Strain Fitness in Escherichia fergusonii Becca around EFB2_03632

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
3,797,939	+		EFB2_03630	0.85	+1.7
3,797,940	-		EFB2_03630	0.85	+1.5
3,797,958	+		EFB2_03630	0.86	+0.8
3,797,958	+		EFB2_03630	0.86	-0.8
3,797,959	-		EFB2_03630	0.86	-0.7
3,797,959	-		EFB2_03630	0.86	+0.9
3,797,959	-		EFB2_03630	0.86	+1.9
3,797,959	-		EFB2_03630	0.86	-0.2
3,798,013	+				-0.3
3,798,013	+				+0.9
3,798,020	-				+0.9
3,798,081	+				-0.5
3,798,081	+				+1.6
3,798,081	+				+0.1
3,798,081	+				-0.7
3,798,081	+				+1.0
3,798,081	+				+0.6
3,798,081	+				-0.2
3,798,081	+				+1.1
3,798,081	+				-1.1
3,798,081	+				-0.6
3,798,081	+				+1.9
3,798,081	+				+2.5
3,798,081	+				-0.1
3,798,081	+				-3.7
3,798,081	+				+1.2
3,798,081	+				-0.5
3,798,081	+				-0.1
3,798,081	+				+1.3
3,798,081	+				+0.3
3,798,081	+				-0.5
3,798,081	+				-0.1
3,798,082	-				-2.1
3,798,082	-				-1.7
3,798,082	-				+0.4
3,798,082	-				-0.7
3,798,082	-				+1.3
3,798,082	-				+1.3
3,798,082	-				+1.1
3,798,082	-				-0.6
3,798,082	-				-0.6
3,798,082	-				-1.4
3,798,082	-				+1.4
3,798,082	-				+0.5
3,798,144	+				+0.1
3,798,188	+				+0.3
3,798,204	+				-2.6
3,798,204	+				+0.9
3,798,226	+				-0.4
3,798,226	+				-1.6
3,798,226	+				+0.2
3,798,226	+				+2.1
3,798,227	-				+1.1
3,798,227	-				+0.6
3,798,227	-				-2.4
3,798,325	+		EFB2_03631	0.10	-1.2
3,798,325	+		EFB2_03631	0.10	-2.8
3,798,325	+		EFB2_03631	0.10	-0.7
3,798,325	+		EFB2_03631	0.10	-1.4
3,798,325	+		EFB2_03631	0.10	+1.5
3,798,325	+		EFB2_03631	0.10	-0.4
3,798,325	+		EFB2_03631	0.10	+0.6
3,798,325	+		EFB2_03631	0.10	+0.2
3,798,325	+		EFB2_03631	0.10	-1.7
3,798,325	+		EFB2_03631	0.10	+0.3
3,798,326	-		EFB2_03631	0.11	-1.0
3,798,326	-		EFB2_03631	0.11	+0.9
3,798,326	-		EFB2_03631	0.11	+0.9
3,798,326	-		EFB2_03631	0.11	-1.8
3,798,326	-		EFB2_03631	0.11	+0.1
3,798,326	-		EFB2_03631	0.11	-0.7
3,798,326	-		EFB2_03631	0.11	-0.8
3,798,326	-		EFB2_03631	0.11	+1.0
3,798,326	-		EFB2_03631	0.11	-2.8
3,798,326	-		EFB2_03631	0.11	+0.3
3,798,326	-		EFB2_03631	0.11	+0.3
3,798,499	-		EFB2_03631	0.46	-0.4
3,798,499	-		EFB2_03631	0.46	+1.0
3,798,504	+		EFB2_03631	0.47	-2.6
3,798,504	+		EFB2_03631	0.47	-0.8
3,798,504	+		EFB2_03631	0.47	+2.2
3,798,504	+		EFB2_03631	0.47	+0.4
3,798,504	+		EFB2_03631	0.47	+0.9
3,798,505	-		EFB2_03631	0.47	+0.3
3,798,505	-		EFB2_03631	0.47	-0.2
3,798,513	+		EFB2_03631	0.49	-0.3
3,798,513	+		EFB2_03631	0.49	-2.7
3,798,523	+		EFB2_03631	0.51	-1.8
3,798,524	-		EFB2_03631	0.51	-0.0
3,798,577	-		EFB2_03631	0.62	+0.6
3,798,577	-		EFB2_03631	0.62	+1.5
3,798,667	-		EFB2_03631	0.80	+0.2
