Strain Fitness in Escherichia fergusonii Becca around EFB2_02073

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
2,225,564	+		EFB2_02071	0.81	-1.4
2,225,564	+		EFB2_02071	0.81	+1.4
2,225,564	+		EFB2_02071	0.81	-0.4
2,225,565	-		EFB2_02071	0.81	-1.6
2,225,565	-		EFB2_02071	0.81	+1.4
2,225,565	-		EFB2_02071	0.81	-2.1
2,225,571	+		EFB2_02071	0.82	+0.3
2,225,571	+		EFB2_02071	0.82	-0.1
2,225,572	-		EFB2_02071	0.82	+3.7
2,225,572	-		EFB2_02071	0.82	+1.2
2,225,584	+		EFB2_02071	0.83	-1.1
2,225,585	-		EFB2_02071	0.83	+1.5
2,225,585	-		EFB2_02071	0.83	-0.5
2,225,630	+		EFB2_02071	0.88	+0.9
2,225,631	-		EFB2_02071	0.88	-1.3
2,225,663	+				+0.6
2,225,663	+				+1.6
2,225,664	-				-0.3
2,225,664	-				-0.9
2,225,664	-				+1.0
2,225,725	+				-1.5
2,225,726	-				-0.6
2,225,766	-				-0.6
2,225,766	-				-1.6
2,225,766	-				-2.9
2,225,788	+				-3.1
2,225,789	-				+1.0
2,225,789	-				+0.4
2,225,812	+				-0.1
2,225,813	-				+1.8
2,225,830	+		EFB2_02072	0.12	-1.4
2,225,830	+		EFB2_02072	0.12	-1.0
2,225,831	-		EFB2_02072	0.12	-0.8
2,225,920	-		EFB2_02072	0.24	+0.6
2,225,935	+		EFB2_02072	0.26	+0.7
2,226,136	+		EFB2_02072	0.53	+0.7
2,226,136	+		EFB2_02072	0.53	-2.2
2,226,137	-		EFB2_02072	0.53	-2.4
2,226,137	-		EFB2_02072	0.53	-1.3
2,226,156	-		EFB2_02072	0.55	+1.0
2,226,172	+		EFB2_02072	0.58	-0.4
2,226,172	+		EFB2_02072	0.58	-0.4
2,226,172	+		EFB2_02072	0.58	+1.2
2,226,172	+		EFB2_02072	0.58	-0.4
2,226,172	+		EFB2_02072	0.58	-1.8
2,226,173	-		EFB2_02072	0.58	+2.2
2,226,173	-		EFB2_02072	0.58	-2.1
2,226,174	+		EFB2_02072	0.58	+2.3
2,226,175	-		EFB2_02072	0.58	+0.2
2,226,175	-		EFB2_02072	0.58	-1.5
2,226,175	-		EFB2_02072	0.58	-0.4
2,226,184	+		EFB2_02072	0.59	+1.2
2,226,185	-		EFB2_02072	0.59	+0.4
2,226,185	-		EFB2_02072	0.59	-1.1
2,226,232	+		EFB2_02072	0.66	+0.4
2,226,232	+		EFB2_02072	0.66	+1.2
2,226,244	+		EFB2_02072	0.67	-1.2
2,226,244	+		EFB2_02072	0.67	-1.3
2,226,244	+		EFB2_02072	0.67	+1.0
2,226,244	+		EFB2_02072	0.67	-2.1
2,226,244	+		EFB2_02072	0.67	+0.6
2,226,244	+		EFB2_02072	0.67	-2.0
2,226,244	+		EFB2_02072	0.67	-1.5
2,226,244	+		EFB2_02072	0.67	-1.5
2,226,245	-		EFB2_02072	0.67	+1.1
2,226,245	-		EFB2_02072	0.67	+1.6
2,226,245	-		EFB2_02072	0.67	+0.5
2,226,245	-		EFB2_02072	0.67	-0.1
2,226,245	-		EFB2_02072	0.67	+2.8
2,226,245	-		EFB2_02072	0.67	+0.2
2,226,341	+		EFB2_02072	0.80	+0.4
2,226,346	+		EFB2_02072	0.81	-1.3
2,226,346	+		EFB2_02072	0.81	+2.6
2,226,346	+		EFB2_02072	0.81	+0.5
2,226,346	+		EFB2_02072	0.81	+0.2
2,226,346	+		EFB2_02072	0.81	+0.4
2,226,346	+		EFB2_02072	0.81	-1.1
2,226,346	+		EFB2_02072	0.81	+1.5
2,226,346	+		EFB2_02072	0.81	+0.2
2,226,346	+		EFB2_02072	0.81	-0.9
