Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_04399

Experiment: iri MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_04397 and OHPLBJKB_04398 are separated by 8 nucleotidesOHPLBJKB_04398 and OHPLBJKB_04399 overlap by 4 nucleotidesOHPLBJKB_04399 and OHPLBJKB_04400 overlap by 4 nucleotidesOHPLBJKB_04400 and OHPLBJKB_04401 overlap by 4 nucleotides OHPLBJKB_04397: OHPLBJKB_04397 - hypothetical protein, at 55,092 to 55,730 _04397 OHPLBJKB_04398: OHPLBJKB_04398 - hypothetical protein, at 55,739 to 56,731 _04398 OHPLBJKB_04399: OHPLBJKB_04399 - hypothetical protein, at 56,728 to 57,360 _04399 OHPLBJKB_04400: OHPLBJKB_04400 - hypothetical protein, at 57,357 to 57,743 _04400 OHPLBJKB_04401: OHPLBJKB_04401 - Protein TraC, at 57,740 to 60,367 _04401 Position (kb) 56 57 58Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6 7at 55.756 kb on + strandat 55.757 kb on - strandat 55.757 kb on - strandat 55.869 kb on + strand, within OHPLBJKB_04398at 55.873 kb on + strand, within OHPLBJKB_04398at 55.873 kb on + strand, within OHPLBJKB_04398at 55.873 kb on + strand, within OHPLBJKB_04398at 55.874 kb on - strand, within OHPLBJKB_04398at 55.874 kb on - strand, within OHPLBJKB_04398at 55.874 kb on - strand, within OHPLBJKB_04398at 55.942 kb on + strand, within OHPLBJKB_04398at 55.963 kb on + strand, within OHPLBJKB_04398at 56.042 kb on - strand, within OHPLBJKB_04398at 56.064 kb on + strand, within OHPLBJKB_04398at 56.068 kb on + strand, within OHPLBJKB_04398at 56.068 kb on + strand, within OHPLBJKB_04398at 56.068 kb on + strand, within OHPLBJKB_04398at 56.068 kb on + strand, within OHPLBJKB_04398at 56.068 kb on + strand, within OHPLBJKB_04398at 56.068 kb on + strand, within OHPLBJKB_04398at 56.068 kb on + strand, within OHPLBJKB_04398at 56.068 kb on + strand, within OHPLBJKB_04398at 56.068 kb on + strand, within OHPLBJKB_04398at 56.068 kb on + strand, within OHPLBJKB_04398at 56.068 kb on + strand, within OHPLBJKB_04398at 56.068 kb on + strand, within OHPLBJKB_04398at 56.068 kb on + strand, within OHPLBJKB_04398at 56.068 kb on + strand, within OHPLBJKB_04398at 56.068 kb on + strand, within OHPLBJKB_04398at 56.068 kb on + strand, within OHPLBJKB_04398at 56.068 kb on + strand, within OHPLBJKB_04398at 56.068 kb on + strand, within OHPLBJKB_04398at 56.069 kb on - strand, within OHPLBJKB_04398at 56.069 kb on - strand, within OHPLBJKB_04398at 56.069 kb on - strand, within OHPLBJKB_04398at 56.069 kb on - strand, within OHPLBJKB_04398at 56.069 kb on - strand, within OHPLBJKB_04398at 56.069 kb on - strand, within OHPLBJKB_04398at 56.069 kb on - strand, within OHPLBJKB_04398at 56.069 kb on - strand, within OHPLBJKB_04398at 56.069 kb on - strand, within OHPLBJKB_04398at 56.069 kb on - strand, within OHPLBJKB_04398at 56.114 kb on - strand, within OHPLBJKB_04398at 56.116 kb on + strand, within OHPLBJKB_04398at 56.116 kb on + strand, within OHPLBJKB_04398at 56.244 kb on + strand, within OHPLBJKB_04398at 56.244 kb on + strand, within OHPLBJKB_04398at 56.244 kb on + strand, within OHPLBJKB_04398at 56.304 kb on + strand, within OHPLBJKB_04398at 56.304 kb on + strand, within OHPLBJKB_04398at 56.338 kb on - strand, within OHPLBJKB_04398at 56.338 kb on - strand, within OHPLBJKB_04398at 56.351 kb on + strand, within OHPLBJKB_04398at 56.352 kb on - strand, within OHPLBJKB_04398at 56.352 kb on - strand, within OHPLBJKB_04398at 56.609 kb on - strand, within OHPLBJKB_04398at 56.755 kb on - strandat 56.855 kb on + strand, within OHPLBJKB_04399at 56.855 kb on + strand, within OHPLBJKB_04399at 56.855 kb on + strand, within OHPLBJKB_04399at 57.011 kb on + strand, within OHPLBJKB_04399at 57.012 kb on - strand, within OHPLBJKB_04399at 57.012 kb on - strand, within OHPLBJKB_04399at 57.012 kb on - strand, within OHPLBJKB_04399at 57.183 kb on + strand, within OHPLBJKB_04399at 57.503 kb on + strand, within OHPLBJKB_04400at 57.504 kb on - strand, within OHPLBJKB_04400at 57.903 kb on + strandat 57.903 kb on + strandat 57.903 kb on + strandat 57.903 kb on + strandat 57.904 kb on - strandat 57.904 kb on - strandat 57.904 kb on - strandat 57.904 kb on - strandat 57.904 kb on - strandat 57.904 kb on - strandat 58.009 kb on + strand, within OHPLBJKB_04401at 58.050 kb on + strand, within OHPLBJKB_04401at 58.062 kb on + strand, within OHPLBJKB_04401at 58.062 kb on + strand, within OHPLBJKB_04401at 58.187 kb on - strand, within OHPLBJKB_04401at 58.188 kb on + strand, within OHPLBJKB_04401at 58.188 kb on + strand, within OHPLBJKB_04401at 58.188 kb on + strand, within OHPLBJKB_04401at 58.188 kb on + strand, within OHPLBJKB_04401at 58.188 kb on + strand, within OHPLBJKB_04401at 58.188 kb on + strand, within OHPLBJKB_04401at 58.188 kb on + strand, within OHPLBJKB_04401at 58.189 kb on - strand, within OHPLBJKB_04401at 58.189 kb on - strand, within OHPLBJKB_04401at 58.189 kb on - strand, within OHPLBJKB_04401at 58.189 kb on - strand, within OHPLBJKB_04401at 58.338 kb on + strand, within OHPLBJKB_04401at 58.339 kb on - strand, within OHPLBJKB_04401at 58.339 kb on - strand, within OHPLBJKB_04401at 58.339 kb on - strand, within OHPLBJKB_04401at 58.339 kb on - strand, within OHPLBJKB_04401at 58.339 kb on - strand, within OHPLBJKB_04401at 58.339 kb on - strand, within OHPLBJKB_04401at 58.339 kb on - strand, within OHPLBJKB_04401at 58.342 kb on + strand, within OHPLBJKB_04401

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Per-strain Table

Position Strand Gene LocusTag Fraction iri MOI10
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55,756 + +4.7
55,757 - +2.9
55,757 - +4.0
55,869 + OHPLBJKB_04398 0.13 +5.1
55,873 + OHPLBJKB_04398 0.13 +5.9
55,873 + OHPLBJKB_04398 0.13 +5.8
55,873 + OHPLBJKB_04398 0.13 +4.8
55,874 - OHPLBJKB_04398 0.14 +5.7
55,874 - OHPLBJKB_04398 0.14 +2.9
55,874 - OHPLBJKB_04398 0.14 +4.6
55,942 + OHPLBJKB_04398 0.20 +5.8