3,798,717	+				+1.6
3,798,717	+				-0.2
3,798,717	+				-0.0
3,798,717	+				-1.2
3,798,717	+				+1.3
3,798,717	+				+0.1
3,798,717	+				-2.4
3,798,718	-				+0.7
3,798,799	+				-1.1
3,798,799	+				-3.4
3,798,799	+				-2.7
3,798,799	+				+0.3
3,798,799	+				-0.3
3,798,799	+				-1.4
3,798,799	+				-2.5
3,798,799	+				-1.6
3,798,799	+				+3.2
3,798,800	-				-1.2
3,798,800	-				-0.2
3,798,800	-				-3.1
3,798,800	-				-0.9
3,798,800	-				-1.8
3,798,800	-				+0.2
3,798,802	+				-0.3
3,798,802	+				+1.1
3,798,802	+				-0.1
3,798,802	+				-0.6
3,798,802	+				+1.4
3,798,802	+				-1.4
3,798,802	+				-1.2
3,798,802	+				-0.4
3,798,802	+				-0.6
3,798,802	+				-0.2
3,798,802	+				+0.1
3,798,803	-				-0.2
3,798,803	-				-2.5
3,798,803	-				+0.0
3,798,803	-				+1.4
3,798,803	-				-1.4
3,798,803	-				+0.1
3,798,814	+				-1.3
3,798,815	-				-0.8
3,798,815	-				+0.6
3,798,815	-				-3.1
3,798,815	-				-0.9
3,798,815	-				+1.5
3,798,818	+				-0.8
3,798,818	+				+0.3
3,798,818	+				+0.0
3,798,818	+				-2.2
3,798,818	+				-0.4
3,798,818	+				-0.9
3,798,819	-				+0.6
3,798,819	-				+0.5
3,798,819	-				+1.1
3,798,843	+				-1.5
3,798,843	+				-1.9
3,798,843	+				-2.1
3,798,843	+				-1.7
3,798,844	-				-1.7
3,798,844	-				-3.2
3,798,844	-				-2.6
3,798,850	+				-0.8
3,798,850	+				-0.5
3,798,850	+				-2.0
3,798,851	-				+2.4
3,798,851	-				+0.6
3,798,851	-				-1.6
3,798,851	-				-1.8
3,798,851	-				-2.2
3,798,860	+				-0.8
3,798,860	+				-1.1
3,798,860	+				+0.3
3,798,860	+				+0.3
3,798,861	-				+0.5
3,798,861	-				+0.5
3,798,861	-				-0.9
3,798,861	-				+0.5
3,798,861	-				+0.5
3,798,861	-				-1.1
3,798,882	+				+0.9
3,798,882	+				+1.0
3,798,882	+				-0.5
3,798,882	+				+0.0
3,798,882	+				-2.3
3,798,883	-				-0.0
3,798,883	-				+1.0
3,798,883	-				-0.3
3,798,895	+				+0.3
3,798,895	+				-1.1
3,798,895	+				-0.1
3,798,895	+				+0.3
3,798,896	-				-1.8
3,798,896	-				-1.7
3,798,896	-				-1.5
3,798,946	+				-2.6
3,798,946	+				-1.3
3,798,973	+				+2.3
3,798,973	+				+2.2
3,798,973	+				+0.4
3,798,973	+				+1.0
3,798,973	+				-0.7
3,798,973	+				-1.1
3,798,973	+				-2.2
3,798,973	+				-2.1
3,798,973	+				+0.4
3,798,973	+				+0.8
3,798,974	-				+0.6
3,798,974	-				+2.3
3,798,974	-				+1.6
3,798,974	-				+1.6
3,798,974	-				-4.9
3,798,974	-				-2.4
3,798,974	-				+0.9
3,798,974	-				+1.1
3,798,974	-				+0.7
3,798,980	+				-1.3
3,798,980	+				+0.5
3,798,980	+				+0.6
3,798,980	+				-1.2
3,798,981	-				-1.5
3,798,981	-				-0.5
3,798,981	-				-1.5
3,798,981	-				-0.2
3,798,981	-				-0.9
3,798,992	+				-2.5
3,798,992	+				-1.2
3,798,992	+				-0.1
3,798,992	+				+1.9
3,798,992	+				-0.0