2,226,347	-		EFB2_02072	0.81	-0.5
2,226,347	-		EFB2_02072	0.81	-0.8
2,226,347	-		EFB2_02072	0.81	-0.4
2,226,347	-		EFB2_02072	0.81	-0.4
2,226,347	-		EFB2_02072	0.81	+0.8
2,226,347	-		EFB2_02072	0.81	-0.5
2,226,347	-		EFB2_02072	0.81	-1.0
2,226,347	-		EFB2_02072	0.81	+2.2
2,226,347	-		EFB2_02072	0.81	-1.3
2,226,347	-		EFB2_02072	0.81	-0.4
2,226,347	-		EFB2_02072	0.81	-1.6
2,226,347	-		EFB2_02072	0.81	+0.8
2,226,347	-		EFB2_02072	0.81	+0.2
2,226,347	-		EFB2_02072	0.81	+0.6
2,226,347	-		EFB2_02072	0.81	+0.0
2,226,347	-		EFB2_02072	0.81	-2.3
2,226,361	+		EFB2_02072	0.83	-1.4
2,226,361	+		EFB2_02072	0.83	-2.3
2,226,361	+		EFB2_02072	0.83	+2.0
2,226,361	+		EFB2_02072	0.83	-2.2
2,226,361	+		EFB2_02072	0.83	+1.9
2,226,361	+		EFB2_02072	0.83	-1.7
2,226,362	-		EFB2_02072	0.83	-2.3
2,226,362	-		EFB2_02072	0.83	+1.6
2,226,362	-		EFB2_02072	0.83	-0.6
2,226,362	-		EFB2_02072	0.83	+2.0
2,226,362	-		EFB2_02072	0.83	-0.1
2,226,362	-		EFB2_02072	0.83	+1.0
2,226,364	+		EFB2_02072	0.83	-1.3
2,226,372	+		EFB2_02072	0.84	+1.8
2,226,417	-				+0.7
2,226,417	-				-0.1
2,226,487	+				-1.1
2,226,487	+				-0.8
2,226,487	+				+0.2
2,226,487	+				+0.6
2,226,487	+				-0.1
2,226,487	+				-1.5
2,226,487	+				-0.8
2,226,487	+				+0.2
2,226,487	+				+2.0
2,226,488	-				+1.2
2,226,488	-				-2.7
2,226,488	-				+0.9
2,226,488	-				-1.7
2,226,488	-				-0.6
2,226,488	-				+0.2
2,226,488	-				+1.3
2,226,519	+				+0.4
2,226,519	+				+0.0
2,226,520	-				-0.7
2,226,520	-				-2.3
2,226,560	+				-2.8
2,226,560	+				+0.8
2,226,560	+				-1.1
2,226,560	+				-1.9
2,226,561	-				-1.8
2,226,561	-				+0.6
2,226,561	-				+1.1
2,226,561	-				-2.6
2,226,561	-				+0.9
2,226,561	-				-0.1
2,226,561	-				-1.4
2,226,561	-				+1.2
2,226,561	-				-1.3
2,226,561	-				+0.7
2,226,561	-				-0.1
2,226,561	-				+0.9
2,226,561	-				+0.2
2,226,561	-				+1.6
2,226,562	+				+0.8
2,226,562	+				+3.3
2,226,562	+				+1.4
2,226,562	+				+1.1
2,226,562	+				+1.0
2,226,562	+				+1.2
2,226,562	+				+0.1
2,226,562	+				+0.8
2,226,562	+				+0.8
2,226,562	+				-0.4
2,226,562	+				-0.6
2,226,562	+				+0.5
2,226,562	+				+0.4
2,226,562	+				-0.2
2,226,562	+				-2.5
2,226,562	+				+1.2
2,226,562	+				-1.5
2,226,562	+				-2.6
2,226,563	-				-0.1
2,226,563	-				-1.4
2,226,563	-				-1.8
2,226,563	-				-0.1
2,226,563	-				-0.0
2,226,563	-				+0.9
2,226,563	-				-2.7
2,226,563	-				+1.1
2,226,563	-				-0.8
2,226,563	-				-0.1
2,226,563	-				+1.7
2,226,563	-				+1.3
2,226,655	+		EFB2_02073	0.32	+0.6
2,226,655	+		EFB2_02073	0.32	+1.0
2,226,656	-		EFB2_02073	0.32	+1.8
2,226,658	+		EFB2_02073	0.33	-0.6
2,226,658	+		EFB2_02073	0.33	+2.2
2,226,659	-		EFB2_02073	0.33	-1.9
2,226,659	-		EFB2_02073	0.33	-0.8