55,963 + OHPLBJKB_04398 0.23 +6.9
56,042 - OHPLBJKB_04398 0.31 +3.6
56,064 + OHPLBJKB_04398 0.33 +4.7
56,068 + OHPLBJKB_04398 0.33 +5.5
56,068 + OHPLBJKB_04398 0.33 +3.9
56,068 + OHPLBJKB_04398 0.33 +5.5
56,068 + OHPLBJKB_04398 0.33 +5.8
56,068 + OHPLBJKB_04398 0.33 +5.8
56,068 + OHPLBJKB_04398 0.33 +6.3
56,068 + OHPLBJKB_04398 0.33 +5.0
56,068 + OHPLBJKB_04398 0.33 +5.5
56,068 + OHPLBJKB_04398 0.33 +0.4
56,068 + OHPLBJKB_04398 0.33 +4.7
56,068 + OHPLBJKB_04398 0.33 +6.1
56,068 + OHPLBJKB_04398 0.33 +5.3
56,068 + OHPLBJKB_04398 0.33 +4.8
56,068 + OHPLBJKB_04398 0.33 +5.4
56,068 + OHPLBJKB_04398 0.33 +5.1
56,068 + OHPLBJKB_04398 0.33 +4.3
56,068 + OHPLBJKB_04398 0.33 +4.2
56,068 + OHPLBJKB_04398 0.33 +5.0
56,069 - OHPLBJKB_04398 0.33 +4.6
56,069 - OHPLBJKB_04398 0.33 +4.7
56,069 - OHPLBJKB_04398 0.33 +4.7
56,069 - OHPLBJKB_04398 0.33 +4.1
56,069 - OHPLBJKB_04398 0.33 +4.3
56,069 - OHPLBJKB_04398 0.33 +4.4
56,069 - OHPLBJKB_04398 0.33 +3.9
56,069 - OHPLBJKB_04398 0.33 +4.6
56,069 - OHPLBJKB_04398 0.33 +4.5
56,069 - OHPLBJKB_04398 0.33 +3.4
56,114 - OHPLBJKB_04398 0.38 +4.2
56,116 + OHPLBJKB_04398 0.38 +6.1
56,116 + OHPLBJKB_04398 0.38 +5.9
56,244 + OHPLBJKB_04398 0.51 +5.2
56,244 + OHPLBJKB_04398 0.51 +4.3
56,244 + OHPLBJKB_04398 0.51 +4.7
56,304 + OHPLBJKB_04398 0.57 +5.3
56,304 + OHPLBJKB_04398 0.57 +5.0
56,338 - OHPLBJKB_04398 0.60 +3.3
56,338 - OHPLBJKB_04398 0.60 +4.4
56,351 + OHPLBJKB_04398 0.62 +5.1
56,352 - OHPLBJKB_04398 0.62 +4.8
56,352 - OHPLBJKB_04398 0.62 +4.6
56,609 - OHPLBJKB_04398 0.88 +3.2
56,755 - +4.1
56,855 + OHPLBJKB_04399 0.20 +5.6
56,855 + OHPLBJKB_04399 0.20 +5.5
56,855 + OHPLBJKB_04399 0.20 +5.9
57,011 + OHPLBJKB_04399 0.45 +4.2
57,012 - OHPLBJKB_04399 0.45 +3.4
57,012 - OHPLBJKB_04399 0.45 +4.4
57,012 - OHPLBJKB_04399 0.45 +3.8
57,183 + OHPLBJKB_04399 0.72 +5.0
57,503 + OHPLBJKB_04400 0.38 +5.3
57,504 - OHPLBJKB_04400 0.38 +0.9
57,903 + +5.4
57,903 + +4.8
57,903 + +5.8
57,903 + +7.0
57,904 - +5.1
57,904 - +5.6
57,904 - +5.9
57,904 - +5.5
57,904 - +5.6
57,904 - +5.3
58,009 + OHPLBJKB_04401 0.10 +5.4
58,050 + OHPLBJKB_04401 0.12 +5.9
58,062 + OHPLBJKB_04401 0.12 +5.4
58,062 + OHPLBJKB_04401 0.12 +6.0
58,187 - OHPLBJKB_04401 0.17 +6.0
58,188 + OHPLBJKB_04401 0.17 +5.3
58,188 + OHPLBJKB_04401 0.17 +6.0
58,188 + OHPLBJKB_04401 0.17 +6.1
58,188 + OHPLBJKB_04401 0.17 +5.6
58,188 + OHPLBJKB_04401 0.17 +4.8
58,188 + OHPLBJKB_04401 0.17 +5.2
58,188 + OHPLBJKB_04401 0.17 +5.2
58,189 - OHPLBJKB_04401 0.17 +5.3
58,189 - OHPLBJKB_04401 0.17 +4.6
58,189 - OHPLBJKB_04401 0.17 +6.4
58,189 - OHPLBJKB_04401 0.17 +3.8
58,338 + OHPLBJKB_04401 0.23 +5.5
58,339 - OHPLBJKB_04401 0.23 +6.0
58,339 - OHPLBJKB_04401 0.23 +5.0
58,339 - OHPLBJKB_04401 0.23 +5.7
58,339 - OHPLBJKB_04401 0.23 +5.7
58,339 - OHPLBJKB_04401 0.23 +4.8
58,339 - OHPLBJKB_04401 0.23 +5.5
58,339 - OHPLBJKB_04401 0.23 +5.8
58,342 + OHPLBJKB_04401 0.23 +5.1

Or see this region's nucleotide sequence