Strain Fitness in Escherichia fergusonii Becca around EFB2_03623

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
3,788,321	+				-1.5
3,788,321	+				+0.6
3,788,322	-				+1.2
3,788,400	+				-0.0
3,788,400	+				+2.7
3,788,400	+				-2.3
3,788,400	+				-1.0
3,788,400	+				+0.7
3,788,400	+				+1.5
3,788,400	+				+0.7
3,788,400	+				-0.5
3,788,400	+				-1.6
3,788,401	-				-1.2
3,788,401	-				-0.3
3,788,401	-				+0.4
3,788,401	-				+4.4
3,788,401	-				+1.9
3,788,401	-				-0.1
3,788,401	-				+1.7
3,788,401	-				+2.7
3,788,401	-				+0.2
3,788,401	-				+1.7
3,788,401	-				-3.2
3,788,401	-				+1.3
3,788,401	-				+2.0
3,788,402	+				-2.9
3,788,402	+				+2.0
3,788,402	+				-0.9
3,788,402	+				+3.4
3,788,403	-				-0.7
3,788,403	-				-0.7
3,788,403	-				+0.6
3,788,403	-				+0.4
3,788,403	-				-2.2
3,788,403	-				+0.5
3,788,403	-				+1.8
3,788,403	-				-0.5
3,788,423	-				+1.7
3,788,450	+				+0.8
3,788,450	+				-2.6
3,788,450	+				+1.1
3,788,451	-				+0.1
3,788,451	-				-0.9
3,788,463	+				-0.2
3,788,464	-				-0.5
3,788,464	-				+0.6
3,788,464	-				-3.4
3,788,464	-				-1.2
3,788,465	+				+0.4
3,788,465	+				+1.3
3,788,465	+				-1.7
3,788,465	+				-0.3
3,788,465	+				+0.8
3,788,466	-				-1.4
3,788,466	-				+1.1
3,788,466	-				-1.1
3,788,466	-				-0.5
3,788,480	+				-1.8
3,788,480	+				+2.8
3,788,481	-				+0.4
3,788,481	-				+0.4
3,788,481	-				-0.8
3,788,481	-				+0.0
3,788,625	+				+0.6
3,788,625	+				+0.4
3,788,625	+				+0.2
3,788,625	+				-0.8
3,788,625	+				-1.3
3,788,625	+				-2.6
3,788,625	+				+0.1
3,788,625	+				-0.8
3,788,626	-				+0.3
3,788,626	-				-3.1
3,788,626	-				-3.5
3,788,626	-				-0.0
3,788,626	-				+0.2
3,788,626	-				-0.6
3,788,626	-				+2.1
3,788,626	-				-1.1
3,788,626	-				-0.5
3,788,730	+		EFB2_03622	0.23	-0.2
3,788,730	+		EFB2_03622	0.23	-1.4
3,788,731	-		EFB2_03622	0.23	+1.0
3,788,731	-		EFB2_03622	0.23	+0.1
3,788,731	-		EFB2_03622	0.23	-0.1
3,788,733	+		EFB2_03622	0.23	+0.1
3,788,733	+		EFB2_03622	0.23	-0.7
3,788,733	+		EFB2_03622	0.23	-0.9
3,788,733	+		EFB2_03622	0.23	-1.5
3,788,733	+		EFB2_03622	0.23	+1.7
3,788,733	+		EFB2_03622	0.23	+0.3
3,788,733	+		EFB2_03622	0.23	-1.2
3,788,733	+		EFB2_03622	0.23	-0.3
3,788,734	-		EFB2_03622	0.24	+0.6
3,788,734	-		EFB2_03622	0.24	-0.2
3,788,734	-		EFB2_03622	0.24	-0.2
3,788,734	-		EFB2_03622	0.24	-0.0
3,788,734	-		EFB2_03622	0.24	-2.3
3,788,734	-		EFB2_03622	0.24	+0.7
3,788,734	-		EFB2_03622	0.24	+2.1
3,788,734	-		EFB2_03622	0.24	-0.7
3,788,734	-		EFB2_03622	0.24	-0.1
3,788,738	+		EFB2_03622	0.25	+0.0
