Strain Fitness in Escherichia fergusonii Becca around EFB2_03577

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
3,735,474	+				-1.5
3,735,474	+				-0.7
3,735,474	+				+0.5
3,735,474	+				+0.7
3,735,474	+				-0.9
3,735,475	-				+1.9
3,735,475	-				+2.3
3,735,475	-				+2.2
3,735,475	-				+1.0
3,735,475	-				+0.7
3,735,523	-				+0.4
3,735,529	+				-0.1
3,735,529	+				-1.4
3,735,529	+				+0.1
3,735,529	+				-0.1
3,735,529	+				+0.6
3,735,530	-				+0.6
3,735,530	-				-2.0
3,735,530	-				+0.7
3,735,530	-				+0.7
3,735,530	-				-0.9
3,735,530	-				-2.0
3,735,549	+				+0.9
3,735,550	-				+1.0
3,735,591	+		EFB2_03576	0.15	-0.9
3,735,591	+		EFB2_03576	0.15	+0.1
3,735,591	+		EFB2_03576	0.15	+0.3
3,735,592	+		EFB2_03576	0.15	-3.6
3,735,592	-		EFB2_03576	0.15	-3.9
3,735,592	-		EFB2_03576	0.15	-0.4
3,735,592	-		EFB2_03576	0.15	+1.1
3,735,597	+		EFB2_03576	0.15	+1.7
3,735,598	-		EFB2_03576	0.15	-3.3
3,735,598	-		EFB2_03576	0.15	-0.1
3,735,598	-		EFB2_03576	0.15	-1.3
3,735,598	-		EFB2_03576	0.15	-0.9
3,735,598	-		EFB2_03576	0.15	-0.1
3,735,697	-		EFB2_03576	0.28	+0.1
3,735,697	-		EFB2_03576	0.28	+1.9
3,735,744	+		EFB2_03576	0.34	+0.6
3,735,777	+		EFB2_03576	0.38	-0.7
3,735,777	+		EFB2_03576	0.38	+0.2
3,735,777	+		EFB2_03576	0.38	-0.9
3,735,778	-		EFB2_03576	0.38	-4.0
3,735,778	-		EFB2_03576	0.38	-0.4
3,735,813	+		EFB2_03576	0.43	-3.1
3,735,814	-		EFB2_03576	0.43	-1.3
3,735,886	+		EFB2_03576	0.52	-2.6
3,735,886	+		EFB2_03576	0.52	-1.7
3,735,886	+		EFB2_03576	0.52	-1.3
3,735,886	+		EFB2_03576	0.52	+1.3
3,735,886	+		EFB2_03576	0.52	-1.2
3,735,886	+		EFB2_03576	0.52	-2.0
3,735,887	-		EFB2_03576	0.52	+1.1
3,735,887	-		EFB2_03576	0.52	+0.7
3,735,887	-		EFB2_03576	0.52	+1.8
3,735,887	-		EFB2_03576	0.52	-0.5
3,735,887	-		EFB2_03576	0.52	+0.7
3,735,887	-		EFB2_03576	0.52	+0.7
3,735,905	+		EFB2_03576	0.54	+0.5
3,735,905	+		EFB2_03576	0.54	-0.3
3,735,905	+		EFB2_03576	0.54	+1.2
3,735,905	+		EFB2_03576	0.54	-0.5
3,735,905	+		EFB2_03576	0.54	+0.4
3,735,905	+		EFB2_03576	0.54	-0.8
3,735,905	+		EFB2_03576	0.54	-0.3
3,735,905	+		EFB2_03576	0.54	-0.1
3,735,905	+		EFB2_03576	0.54	-3.6
3,735,905	+		EFB2_03576	0.54	-1.5
3,735,905	+		EFB2_03576	0.54	+0.9
3,735,905	+		EFB2_03576	0.54	-0.8
3,735,906	-		EFB2_03576	0.54	-0.2
3,735,906	-		EFB2_03576	0.54	+0.4
3,735,906	-		EFB2_03576	0.54	-0.0
3,735,918	+		EFB2_03576	0.56	+1.1
3,735,918	+		EFB2_03576	0.56	+0.4
3,735,930	+		EFB2_03576	0.57	-0.4
3,735,930	+		EFB2_03576	0.57	-3.5
3,735,930	+		EFB2_03576	0.57	-2.3
3,735,930	+		EFB2_03576	0.57	+0.3
3,735,930	+		EFB2_03576	0.57	+1.2
3,735,930	+		EFB2_03576	0.57	-2.3
