Strain Fitness in Escherichia fergusonii Becca around EFB2_02434

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
2,573,415	-		EFB2_02433	0.45	+0.8
2,573,421	+		EFB2_02433	0.46	+0.7
2,573,421	+		EFB2_02433	0.46	-0.9
2,573,421	+		EFB2_02433	0.46	-1.5
2,573,422	-		EFB2_02433	0.46	-1.8
2,573,422	-		EFB2_02433	0.46	+1.9
2,573,422	-		EFB2_02433	0.46	+1.5
2,573,422	-		EFB2_02433	0.46	-1.2
2,573,422	-		EFB2_02433	0.46	+0.6
2,573,454	-		EFB2_02433	0.49	+0.9
2,573,454	-		EFB2_02433	0.49	+0.5
2,573,505	-		EFB2_02433	0.53	-0.5
2,573,505	-		EFB2_02433	0.53	-0.4
2,573,505	-		EFB2_02433	0.53	-1.7
2,573,505	-		EFB2_02433	0.53	+0.7
2,573,509	+		EFB2_02433	0.53	-3.4
2,573,509	+		EFB2_02433	0.53	+1.6
2,573,509	+		EFB2_02433	0.53	+1.2
2,573,509	+		EFB2_02433	0.53	-1.3
2,573,509	+		EFB2_02433	0.53	+2.1
2,573,509	+		EFB2_02433	0.53	-0.3
2,573,509	+		EFB2_02433	0.53	-1.3
2,573,510	-		EFB2_02433	0.53	-1.8
2,573,510	-		EFB2_02433	0.53	-3.1
2,573,510	-		EFB2_02433	0.53	-0.5
2,573,510	-		EFB2_02433	0.53	+1.8
2,573,510	-		EFB2_02433	0.53	-1.3
2,573,527	+		EFB2_02433	0.55	+1.3
2,573,530	+		EFB2_02433	0.55	-1.4
2,573,531	-		EFB2_02433	0.55	+0.3
2,573,531	-		EFB2_02433	0.55	-0.1
2,573,531	-		EFB2_02433	0.55	+0.1
2,573,577	+		EFB2_02433	0.59	+1.4
2,573,577	+		EFB2_02433	0.59	-1.0
2,573,578	-		EFB2_02433	0.59	-0.4
2,573,609	+		EFB2_02433	0.62	-1.6
2,573,609	+		EFB2_02433	0.62	-0.3
2,573,609	+		EFB2_02433	0.62	-2.5
2,573,609	+		EFB2_02433	0.62	+1.3
2,573,609	+		EFB2_02433	0.62	-0.2
2,573,609	+		EFB2_02433	0.62	-2.0
2,573,610	-		EFB2_02433	0.62	-1.0
2,573,610	-		EFB2_02433	0.62	+0.1
2,573,610	-		EFB2_02433	0.62	-2.0
2,573,610	-		EFB2_02433	0.62	+0.1
2,573,610	-		EFB2_02433	0.62	+1.5
2,573,610	-		EFB2_02433	0.62	-1.4
2,573,610	-		EFB2_02433	0.62	-0.5
2,573,610	-		EFB2_02433	0.62	-0.5
2,573,612	+		EFB2_02433	0.62	+0.3
2,573,613	-		EFB2_02433	0.62	-0.5
2,573,613	-		EFB2_02433	0.62	+1.0
2,573,613	-		EFB2_02433	0.62	-2.0
2,573,613	-		EFB2_02433	0.62	-0.7
2,573,643	-		EFB2_02433	0.65	+0.3
2,573,643	-		EFB2_02433	0.65	+0.3
2,573,643	-		EFB2_02433	0.65	-1.6
2,573,643	-		EFB2_02433	0.65	+0.2
2,573,775	-		EFB2_02433	0.76	+0.7
2,573,786	+		EFB2_02433	0.77	-0.0
2,573,786	+		EFB2_02433	0.77	-0.3
2,573,786	+		EFB2_02433	0.77	-2.0
2,573,786	+		EFB2_02433	0.77	-1.6
2,573,786	+		EFB2_02433	0.77	-2.4
2,573,786	+		EFB2_02433	0.77	-1.3
2,573,786	+		EFB2_02433	0.77	+1.4
2,573,786	+		EFB2_02433	0.77	+0.5
2,573,786	+		EFB2_02433	0.77	+0.8
2,573,786	+		EFB2_02433	0.77	+1.1
2,573,787	-		EFB2_02433	0.77	-2.3
2,573,787	-		EFB2_02433	0.77	+0.2
2,573,787	-		EFB2_02433	0.77	-3.3
2,573,787	-		EFB2_02433	0.77	+1.5
2,573,787	-		EFB2_02433	0.77	-0.0
2,573,787	-		EFB2_02433	0.77	-0.7