2,226,698	+		EFB2_02073	0.43	+0.9
2,226,698	+		EFB2_02073	0.43	+2.5
2,226,698	+		EFB2_02073	0.43	-3.5
2,226,698	+		EFB2_02073	0.43	-1.5
2,226,698	+		EFB2_02073	0.43	+0.6
2,226,698	+		EFB2_02073	0.43	-0.8
2,226,698	+		EFB2_02073	0.43	-0.1
2,226,698	+		EFB2_02073	0.43	-0.4
2,226,699	-		EFB2_02073	0.43	+2.2
2,226,699	-		EFB2_02073	0.43	-1.1
2,226,699	-		EFB2_02073	0.43	+1.5
2,226,699	-		EFB2_02073	0.43	+0.1
2,226,699	-		EFB2_02073	0.43	-0.9
2,226,756	+		EFB2_02073	0.58	-2.8
2,226,756	+		EFB2_02073	0.58	+0.7
2,226,757	-		EFB2_02073	0.58	-1.8
2,226,758	+		EFB2_02073	0.58	+0.8
2,226,758	+		EFB2_02073	0.58	-0.8
2,226,758	+		EFB2_02073	0.58	-1.3
2,226,758	+		EFB2_02073	0.58	-0.6
2,226,758	+		EFB2_02073	0.58	-1.7
2,226,758	+		EFB2_02073	0.58	+0.6
2,226,759	-		EFB2_02073	0.58	-0.8
2,226,759	-		EFB2_02073	0.58	-2.4
2,226,759	-		EFB2_02073	0.58	-1.6
2,226,759	-		EFB2_02073	0.58	+1.2
2,226,759	-		EFB2_02073	0.58	-0.6
2,226,759	-		EFB2_02073	0.58	+0.6
2,226,764	+		EFB2_02073	0.60	+3.6
2,226,764	+		EFB2_02073	0.60	-1.0
2,226,764	+		EFB2_02073	0.60	-0.2
2,226,764	+		EFB2_02073	0.60	-1.5
2,226,764	+		EFB2_02073	0.60	-2.8
2,226,764	+		EFB2_02073	0.60	+0.7
2,226,764	+		EFB2_02073	0.60	+3.2
2,226,764	+		EFB2_02073	0.60	-0.1
2,226,764	+		EFB2_02073	0.60	-1.5
2,226,765	-		EFB2_02073	0.60	+0.2
2,226,765	-		EFB2_02073	0.60	-1.4
2,226,765	-		EFB2_02073	0.60	-0.1
2,226,765	-		EFB2_02073	0.60	-0.9
2,226,765	-		EFB2_02073	0.60	+0.7
2,226,765	-		EFB2_02073	0.60	-0.1
2,226,765	-		EFB2_02073	0.60	+1.2
2,226,765	-		EFB2_02073	0.60	-2.5
2,226,765	-		EFB2_02073	0.60	-0.8
2,226,765	-		EFB2_02073	0.60	+0.6
2,226,766	+		EFB2_02073	0.60	+0.3
2,226,766	+		EFB2_02073	0.60	-0.0
2,226,766	+		EFB2_02073	0.60	+0.2
2,226,766	+		EFB2_02073	0.60	+0.4
2,226,766	+		EFB2_02073	0.60	+0.4
2,226,767	-		EFB2_02073	0.60	+0.3
2,226,767	-		EFB2_02073	0.60	+0.4
2,226,767	-		EFB2_02073	0.60	-1.3
2,226,767	-		EFB2_02073	0.60	-0.4
2,226,767	-		EFB2_02073	0.60	-0.9
2,226,794	+		EFB2_02073	0.67	+1.3
2,226,842	-		EFB2_02073	0.79	+0.3
2,226,877	+		EFB2_02073	0.88	-1.7
2,226,885	+				-0.0
2,226,886	-				-0.8
2,226,897	+				-1.4
2,226,898	-				+1.6
2,226,898	-				-1.1
2,226,907	+				-2.5
2,226,908	-				-2.5
2,226,918	+				-1.5
2,226,918	+				-0.4
2,226,918	+				-1.1
2,226,919	-				+4.3
2,226,919	-				-0.1
2,226,919	-				+1.2
2,226,919	-				-0.3
2,226,919	-				-1.9
2,226,923	+				+2.8
2,226,923	+				-1.9
2,226,923	+				-1.1
2,226,923	+				-2.3
2,226,923	+				-0.6
2,226,924	-				-2.7
2,226,924	-				-0.8
2,226,959	+				-2.4
2,226,959	+				-0.8
2,226,959	+				+0.1
2,226,959	+				-1.7
2,226,959	+				+2.3
2,226,959	+				+0.2
2,226,959	+				-1.1
2,226,959	+				-1.5
2,226,960	-				-1.3