3,735,930	+		EFB2_03576	0.57	+1.5
3,735,930	+		EFB2_03576	0.57	+1.2
3,735,930	+		EFB2_03576	0.57	+0.5
3,735,930	+		EFB2_03576	0.57	-2.6
3,735,930	+		EFB2_03576	0.57	-1.0
3,735,931	-		EFB2_03576	0.57	-0.5
3,735,931	-		EFB2_03576	0.57	+0.2
3,735,931	-		EFB2_03576	0.57	+1.1
3,735,931	-		EFB2_03576	0.57	-1.6
3,735,931	-		EFB2_03576	0.57	-0.2
3,735,931	-		EFB2_03576	0.57	+1.2
3,735,931	-		EFB2_03576	0.57	+0.1
3,735,931	-		EFB2_03576	0.57	-0.2
3,735,931	-		EFB2_03576	0.57	-1.7
3,735,931	-		EFB2_03576	0.57	+0.0
3,736,017	+		EFB2_03576	0.68	+0.6
3,736,017	+		EFB2_03576	0.68	-0.8
3,736,018	-		EFB2_03576	0.68	+1.6
3,736,018	-		EFB2_03576	0.68	+0.4
3,736,103	+		EFB2_03576	0.79	-0.5
3,736,103	+		EFB2_03576	0.79	+0.6
3,736,103	+		EFB2_03576	0.79	+1.3
3,736,103	+		EFB2_03576	0.79	-1.8
3,736,103	+		EFB2_03576	0.79	+0.1
3,736,103	+		EFB2_03576	0.79	-1.3
3,736,103	+		EFB2_03576	0.79	-0.7
3,736,103	+		EFB2_03576	0.79	+0.3
3,736,103	+		EFB2_03576	0.79	-2.0
3,736,103	+		EFB2_03576	0.79	+1.4
3,736,104	-		EFB2_03576	0.79	-0.5
3,736,104	-		EFB2_03576	0.79	+0.1
3,736,104	-		EFB2_03576	0.79	-0.3
3,736,104	-		EFB2_03576	0.79	+0.9
3,736,104	-		EFB2_03576	0.79	-3.5
3,736,104	-		EFB2_03576	0.79	-0.7
3,736,104	-		EFB2_03576	0.79	+2.0
3,736,104	-		EFB2_03576	0.79	+0.8
3,736,116	+		EFB2_03576	0.81	-1.7
3,736,116	+		EFB2_03576	0.81	+1.4
3,736,116	+		EFB2_03576	0.81	-0.0
3,736,116	+		EFB2_03576	0.81	+0.5
3,736,116	+		EFB2_03576	0.81	-0.2
3,736,116	+		EFB2_03576	0.81	-1.5
3,736,116	+		EFB2_03576	0.81	+0.3
3,736,117	-		EFB2_03576	0.81	-0.0
3,736,117	-		EFB2_03576	0.81	+0.7
3,736,117	-		EFB2_03576	0.81	-1.4
3,736,117	-		EFB2_03576	0.81	-2.6
3,736,117	-		EFB2_03576	0.81	-1.8
3,736,117	-		EFB2_03576	0.81	+1.1
3,736,117	-		EFB2_03576	0.81	-0.1
3,736,135	+		EFB2_03576	0.83	+1.7
3,736,135	+		EFB2_03576	0.83	-2.7
3,736,135	+		EFB2_03576	0.83	-1.2
3,736,136	-		EFB2_03576	0.83	+1.9
3,736,136	-		EFB2_03576	0.83	+0.6
3,736,136	-		EFB2_03576	0.83	-2.0
3,736,136	-		EFB2_03576	0.83	+1.1
3,736,136	-		EFB2_03576	0.83	+2.4
3,736,136	-		EFB2_03576	0.83	-1.0
3,736,136	-		EFB2_03576	0.83	-2.5
3,736,136	-		EFB2_03576	0.83	-2.7
3,736,182	-		EFB2_03576	0.89	+0.4
3,736,182	-		EFB2_03576	0.89	-2.5
3,736,204	+				-1.7
3,736,204	+				-0.6
3,736,204	+				-0.1
3,736,205	-				-2.3
3,736,205	-				+1.7
3,736,205	-				-0.4
3,736,205	-				+2.2
3,736,205	-				-1.3
3,736,226	+				-1.1
3,736,226	+				+0.4
3,736,226	+				+1.3
3,736,226	+				+1.1
3,736,226	+				-0.7
3,736,226	+				+2.9
3,736,226	+				+0.5
3,736,226	+				-0.3
3,736,226	+				-1.7
3,736,226	+				-0.1
3,736,226	+				-0.7
3,736,226	+				+0.8