3,788,738	+		EFB2_03622	0.25	-2.4
3,788,738	+		EFB2_03622	0.25	+0.6
3,788,738	+		EFB2_03622	0.25	+1.4
3,788,738	+		EFB2_03622	0.25	+0.6
3,788,738	+		EFB2_03622	0.25	-2.9
3,788,738	+		EFB2_03622	0.25	-1.2
3,788,738	+		EFB2_03622	0.25	+0.3
3,788,738	+		EFB2_03622	0.25	+0.4
3,788,738	+		EFB2_03622	0.25	-0.6
3,788,738	+		EFB2_03622	0.25	+1.0
3,788,738	+		EFB2_03622	0.25	+0.9
3,788,738	+		EFB2_03622	0.25	-0.2
3,788,738	+		EFB2_03622	0.25	+0.0
3,788,738	+		EFB2_03622	0.25	-2.8
3,788,738	+		EFB2_03622	0.25	-1.2
3,788,738	+		EFB2_03622	0.25	-0.7
3,788,738	+		EFB2_03622	0.25	+1.3
3,788,738	+		EFB2_03622	0.25	-0.2
3,788,738	+		EFB2_03622	0.25	-1.6
3,788,739	-		EFB2_03622	0.25	+0.9
3,788,739	-		EFB2_03622	0.25	-1.0
3,788,739	-		EFB2_03622	0.25	-1.8
3,788,739	-		EFB2_03622	0.25	-0.9
3,788,739	-		EFB2_03622	0.25	+0.8
3,788,739	-		EFB2_03622	0.25	-1.7
3,788,739	-		EFB2_03622	0.25	+0.3
3,788,739	-		EFB2_03622	0.25	+1.2
3,788,739	-		EFB2_03622	0.25	-2.2
3,788,739	-		EFB2_03622	0.25	-0.4
3,788,739	-		EFB2_03622	0.25	-0.4
3,788,739	-		EFB2_03622	0.25	+1.9
3,788,739	-		EFB2_03622	0.25	-0.1
3,788,739	-		EFB2_03622	0.25	-1.5
3,788,739	-		EFB2_03622	0.25	+2.3
3,788,739	-		EFB2_03622	0.25	-1.9
3,788,739	-		EFB2_03622	0.25	+1.1
3,788,739	-		EFB2_03622	0.25	-0.2
3,788,739	-		EFB2_03622	0.25	+1.5
3,788,739	-		EFB2_03622	0.25	-1.0
3,788,739	-		EFB2_03622	0.25	+1.4
3,788,739	-		EFB2_03622	0.25	-0.6
3,788,739	-		EFB2_03622	0.25	-0.7
3,788,739	-		EFB2_03622	0.25	-0.5
3,788,739	-		EFB2_03622	0.25	-2.1
3,788,739	-		EFB2_03622	0.25	+1.2
3,788,739	-		EFB2_03622	0.25	+1.7
3,788,739	-		EFB2_03622	0.25	-1.2
3,788,739	-		EFB2_03622	0.25	+0.1
3,788,739	-		EFB2_03622	0.25	-0.2
3,788,739	-		EFB2_03622	0.25	+0.8
3,788,739	-		EFB2_03622	0.25	+0.3
3,788,742	+		EFB2_03622	0.26	-3.0
3,788,742	+		EFB2_03622	0.26	-0.3
3,788,742	+		EFB2_03622	0.26	+0.2
3,788,742	+		EFB2_03622	0.26	+0.4
3,788,742	+		EFB2_03622	0.26	+0.1
3,788,742	+		EFB2_03622	0.26	+1.3
3,788,742	+		EFB2_03622	0.26	+1.5
3,788,742	+		EFB2_03622	0.26	-1.1
3,788,742	+		EFB2_03622	0.26	-2.2
3,788,742	+		EFB2_03622	0.26	+0.9
3,788,742	+		EFB2_03622	0.26	-2.1
3,788,742	+		EFB2_03622	0.26	-0.3
3,788,742	+		EFB2_03622	0.26	-2.9
3,788,742	+		EFB2_03622	0.26	+0.8
3,788,742	+		EFB2_03622	0.26	-0.5
3,788,742	+		EFB2_03622	0.26	-3.8
3,788,742	+		EFB2_03622	0.26	+1.0
3,788,742	+		EFB2_03622	0.26	-1.2
3,788,742	+		EFB2_03622	0.26	+0.7
3,788,742	+		EFB2_03622	0.26	+1.8
3,788,742	+		EFB2_03622	0.26	+0.9
3,788,742	+		EFB2_03622	0.26	+2.3