2,226,960	-				-2.3
2,226,960	-				+0.2
2,226,960	-				-1.0
2,226,960	-				+1.7
2,226,960	-				-0.7
2,226,964	+				+1.2
2,226,964	+				+0.4
2,226,964	+				+0.3
2,226,964	+				+0.7
2,226,964	+				+1.4
2,226,964	+				+1.5
2,226,964	+				-0.2
2,226,964	+				-2.1
2,226,964	+				+1.7
2,226,964	+				-1.6
2,226,964	+				+1.8
2,226,964	+				+0.9
2,226,964	+				-1.3
2,226,965	-				+0.6
2,226,965	-				-1.6
2,226,965	-				-2.8
2,226,965	-				-0.6
2,226,965	-				-2.9
2,226,965	-				-1.3
2,226,965	-				+2.4
2,226,965	-				-0.3
2,226,965	-				-2.5
2,226,965	-				-1.0
2,226,965	-				-0.1
2,226,965	-				+0.7
2,226,965	-				+0.2
2,226,965	-				+0.8
2,226,965	-				-1.3
2,226,965	-				-3.4
2,226,965	-				-2.6
2,226,965	-				+0.6
2,226,965	-				-0.4
2,226,965	-				+0.6
2,226,965	-				+1.7
2,227,003	-				-0.5
2,227,035	+				-1.0
2,227,035	+				-1.7
2,227,036	-				-2.3
2,227,036	-				-2.4
2,227,039	+				-2.6
2,227,039	+				-3.6
2,227,039	+				+0.6
2,227,039	+				+1.1
2,227,039	+				-1.1
2,227,040	-				+2.8
2,227,040	-				-1.3
2,227,040	-				-0.1
2,227,040	-				+0.3
2,227,040	-				-1.9
2,227,056	+				-1.6
2,227,056	+				-2.7
2,227,056	+				-0.6
2,227,056	+				-0.7
2,227,056	+				-1.3
2,227,056	+				+1.1
2,227,056	+				-2.7
2,227,056	+				-1.3
2,227,056	+				-0.2
2,227,056	+				-0.2
2,227,056	+				-1.5
2,227,056	+				+1.9
2,227,056	+				-1.2
2,227,056	+				+0.3
2,227,056	+				+2.7
2,227,056	+				+0.8
2,227,056	+				-0.2
2,227,056	+				-0.9
2,227,056	+				-3.6
2,227,056	+				+0.9
2,227,056	+				-1.0
2,227,056	+				+1.3
2,227,056	+				+0.9
2,227,057	-				+0.1
2,227,057	-				-3.1
2,227,057	-				+0.4
2,227,057	-				+2.5
2,227,057	-				+1.3
2,227,057	-				-2.0
2,227,057	-				+1.5
2,227,057	-				-1.2
2,227,057	-				+2.0
2,227,057	-				+2.4
2,227,057	-				+1.2
2,227,057	-				-1.0
2,227,057	-				+1.5
2,227,057	-				+0.9
2,227,057	-				-3.1
2,227,057	-				+0.6
2,227,057	-				+0.6
2,227,057	-				+0.3
2,227,057	-				-2.2
2,227,057	-				-0.4
2,227,060	+		EFB2_02074	0.10	-0.6
2,227,060	+		EFB2_02074	0.10	+1.6
2,227,060	+		EFB2_02074	0.10	-0.9
2,227,060	+		EFB2_02074	0.10	+0.4
2,227,060	+		EFB2_02074	0.10	+0.1
2,227,060	+		EFB2_02074	0.10	-0.2
2,227,060	+		EFB2_02074	0.10	+1.2
2,227,060	+		EFB2_02074	0.10	-2.8
2,227,061	-		EFB2_02074	0.10	+0.4
2,227,061	-		EFB2_02074	0.10	+0.1
2,227,061	-		EFB2_02074	0.10	+3.9
2,227,061	-		EFB2_02074	0.10	-2.4
2,227,061	-		EFB2_02074	0.10	+0.6
2,227,061	-		EFB2_02074	0.10	+1.5
2,227,061	-		EFB2_02074	0.10	+0.9
2,227,061	-		EFB2_02074	0.10	-1.4
2,227,061	-		EFB2_02074	0.10	-1.8
2,227,061	-		EFB2_02074	0.10	+0.6
2,227,061	-		EFB2_02074	0.10	-0.6
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