3,736,226	+				-0.6
3,736,226	+				+0.9
3,736,226	+				+3.1
3,736,226	+				+2.1
3,736,226	+				+0.2
3,736,226	+				-0.5
3,736,226	+				-1.8
3,736,226	+				-0.6
3,736,227	-				-1.1
3,736,227	-				+1.4
3,736,227	-				-0.6
3,736,227	-				-0.8
3,736,227	-				+0.5
3,736,227	-				+1.7
3,736,227	-				-0.1
3,736,227	-				+0.2
3,736,227	-				-1.9
3,736,227	-				+1.7
3,736,227	-				+0.4
3,736,227	-				-1.7
3,736,227	-				+0.6
3,736,227	-				+0.2
3,736,227	-				-2.3
3,736,227	-				+1.0
3,736,227	-				-1.3
3,736,227	-				-1.0
3,736,234	+				-3.1
3,736,235	-				+0.5
3,736,235	-				+0.7
3,736,235	-				-0.2
3,736,283	-				+0.2
3,736,323	+				-1.8
3,736,323	+				+0.0
3,736,323	+				-0.8
3,736,323	+				+1.1
3,736,323	+				+0.3
3,736,324	-				-3.2
3,736,324	-				-0.2
3,736,324	-				-0.8
3,736,324	-				+0.1
3,736,324	-				-1.0
3,736,324	-				-0.1
3,736,326	+				-0.3
3,736,326	+				-1.8
3,736,326	+				-1.7
3,736,326	+				+1.1
3,736,326	+				+1.2
3,736,326	+				-2.3
3,736,326	+				+0.5
3,736,326	+				+4.2
3,736,326	+				+0.1
3,736,326	+				+0.7
3,736,327	-				+0.1
3,736,327	-				-0.6
3,736,327	-				-0.3
3,736,327	-				-1.6
3,736,327	-				+0.5
3,736,339	+				-1.7
3,736,340	-				+0.6
3,736,352	-				-0.4
3,736,352	-				-0.1
3,736,352	-				-0.8
3,736,352	-				+0.2
3,736,352	-				-2.8
3,736,387	+				+1.1
3,736,387	+				-0.3
3,736,388	-				+0.6
3,736,393	+				-0.4
3,736,393	+				+0.2
3,736,393	+				-3.7
3,736,394	-				-4.1
3,736,394	-				+0.6
3,736,394	-				-0.3
3,736,432	+				+0.8
3,736,432	+				+0.5
3,736,432	+				-1.5
3,736,432	+				-0.1
3,736,432	+				-0.6
3,736,432	+				+1.5
3,736,432	+				-0.5
3,736,432	+				-0.3
3,736,432	+				+0.6
3,736,433	-				+1.1
3,736,433	-				+1.1
3,736,433	-				+1.8
3,736,433	-				-0.6
3,736,433	-				-3.6
3,736,433	-				+0.6
3,736,433	-				-0.0
3,736,433	-				+1.1
3,736,455	+				-2.2
3,736,470	-				+1.4
3,736,470	-				+1.2
3,736,470	-				+1.9
3,736,470	-				-0.7
3,736,487	+				+1.0
3,736,487	+				+0.5
3,736,487	+				+1.5
3,736,530	+		EFB2_03577	0.12	+0.7
3,736,530	+		EFB2_03577	0.12	+2.3
3,736,530	+		EFB2_03577	0.12	+1.2
3,736,530	+		EFB2_03577	0.12	-2.8
3,736,530	+		EFB2_03577	0.12	-1.8
3,736,530	+		EFB2_03577	0.12	-1.1
3,736,531	-		EFB2_03577	0.12	+0.8
3,736,531	-		EFB2_03577	0.12	+0.2
3,736,531	-		EFB2_03577	0.12	+0.5
3,736,531	-		EFB2_03577	0.12	-1.6
3,736,531	-		EFB2_03577	0.12	+0.6
3,736,606	-		EFB2_03577	0.28	-1.8
3,736,637	+		EFB2_03577	0.34	+0.3
3,736,697	-		EFB2_03577	0.47	-1.0
3,736,697	-		EFB2_03577	0.47	-1.2
3,736,782	-		EFB2_03577	0.64	+0.1
3,736,847	+		EFB2_03577	0.78	+1.7
3,736,847	+		EFB2_03577	0.78	+0.5