3,798,992	+				-0.2
3,798,993	-				+0.2
3,798,993	-				+1.9
3,798,993	-				-1.4
3,799,038	+		EFB2_03632	0.12	+1.8
3,799,038	+		EFB2_03632	0.12	+0.2
3,799,038	+		EFB2_03632	0.12	-2.4
3,799,038	+		EFB2_03632	0.12	-3.4
3,799,038	+		EFB2_03632	0.12	+2.1
3,799,038	+		EFB2_03632	0.12	+0.1
3,799,038	+		EFB2_03632	0.12	-1.3
3,799,038	+		EFB2_03632	0.12	-1.2
3,799,038	+		EFB2_03632	0.12	-0.5
3,799,038	+		EFB2_03632	0.12	+0.5
3,799,039	-		EFB2_03632	0.12	-0.9
3,799,039	-		EFB2_03632	0.12	-2.7
3,799,039	-		EFB2_03632	0.12	+2.1
3,799,039	-		EFB2_03632	0.12	-0.0
3,799,039	-		EFB2_03632	0.12	-1.0
3,799,039	-		EFB2_03632	0.12	-3.7
3,799,039	-		EFB2_03632	0.12	-2.0
3,799,039	-		EFB2_03632	0.12	+1.3
3,799,039	-		EFB2_03632	0.12	+0.8
3,799,039	-		EFB2_03632	0.12	+1.5
3,799,039	-		EFB2_03632	0.12	-0.7
3,799,039	-		EFB2_03632	0.12	-1.1
3,799,043	+		EFB2_03632	0.12	+0.4
3,799,044	-		EFB2_03632	0.12	+0.9
3,799,044	-		EFB2_03632	0.12	-0.0
3,799,076	-		EFB2_03632	0.16	-1.8
3,799,079	+		EFB2_03632	0.16	-0.1
3,799,080	-		EFB2_03632	0.16	+0.5
3,799,080	-		EFB2_03632	0.16	+0.7
3,799,199	-		EFB2_03632	0.29	-0.2
3,799,210	+		EFB2_03632	0.30	-0.3
3,799,210	+		EFB2_03632	0.30	-0.9
3,799,211	-		EFB2_03632	0.30	-0.3
3,799,211	-		EFB2_03632	0.30	-1.4
3,799,211	-		EFB2_03632	0.30	-1.2
3,799,211	-		EFB2_03632	0.30	+0.5
3,799,216	+		EFB2_03632	0.31	-0.5
3,799,216	+		EFB2_03632	0.31	+0.9
3,799,319	+		EFB2_03632	0.42	-1.9
3,799,319	+		EFB2_03632	0.42	+2.9
3,799,320	-		EFB2_03632	0.42	-0.1
3,799,320	-		EFB2_03632	0.42	-2.2
3,799,320	-		EFB2_03632	0.42	-2.4
3,799,320	-		EFB2_03632	0.42	-0.1
3,799,320	-		EFB2_03632	0.42	+0.9
3,799,346	+		EFB2_03632	0.45	-1.5
3,799,346	+		EFB2_03632	0.45	-2.2
3,799,347	-		EFB2_03632	0.45	-2.4
3,799,377	+		EFB2_03632	0.49	-3.4
3,799,377	+		EFB2_03632	0.49	+1.1
3,799,377	+		EFB2_03632	0.49	-0.9
3,799,377	+		EFB2_03632	0.49	-1.7
3,799,378	-		EFB2_03632	0.49	-0.8
3,799,378	-		EFB2_03632	0.49	+2.1
3,799,383	+		EFB2_03632	0.49	-1.4
3,799,383	+		EFB2_03632	0.49	+0.4
3,799,384	-		EFB2_03632	0.49	+0.8
3,799,384	-		EFB2_03632	0.49	+0.1
3,799,384	-		EFB2_03632	0.49	+2.0
3,799,384	-		EFB2_03632	0.49	+1.5
3,799,384	-		EFB2_03632	0.49	-0.6
3,799,395	-		EFB2_03632	0.51	+1.5
3,799,408	+		EFB2_03632	0.52	+0.5
3,799,409	-		EFB2_03632	0.52	-1.4
3,799,409	-		EFB2_03632	0.52	+0.3
3,799,430	+		EFB2_03632	0.54	+0.8
3,799,431	-		EFB2_03632	0.55	+0.8
3,799,431	-		EFB2_03632	0.55	-1.0
3,799,431	-		EFB2_03632	0.55	+0.3
3,799,436	+		EFB2_03632	0.55	-1.0
3,799,436	+		EFB2_03632	0.55	+0.1
3,799,436	+		EFB2_03632	0.55	+1.3
3,799,437	-		EFB2_03632	0.55	-0.2
3,799,437	-		EFB2_03632	0.55	+0.7
