Experiment: iri MOI10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_04355 and OHPLBJKB_04356 are separated by 226 nucleotides OHPLBJKB_04356 and OHPLBJKB_04357 are separated by 139 nucleotides OHPLBJKB_04357 and OHPLBJKB_04358 are separated by 85 nucleotides OHPLBJKB_04358 and OHPLBJKB_04359 are separated by 433 nucleotides
OHPLBJKB_04355: OHPLBJKB_04355 - hypothetical protein, at 6,020 to 10,135
_04355
OHPLBJKB_04356: OHPLBJKB_04356 - hypothetical protein, at 10,362 to 10,631
_04356
OHPLBJKB_04357: OHPLBJKB_04357 - hypothetical protein, at 10,771 to 16,080
_04357
OHPLBJKB_04358: OHPLBJKB_04358 - hypothetical protein, at 16,166 to 16,399
_04358
OHPLBJKB_04359: OHPLBJKB_04359 - hypothetical protein, at 16,833 to 17,525
_04359
Position (kb) 10
11
12
13
14
15
16
17 Strain fitness (log2 ratio) -2
-1
0
1 at 9.788 kb on + strand at 9.796 kb on + strand at 9.796 kb on + strand at 9.808 kb on + strand at 9.865 kb on + strand at 9.937 kb on + strand at 9.938 kb on - strand at 10.167 kb on - strand at 10.220 kb on + strand at 10.436 kb on - strand, within OHPLBJKB_04356 at 10.559 kb on + strand, within OHPLBJKB_04356 at 10.677 kb on + strand at 10.677 kb on + strand at 10.704 kb on + strand at 10.801 kb on - strand at 11.119 kb on - strand at 11.225 kb on + strand at 11.370 kb on - strand, within OHPLBJKB_04357 at 11.475 kb on + strand, within OHPLBJKB_04357 at 11.637 kb on - strand, within OHPLBJKB_04357 at 11.730 kb on + strand, within OHPLBJKB_04357 at 11.996 kb on - strand, within OHPLBJKB_04357 at 12.011 kb on + strand, within OHPLBJKB_04357 at 12.015 kb on + strand, within OHPLBJKB_04357 at 12.052 kb on - strand, within OHPLBJKB_04357 at 12.276 kb on + strand, within OHPLBJKB_04357 at 12.345 kb on + strand, within OHPLBJKB_04357 at 12.346 kb on - strand, within OHPLBJKB_04357 at 12.402 kb on + strand, within OHPLBJKB_04357 at 12.423 kb on + strand, within OHPLBJKB_04357 at 12.423 kb on + strand, within OHPLBJKB_04357 at 12.423 kb on + strand, within OHPLBJKB_04357 at 12.424 kb on - strand, within OHPLBJKB_04357 at 12.648 kb on + strand, within OHPLBJKB_04357 at 13.259 kb on + strand, within OHPLBJKB_04357 at 13.294 kb on - strand, within OHPLBJKB_04357 at 13.294 kb on - strand, within OHPLBJKB_04357 at 13.294 kb on - strand, within OHPLBJKB_04357 at 13.596 kb on - strand, within OHPLBJKB_04357 at 13.644 kb on + strand, within OHPLBJKB_04357 at 13.737 kb on + strand, within OHPLBJKB_04357 at 13.762 kb on - strand, within OHPLBJKB_04357 at 13.890 kb on + strand, within OHPLBJKB_04357 at 13.931 kb on - strand, within OHPLBJKB_04357 at 13.967 kb on + strand, within OHPLBJKB_04357 at 14.151 kb on + strand, within OHPLBJKB_04357 at 14.331 kb on + strand, within OHPLBJKB_04357 at 14.392 kb on - strand, within OHPLBJKB_04357 at 14.420 kb on + strand, within OHPLBJKB_04357 at 14.478 kb on + strand, within OHPLBJKB_04357 at 14.479 kb on - strand, within OHPLBJKB_04357 at 14.535 kb on - strand, within OHPLBJKB_04357 at 14.535 kb on - strand, within OHPLBJKB_04357 at 14.646 kb on + strand, within OHPLBJKB_04357 at 14.701 kb on - strand, within OHPLBJKB_04357 at 14.765 kb on - strand, within OHPLBJKB_04357 at 14.779 kb on + strand, within OHPLBJKB_04357 at 14.804 kb on + strand, within OHPLBJKB_04357 at 14.859 kb on + strand, within OHPLBJKB_04357 at 14.860 kb on - strand, within OHPLBJKB_04357 at 14.860 kb on - strand, within OHPLBJKB_04357 at 14.879 kb on + strand, within OHPLBJKB_04357 at 15.001 kb on + strand, within OHPLBJKB_04357 at 15.003 kb on + strand, within OHPLBJKB_04357 at 15.087 kb on + strand, within OHPLBJKB_04357 at 15.129 kb on + strand, within OHPLBJKB_04357 at 15.134 kb on + strand, within OHPLBJKB_04357 at 15.187 kb on - strand, within OHPLBJKB_04357 at 15.518 kb on - strand, within OHPLBJKB_04357 at 15.636 kb on - strand at 15.942 kb on + strand at 15.942 kb on + strand at 16.135 kb on + strand at 16.135 kb on + strand at 16.196 kb on + strand, within OHPLBJKB_04358 at 16.460 kb on - strand at 16.818 kb on + strand at 16.845 kb on - strand at 16.845 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction iri MOI10 remove 9,788 + +1.2 9,796 + -0.2 9,796 + +0.1 9,808 + -1.0 9,865 + -0.0 9,937 + +0.6 9,938 - -0.6 10,167 - -0.3 10,220 + +1.0 10,436 - OHPLBJKB_04356 0.27 -0.0 10,559 + OHPLBJKB_04356 0.73 -0.0 10,677 + +0.7 10,677 + -0.3 10,704 + -0.3 10,801 - +1.3 11,119 - +1.0 11,225 + -1.0 11,370 - OHPLBJKB_04357 0.11 -0.4 11,475 + OHPLBJKB_04357 0.13 +0.2 11,637 - OHPLBJKB_04357 0.16 -1.0 11,730 + OHPLBJKB_04357 0.18 -0.3 11,996 - OHPLBJKB_04357 0.23 -1.1 12,011 + OHPLBJKB_04357 0.23 -0.6 12,015 + OHPLBJKB_04357 0.23 +0.4 12,052 - OHPLBJKB_04357 0.24 +0.6 12,276 + OHPLBJKB_04357 0.28 +0.1 12,345 + OHPLBJKB_04357 0.30 +0.8 12,346 - OHPLBJKB_04357 0.30 -0.5 12,402 + OHPLBJKB_04357 0.31 +0.2 12,423 + OHPLBJKB_04357 0.31 +0.3 12,423 + OHPLBJKB_04357 0.31 -1.3 12,423 + OHPLBJKB_04357 0.31 -0.6 12,424 - OHPLBJKB_04357 0.31 +1.0 12,648 + OHPLBJKB_04357 0.35 +0.4 13,259 + OHPLBJKB_04357 0.47 -1.0 13,294 - OHPLBJKB_04357 0.48 -0.0 13,294 - OHPLBJKB_04357 0.48 +1.1 13,294 - OHPLBJKB_04357 0.48 +0.5 13,596 - OHPLBJKB_04357 0.53 -0.8 13,644 + OHPLBJKB_04357 0.54 -0.2 13,737 + OHPLBJKB_04357 0.56 +0.4 13,762 - OHPLBJKB_04357 0.56 -0.6 13,890 + OHPLBJKB_04357 0.59 -0.7 13,931 - OHPLBJKB_04357 0.60 +0.2 13,967 + OHPLBJKB_04357 0.60 +0.6 14,151 + OHPLBJKB_04357 0.64 -1.3 14,331 + OHPLBJKB_04357 0.67 +1.0 14,392 - OHPLBJKB_04357 0.68 -0.3 14,420 + OHPLBJKB_04357 0.69 -0.3 14,478 + OHPLBJKB_04357 0.70 -2.2 14,479 - OHPLBJKB_04357 0.70 -1.3 14,535 - OHPLBJKB_04357 0.71 -0.6 14,535 - OHPLBJKB_04357 0.71 +0.8 14,646 + OHPLBJKB_04357 0.73 +0.2 14,701 - OHPLBJKB_04357 0.74 +0.9 14,765 - OHPLBJKB_04357 0.75 +1.0 14,779 + OHPLBJKB_04357 0.75 -1.3 14,804 + OHPLBJKB_04357 0.76 +0.2 14,859 + OHPLBJKB_04357 0.77 -1.5 14,860 - OHPLBJKB_04357 0.77 -0.0 14,860 - OHPLBJKB_04357 0.77 +1.4 14,879 + OHPLBJKB_04357 0.77 -0.2 15,001 + OHPLBJKB_04357 0.80 +0.1 15,003 + OHPLBJKB_04357 0.80 +0.4 15,087 + OHPLBJKB_04357 0.81 -0.0 15,129 + OHPLBJKB_04357 0.82 -0.2 15,134 + OHPLBJKB_04357 0.82 +0.4 15,187 - OHPLBJKB_04357 0.83 -1.2 15,518 - OHPLBJKB_04357 0.89 +0.7 15,636 - +0.3 15,942 + -0.3 15,942 + -1.0 16,135 + -0.5 16,135 + +1.5 16,196 + OHPLBJKB_04358 0.13 -0.2 16,460 - -1.6 16,818 + -0.6 16,845 - -0.8 16,845 - +1.0
Or see this region's nucleotide sequence