2,573,787	-		EFB2_02433	0.77	-0.9
2,573,787	-		EFB2_02433	0.77	-0.3
2,573,800	+		EFB2_02433	0.78	-2.3
2,573,860	+		EFB2_02433	0.83	-1.8
2,573,860	+		EFB2_02433	0.83	+2.4
2,573,860	+		EFB2_02433	0.83	-0.6
2,573,860	+		EFB2_02433	0.83	-0.9
2,573,860	+		EFB2_02433	0.83	-0.3
2,573,861	-		EFB2_02433	0.83	-1.0
2,573,861	-		EFB2_02433	0.83	+0.3
2,573,861	-		EFB2_02433	0.83	-1.4
2,573,861	-		EFB2_02433	0.83	+1.0
2,573,861	-		EFB2_02433	0.83	-2.1
2,573,861	-		EFB2_02433	0.83	+0.5
2,573,861	-		EFB2_02433	0.83	+1.0
2,573,861	-		EFB2_02433	0.83	-0.3
2,573,861	-		EFB2_02433	0.83	-1.8
2,573,876	+		EFB2_02433	0.84	-0.7
2,573,876	+		EFB2_02433	0.84	+1.3
2,573,886	-		EFB2_02433	0.85	+2.1
2,573,895	+		EFB2_02433	0.86	-0.0
2,573,895	+		EFB2_02433	0.86	-1.1
2,573,895	+		EFB2_02433	0.86	-2.5
2,573,895	+		EFB2_02433	0.86	+2.9
2,573,895	+		EFB2_02433	0.86	-2.3
2,573,895	+		EFB2_02433	0.86	+2.4
2,573,896	-		EFB2_02433	0.86	+0.7
2,573,896	-		EFB2_02433	0.86	-0.3
2,573,896	-		EFB2_02433	0.86	-0.6
2,573,896	-		EFB2_02433	0.86	-2.5
2,573,896	-		EFB2_02433	0.86	+2.9
2,573,896	-		EFB2_02433	0.86	-2.0
2,573,896	-		EFB2_02433	0.86	-3.1
2,573,896	-		EFB2_02433	0.86	-0.7
2,573,896	-		EFB2_02433	0.86	+1.0
2,573,941	+		EFB2_02433	0.90	-1.7
2,573,941	+		EFB2_02433	0.90	+0.8
2,573,941	+		EFB2_02433	0.90	-2.0
2,573,941	+		EFB2_02433	0.90	-0.5
2,573,941	+		EFB2_02433	0.90	-2.2
2,573,942	-		EFB2_02433	0.90	+1.1
2,573,942	-		EFB2_02433	0.90	+0.9
2,573,942	-		EFB2_02433	0.90	-1.3
2,573,986	+				-0.5
2,573,987	-				+2.0
2,573,987	-				-0.5
2,573,996	-				+1.5
2,574,017	-				+0.7
2,574,026	+				-0.3
2,574,035	+				+1.2
2,574,035	+				+0.1
2,574,036	-				+1.4
2,574,064	+				+0.3
2,574,065	-				-1.0
2,574,108	+				+0.6
2,574,108	+				+0.7
2,574,108	+				+0.0
2,574,129	+				+3.1
2,574,129	+				-1.0
2,574,129	+				+0.8
2,574,129	+				-0.1
2,574,129	+				+2.3
2,574,129	+				+0.9
2,574,129	+				+1.3
2,574,201	+				-0.5
2,574,201	+				-1.0
2,574,201	+				+1.1
2,574,201	+				-1.2
2,574,202	-				-2.9
2,574,202	-				+0.3
2,574,214	+				+1.8
2,574,248	+				+0.1
2,574,248	+				+1.6
2,574,263	-				+0.6
2,574,263	-				-0.5
2,574,263	-				-2.9
2,574,263	-				-1.4
2,574,265	+				+2.0
2,574,265	+				-0.7
2,574,265	+				-2.7
2,574,266	-				+1.1
2,574,266	-				+1.3
2,574,293	+				+2.0
2,574,293	+				+0.6
2,574,293	+				+2.1
2,574,293	+				+1.2
2,574,293	+				-0.7
2,574,293	+				+0.3
2,574,293	+				+1.8
2,574,293	+				-2.2
2,574,293	+				+4.0
2,574,294	-				-2.4
2,574,294	-				-2.0
2,574,294	-				+1.2
2,574,294	-				+2.0
2,574,294	-				+1.1
2,574,294	-				+1.1
2,574,294	-				+0.4
2,574,294	-				+1.6
2,574,294	-				+0.9
2,574,294	-				-1.0
2,574,297	+				-0.3
2,574,297	+				-2.9
