831,554	-		EFB2_03661	0.65	-0.7
3,831,572	+		EFB2_03661	0.66	+0.8
3,831,572	+		EFB2_03661	0.66	+0.6
3,831,573	-		EFB2_03661	0.66	-0.1
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3,832,989	-		EFB2_03662	0.80	-1.3
3,832,989	-		EFB2_03662	0.80	-1.1
3,832,989	-		EFB2_03662	0.80	+1.3
3,832,989	-		EFB2_03662	0.80	+0.3
3,832,989	-		EFB2_03662	0.80	-2.0
3,832,989	-		EFB2_03662	0.80	-2.7
3,832,992	+		EFB2_03662	0.80	-0.5
3,832,992	+		EFB2_03662	0.80	-1.8
3,832,992	+		EFB2_03662	0.80	-0.7
3,832,992	+		EFB2_03662	0.80	-2.5
3,832,993	-		EFB2_03662	0.80	+0.7
3,832,993	-		EFB2_03662	0.80	-0.3
3,832,993	-		EFB2_03662	0.80	+0.3