3,788,742	+		EFB2_03622	0.26	-1.4
3,788,743	-		EFB2_03622	0.27	-0.4
3,788,743	-		EFB2_03622	0.27	+0.5
3,788,743	-		EFB2_03622	0.27	-1.4
3,788,743	-		EFB2_03622	0.27	-0.0
3,788,743	-		EFB2_03622	0.27	+0.8
3,788,743	-		EFB2_03622	0.27	+0.2
3,788,743	-		EFB2_03622	0.27	+0.3
3,788,743	-		EFB2_03622	0.27	+1.0
3,788,743	-		EFB2_03622	0.27	+1.7
3,788,743	-		EFB2_03622	0.27	-1.6
3,788,743	-		EFB2_03622	0.27	-2.9
3,788,743	-		EFB2_03622	0.27	-1.2
3,788,743	-		EFB2_03622	0.27	+0.3
3,788,743	-		EFB2_03622	0.27	-0.2
3,788,743	-		EFB2_03622	0.27	+0.4
3,788,743	-		EFB2_03622	0.27	+0.9
3,788,766	+		EFB2_03622	0.34	+2.2
3,788,766	+		EFB2_03622	0.34	-0.5
3,788,766	+		EFB2_03622	0.34	-0.2
3,788,766	+		EFB2_03622	0.34	-0.0
3,788,766	+		EFB2_03622	0.34	-1.6
3,788,766	+		EFB2_03622	0.34	+0.7
3,788,766	+		EFB2_03622	0.34	+1.6
3,788,767	-		EFB2_03622	0.34	+1.4
3,788,767	-		EFB2_03622	0.34	+1.5
3,788,767	-		EFB2_03622	0.34	-1.2
3,788,767	-		EFB2_03622	0.34	+0.5
3,788,767	-		EFB2_03622	0.34	+0.3
3,788,767	-		EFB2_03622	0.34	-0.4
3,788,767	-		EFB2_03622	0.34	+0.5
3,788,767	-		EFB2_03622	0.34	-1.7
3,788,767	-		EFB2_03622	0.34	-1.4
3,788,767	-		EFB2_03622	0.34	+1.6
3,788,769	+		EFB2_03622	0.35	+0.2
3,788,769	+		EFB2_03622	0.35	+0.1
3,788,769	+		EFB2_03622	0.35	+0.8
3,788,769	+		EFB2_03622	0.35	-2.0
3,788,770	-		EFB2_03622	0.35	-0.2
3,788,770	-		EFB2_03622	0.35	-0.0
3,788,785	+		EFB2_03622	0.40	-2.4
3,788,786	-		EFB2_03622	0.40	-0.6
3,788,790	+		EFB2_03622	0.42	+1.1
3,788,790	+		EFB2_03622	0.42	-3.2
3,788,791	-		EFB2_03622	0.42	+1.4
3,788,791	-		EFB2_03622	0.42	+0.2
3,788,795	+		EFB2_03622	0.43	-2.8
3,788,795	+		EFB2_03622	0.43	-1.6
3,788,795	+		EFB2_03622	0.43	+0.3
3,788,795	+		EFB2_03622	0.43	-1.9
3,788,795	+		EFB2_03622	0.43	+2.0
3,788,795	+		EFB2_03622	0.43	+1.8
3,788,795	+		EFB2_03622	0.43	+0.1
3,788,795	+		EFB2_03622	0.43	-1.7
3,788,795	+		EFB2_03622	0.43	-1.1
3,788,795	+		EFB2_03622	0.43	-0.6
3,788,796	-		EFB2_03622	0.43	+0.6
3,788,796	-		EFB2_03622	0.43	+1.3
3,788,832	+		EFB2_03622	0.55	+0.6
3,788,833	-		EFB2_03622	0.55	-0.5
3,788,859	+		EFB2_03622	0.63	+0.5
3,788,859	+		EFB2_03622	0.63	+1.0
3,788,860	-		EFB2_03622	0.64	-2.4
3,788,897	+		EFB2_03622	0.76	+0.4
3,788,897	+		EFB2_03622	0.76	-0.3
3,788,898	-		EFB2_03622	0.76	+0.3
3,788,898	-		EFB2_03622	0.76	+0.6
3,788,911	+		EFB2_03622	0.80	-0.2
3,788,911	+		EFB2_03622	0.80	+0.2
3,788,911	+		EFB2_03622	0.80	+0.9
3,788,911	+		EFB2_03622	0.80	-0.8
3,788,911	+		EFB2_03622	0.80	+1.2
3,788,912	-		EFB2_03622	0.80	+1.1
3,788,912	-		EFB2_03622	0.80	+1.3