2,574,297	+				-1.7
2,574,297	+				+1.3
2,574,297	+				-2.1
2,574,297	+				-0.3
2,574,297	+				-1.4
2,574,297	+				-1.0
2,574,297	+				-0.3
2,574,297	+				+1.5
2,574,297	+				+0.3
2,574,297	+				+0.4
2,574,297	+				+1.2
2,574,297	+				+2.0
2,574,297	+				-2.4
2,574,297	+				-1.0
2,574,297	+				+0.7
2,574,297	+				-0.5
2,574,297	+				-0.5
2,574,297	+				-1.9
2,574,298	-				+1.5
2,574,298	-				+1.1
2,574,298	-				-1.7
2,574,298	-				-0.0
2,574,298	-				-0.5
2,574,298	-				-1.7
2,574,298	-				+2.0
2,574,298	-				-0.1
2,574,298	-				-0.6
2,574,298	-				-0.6
2,574,311	+				-1.2
2,574,319	+				-1.7
2,574,325	+				-2.0
2,574,325	+				-0.3
2,574,326	-				+2.3
2,574,326	-				+0.5
2,574,326	-				+3.5
2,574,336	+				+0.2
2,574,336	+				-0.5
2,574,336	+				-0.8
2,574,336	+				-1.5
2,574,336	+				-1.9
2,574,337	-				+2.3
2,574,337	-				+0.0
2,574,337	-				-0.9
2,574,337	-				-1.9
2,574,338	+				-2.2
2,574,338	+				+0.5
2,574,338	+				-1.4
2,574,338	+				-1.8
2,574,338	+				-0.9
2,574,338	+				-2.6
2,574,338	+				-1.5
2,574,338	+				-2.2
2,574,338	+				+1.2
2,574,338	+				+0.8
2,574,339	-				-0.5
2,574,339	-				+3.3
2,574,339	-				+1.5
2,574,339	-				-1.8
2,574,339	-				+0.6
2,574,339	-				+4.6
2,574,339	-				+0.3
2,574,339	-				-0.5
2,574,344	+				+0.8
2,574,344	+				+1.1
2,574,344	+				-1.3
2,574,344	+				+0.6
2,574,344	+				-2.4
2,574,344	+				-0.4
2,574,344	+				+1.3
2,574,344	+				+0.0
2,574,344	+				-0.5
2,574,344	+				-0.3
2,574,344	+				+1.6
2,574,344	+				-3.3
2,574,344	+				+1.3
2,574,344	+				-1.6
2,574,344	+				-1.1
2,574,344	+				+0.0
2,574,344	+				+0.3
2,574,344	+				+1.0
2,574,345	-				-0.7
2,574,345	-				+1.1
2,574,345	-				-0.8
2,574,345	-				+2.3
2,574,345	-				+1.7
2,574,345	-				+2.3
2,574,345	-				+1.4
2,574,345	-				-1.0
2,574,345	-				-1.8
2,574,345	-				+1.3
2,574,345	-				-0.1
2,574,345	-				+1.5
2,574,345	-				+2.6
2,574,345	-				+2.3
2,574,345	-				-1.7
2,574,345	-				-2.2
2,574,345	-				-0.7
2,574,363	+				-1.2
2,574,363	+				+0.7
2,574,363	+				-0.7
2,574,363	+				+1.1
2,574,363	+				-1.6
2,574,363	+				-0.3
2,574,363	+				+0.2
2,574,363	+				+3.7
2,574,363	+				-1.2
2,574,363	+				+1.5
2,574,363	+				-0.8
2,574,363	+				+0.7
2,574,363	+				-0.2
2,574,363	+				-1.8
2,574,363	+				-2.2
2,574,364	-				+1.0
2,574,364	-				+0.4
2,574,364	-				-0.6
2,574,364	-				+0.1
2,574,364	-				-2.1
2,574,364	-				+1.1
2,574,364	-				-0.3
2,574,364	-				-2.5
2,574,364	-				-2.7
2,574,364	-				-0.6
2,574,364	-				-2.2
2,574,364	-				-0.0
2,574,364	-				-0.3
2,574,365	+				-3.1
2,574,365	+				-0.7
2,574,365	+				-0.3
2,574,365	+				+0.7
2,574,365	+				+2.3
2,574,365	+				+2.4
2,574,365	+				+2.0
2,574,365	+				-0.7