3,799,437	-		EFB2_03632	0.55	-2.8
3,799,481	+		EFB2_03632	0.60	-3.1
3,799,481	+		EFB2_03632	0.60	+1.5
3,799,482	-		EFB2_03632	0.60	-0.8
3,799,482	-		EFB2_03632	0.60	+2.1
3,799,522	+		EFB2_03632	0.65	-0.8
3,799,522	+		EFB2_03632	0.65	+2.1
3,799,522	+		EFB2_03632	0.65	-1.7
3,799,522	+		EFB2_03632	0.65	+0.9
3,799,522	+		EFB2_03632	0.65	+1.3
3,799,522	+		EFB2_03632	0.65	-0.8
3,799,522	+		EFB2_03632	0.65	+0.6
3,799,522	+		EFB2_03632	0.65	-2.3
3,799,522	+		EFB2_03632	0.65	+2.2
3,799,522	+		EFB2_03632	0.65	-1.1
3,799,522	+		EFB2_03632	0.65	+1.1
3,799,523	-		EFB2_03632	0.65	+0.6
3,799,523	-		EFB2_03632	0.65	-1.0
3,799,523	-		EFB2_03632	0.65	-0.3
3,799,523	-		EFB2_03632	0.65	-0.9
3,799,523	-		EFB2_03632	0.65	+1.0
3,799,523	-		EFB2_03632	0.65	-3.6
3,799,523	-		EFB2_03632	0.65	+0.2
3,799,523	-		EFB2_03632	0.65	-4.3
3,799,544	+		EFB2_03632	0.67	+2.1
3,799,544	+		EFB2_03632	0.67	+0.3
3,799,544	+		EFB2_03632	0.67	-0.4
3,799,544	+		EFB2_03632	0.67	-0.1
3,799,552	+		EFB2_03632	0.68	-0.1
3,799,552	+		EFB2_03632	0.68	-0.9
3,799,552	+		EFB2_03632	0.68	+0.5
3,799,553	-		EFB2_03632	0.68	-1.5
3,799,553	-		EFB2_03632	0.68	+0.5
3,799,553	-		EFB2_03632	0.68	-2.7
3,799,553	-		EFB2_03632	0.68	-2.7
3,799,553	-		EFB2_03632	0.68	+0.6
3,799,595	+		EFB2_03632	0.73	+1.1
3,799,595	+		EFB2_03632	0.73	+0.8
3,799,595	+		EFB2_03632	0.73	-0.3
3,799,595	+		EFB2_03632	0.73	+0.9
3,799,595	+		EFB2_03632	0.73	-0.5
3,799,595	+		EFB2_03632	0.73	-2.1
3,799,595	+		EFB2_03632	0.73	-2.7
3,799,595	+		EFB2_03632	0.73	+0.3
3,799,596	-		EFB2_03632	0.73	+0.8
3,799,596	-		EFB2_03632	0.73	+0.2
3,799,596	-		EFB2_03632	0.73	-0.3
3,799,596	-		EFB2_03632	0.73	-0.4
3,799,596	-		EFB2_03632	0.73	-1.0
3,799,596	-		EFB2_03632	0.73	-0.4
3,799,596	-		EFB2_03632	0.73	+0.5
3,799,596	-		EFB2_03632	0.73	-3.2
3,799,620	+		EFB2_03632	0.75	-4.2
3,799,620	+		EFB2_03632	0.75	-1.6
3,799,620	+		EFB2_03632	0.75	+0.9
3,799,620	+		EFB2_03632	0.75	+0.4
3,799,621	-		EFB2_03632	0.75	-2.3
3,799,707	+		EFB2_03632	0.85	-0.1
3,799,707	+		EFB2_03632	0.85	-1.3
3,799,707	+		EFB2_03632	0.85	+0.5
3,799,707	+		EFB2_03632	0.85	+1.5
3,799,707	+		EFB2_03632	0.85	-1.5
3,799,707	+		EFB2_03632	0.85	+0.5
3,799,707	+		EFB2_03632	0.85	+0.6
3,799,707	+		EFB2_03632	0.85	-2.2
3,799,707	+		EFB2_03632	0.85	-0.9
3,799,707	+		EFB2_03632	0.85	-0.4
3,799,707	+		EFB2_03632	0.85	+0.1
3,799,708	-		EFB2_03632	0.85	-1.1
3,799,708	-		EFB2_03632	0.85	-1.2
3,799,708	-		EFB2_03632	0.85	+2.2
3,799,708	-		EFB2_03632	0.85	+0.6
3,799,708	-		EFB2_03632	0.85	-1.1
3,799,708	-		EFB2_03632	0.85	-1.5
3,799,708	-		EFB2_03632	0.85	+1.1
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