3,736,847	+		EFB2_03577	0.78	+0.7
3,736,847	+		EFB2_03577	0.78	-0.9
3,736,847	+		EFB2_03577	0.78	-1.2
3,736,847	+		EFB2_03577	0.78	-3.7
3,736,847	+		EFB2_03577	0.78	-0.0
3,736,847	+		EFB2_03577	0.78	-1.6
3,736,847	+		EFB2_03577	0.78	+0.2
3,736,848	-		EFB2_03577	0.78	-0.1
3,736,848	-		EFB2_03577	0.78	-3.0
3,736,848	-		EFB2_03577	0.78	+1.2
3,736,848	-		EFB2_03577	0.78	+0.1
3,736,848	-		EFB2_03577	0.78	-3.1
3,736,848	-		EFB2_03577	0.78	+0.5
3,736,848	-		EFB2_03577	0.78	-2.0
3,736,851	+		EFB2_03577	0.79	+0.0
3,736,851	+		EFB2_03577	0.79	-1.7
3,736,851	+		EFB2_03577	0.79	-1.8
3,736,851	+		EFB2_03577	0.79	+1.2
3,736,851	+		EFB2_03577	0.79	+0.2
3,736,851	+		EFB2_03577	0.79	+0.1
3,736,851	+		EFB2_03577	0.79	-0.7
3,736,851	+		EFB2_03577	0.79	+1.1
3,736,851	+		EFB2_03577	0.79	+0.2
3,736,851	+		EFB2_03577	0.79	+0.5
3,736,852	-		EFB2_03577	0.79	-2.8
3,736,852	-		EFB2_03577	0.79	+0.1
3,736,852	-		EFB2_03577	0.79	-1.2
3,736,852	-		EFB2_03577	0.79	-1.5
3,736,852	-		EFB2_03577	0.79	-0.4
3,736,852	-		EFB2_03577	0.79	-0.2
3,736,852	-		EFB2_03577	0.79	+0.6
3,736,852	-		EFB2_03577	0.79	-2.8
3,736,852	-		EFB2_03577	0.79	+0.7
3,736,852	-		EFB2_03577	0.79	+0.3
3,736,852	-		EFB2_03577	0.79	-0.7
3,736,852	-		EFB2_03577	0.79	+0.9
3,736,913	-				-0.3
3,736,913	-				-2.0
3,736,913	-				+1.1
3,736,950	+				-0.3
3,736,951	-				+0.8
3,736,951	-				-1.9
3,736,951	-				+3.4
3,736,991	-				+1.5
3,736,991	-				-0.1
3,737,020	+				-0.9
3,737,020	+				-0.7
3,737,021	-				-0.3
3,737,021	-				+0.0
3,737,021	-				-0.9
3,737,021	-				-1.0
3,737,056	+				-0.8
3,737,056	+				+1.3
3,737,056	+				-1.0
3,737,056	+				-1.7
3,737,056	+				-2.5
3,737,056	+				+0.5
3,737,056	+				+1.1
3,737,056	+				+1.0
3,737,056	+				-0.9
3,737,056	+				-3.6
3,737,056	+				+1.5
3,737,056	+				+0.3
3,737,056	+				-1.0
3,737,056	+				+1.0
3,737,056	+				+1.5
3,737,056	+				-0.3
3,737,056	+				-2.0
3,737,057	-				+0.9
3,737,057	-				-0.6
3,737,057	-				-0.1
3,737,057	-				-0.3
3,737,057	-				-1.8
3,737,057	-				+2.2
3,737,057	-				-1.0
3,737,057	-				-0.7
3,737,057	-				+1.2
3,737,057	-				-1.5
3,737,057	-				+0.9
3,737,057	-				-0.8
3,737,057	-				+1.5
3,737,057	-				-0.1
3,737,057	-				-0.2
3,737,057	-				+1.3
3,737,081	+				+1.3
3,737,081	+				-1.2
3,737,082	-				+1.5
3,737,082	-				-0.8
3,737,082	-				+0.9
3,737,098	+				-1.6
3,737,099	-				-0.7
3,737,099	-				+0.9
3,737,099	-				+0.6
3,737,099	-				+0.7
3,737,099	-				+0.6
3,737,099	-				+2.1
3,737,099	-				+1.1
3,737,112	-				+1.9
3,737,155	-		EFB2_03578	0.10	-2.6
3,737,155	-		EFB2_03578	0.10	-0.2
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