2,574,365	+				+1.0
2,574,365	+				+2.0
2,574,365	+				-0.8
2,574,365	+				-0.1
2,574,365	+				-1.6
2,574,365	+				-1.4
2,574,365	+				-1.2
2,574,365	+				-1.8
2,574,365	+				-1.6
2,574,365	+				+0.7
2,574,366	-				-0.7
2,574,366	-				-0.3
2,574,366	-				+0.8
2,574,366	-				+2.2
2,574,366	-				-0.9
2,574,366	-				-2.8
2,574,366	-				-1.6
2,574,366	-				+0.1
2,574,366	-				-2.3
2,574,366	-				-0.5
2,574,366	-				-0.0
2,574,366	-				-0.7
2,574,366	-				-0.4
2,574,366	-				-1.4
2,574,366	-				+0.6
2,574,366	-				-0.9
2,574,366	-				-2.9
2,574,366	-				-2.0
2,574,367	+				-0.4
2,574,367	+				-0.1
2,574,367	+				+0.7
2,574,367	+				-2.5
2,574,367	+				-0.9
2,574,367	+				-0.9
2,574,367	+				+0.7
2,574,367	+				+0.7
2,574,367	+				-0.6
2,574,367	+				-0.4
2,574,367	+				-0.2
2,574,368	-				-0.1
2,574,368	-				-2.7
2,574,368	-				+0.5
2,574,368	-				+3.3
2,574,368	-				-0.9
2,574,368	-				-0.0
2,574,374	+				-1.4
2,574,374	+				+1.1
2,574,374	+				-1.5
2,574,374	+				-1.2
2,574,374	+				-0.3
2,574,374	+				-0.4
2,574,374	+				-1.0
2,574,375	-				-2.4
2,574,375	-				+1.3
2,574,375	-				+0.5
2,574,375	-				+1.0
2,574,375	-				+1.0
2,574,375	-				+3.0
2,574,375	-				+0.3
2,574,375	-				+0.9
2,574,375	-				-2.5
2,574,375	-				-1.9
2,574,375	-				+2.4
2,574,378	-				-2.0
2,574,399	+				-0.4
2,574,399	+				-0.0
2,574,399	+				-0.2
2,574,400	-				-0.5
2,574,450	+				-0.9
2,574,450	+				+0.9
2,574,450	+				-0.4
2,574,450	+				+1.9
2,574,450	+				+1.3
2,574,450	+				-2.1
2,574,450	+				+2.0
2,574,450	+				-0.0
2,574,450	+				+1.5
2,574,450	+				-0.5
2,574,451	-				+0.4
2,574,451	-				-0.7
2,574,451	-				-1.2
2,574,451	-				+0.4
2,574,451	-				-1.7
2,574,451	-				-0.4
2,574,451	-				+0.3
2,574,451	-				+0.6
2,574,561	+		EFB2_02434	0.18	-1.4
2,574,562	-		EFB2_02434	0.18	+0.9
2,574,562	-		EFB2_02434	0.18	+0.3
2,574,562	-		EFB2_02434	0.18	-0.3
2,574,573	+		EFB2_02434	0.19	-0.0
2,574,573	+		EFB2_02434	0.19	-1.3
2,574,573	+		EFB2_02434	0.19	-0.3
2,574,574	-		EFB2_02434	0.19	+2.0
2,574,586	-		EFB2_02434	0.21	-2.0
2,574,632	+		EFB2_02434	0.26	+0.9
2,574,632	+		EFB2_02434	0.26	-0.9
2,574,633	-		EFB2_02434	0.26	-2.3
2,574,633	-		EFB2_02434	0.26	-0.5
2,574,633	-		EFB2_02434	0.26	+0.7
2,574,651	+		EFB2_02434	0.28	+1.6
2,574,651	+		EFB2_02434	0.28	+1.7
2,574,651	+		EFB2_02434	0.28	+0.3
2,574,651	+		EFB2_02434	0.28	+1.0
2,574,651	+		EFB2_02434	0.28	-0.5
2,574,651	+		EFB2_02434	0.28	+1.8
2,574,652	-		EFB2_02434	0.28	+0.5
2,574,652	-		EFB2_02434	0.28	-0.3
2,574,728	+		EFB2_02434	0.37	+0.5
2,574,728	+		EFB2_02434	0.37	+1.0
2,574,728	+		EFB2_02434	0.37	-1.4
2,574,728	+		EFB2_02434	0.37	-1.7
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