3,788,923	+		EFB2_03622	0.84	-0.0
3,788,923	+		EFB2_03622	0.84	+2.1
3,788,924	-		EFB2_03622	0.84	+0.0
3,788,924	-		EFB2_03622	0.84	+0.4
3,788,924	-		EFB2_03622	0.84	-0.5
3,788,944	+				-0.2
3,788,957	-				-1.9
3,788,957	-				+1.0
3,788,968	+				-2.0
3,788,968	+				-0.6
3,788,968	+				+0.5
3,788,968	+				-2.0
3,788,968	+				+0.6
3,788,968	+				-0.1
3,788,968	+				+1.1
3,788,968	+				-1.6
3,788,968	+				-1.1
3,788,968	+				+2.1
3,788,968	+				+0.6
3,788,968	+				-0.6
3,788,968	+				-2.0
3,788,968	+				-1.6
3,788,969	-				-0.0
3,788,969	-				-1.8
3,788,969	-				+0.5
3,788,969	-				-3.6
3,788,969	-				+2.5
3,788,969	-				-2.7
3,788,969	-				-2.5
3,788,969	-				-2.7
3,788,969	-				+1.4
3,788,969	-				+0.5
3,788,969	-				+0.8
3,788,969	-				+0.2
3,788,969	-				-0.4
3,788,969	-				+0.7
3,788,969	-				+0.2
3,788,969	-				-2.7
3,788,969	-				+0.1
3,788,969	-				+0.7
3,788,969	-				-2.1
3,788,969	-				-0.6
3,788,969	-				-2.7
3,788,969	-				-0.4
3,788,969	-				-1.6
3,788,969	-				+1.3
3,788,969	-				-2.9
3,788,969	-				-1.0
3,788,969	-				-0.0
3,788,969	-				-0.9
3,788,969	-				-0.4
3,788,981	+				+0.2
3,788,981	+				+2.0
3,788,981	+				-1.8
3,788,982	-				+0.4
3,788,982	-				-0.7
3,788,982	-				-1.1
3,788,982	-				+1.2
3,789,019	+				-0.9
3,789,019	+				-0.7
3,789,023	+				+1.7
3,789,023	+				-0.5
3,789,023	+				+1.7
3,789,023	+				+1.2
3,789,023	+				-3.6
3,789,023	+				+1.6
3,789,023	+				+0.6
3,789,023	+				-0.4
3,789,023	+				-0.1
3,789,023	+				+0.1
3,789,023	+				+1.0
3,789,024	-				-1.1
3,789,024	-				+0.0
3,789,024	-				+2.2
3,789,026	+				-0.7
3,789,037	-				-2.1
3,789,055	+				+2.4
3,789,055	+				+0.2
3,789,055	+				-0.2
3,789,055	+				-0.5
3,789,055	+				-0.4
3,789,056	-				+1.0
3,789,056	-				+4.4
3,789,056	-				-4.2
3,789,056	-				+1.4
3,789,056	-				+0.6
3,789,056	-				-0.8
3,789,056	-				-0.9
3,789,056	-				+0.6
3,789,065	+				-0.6
3,789,065	+				+0.8
3,789,065	+				-0.5
3,789,065	+				+1.0
3,789,065	+				+1.8
3,789,066	-				+0.6
3,789,066	-				+0.9
3,789,066	-				-2.3
3,789,066	-				+0.1
3,789,066	-				-1.4
3,789,069	+				+0.3
3,789,099	+				-0.3
3,789,099	+				+1.1
3,789,099	+				-0.6
3,789,099	+				+0.9
3,789,099	+				+0.2
3,789,100	-				-1.2
3,789,100	-				+2.1
3,789,100	-				-0.9
3,789,100	-				-1.2
3,789,100	-				+0.7
3,789,100	-				+0.2
3,789,100	-				+0.1
3,789,100	-				+0.5
3,789,109	-				+0.1
3,789,109	-				-2.6
3,789,109	-				-1.1
3,789,154	+				-3.1
3,789,154	+				+1.3
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