Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00790

Experiment: iri MOI10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntOHPLBJKB_00789 and OHPLBJKB_00790 are separated by 49 nucleotidesOHPLBJKB_00790 and OHPLBJKB_00791 are separated by 214 nucleotides OHPLBJKB_00789: OHPLBJKB_00789 - D-erythrose-4-phosphate dehydrogenase, at 809,699 to 810,718 _00789 OHPLBJKB_00790: OHPLBJKB_00790 - Phosphoglycerate kinase, at 810,768 to 811,931 _00790 OHPLBJKB_00791: OHPLBJKB_00791 - Fructose-bisphosphate aldolase class 2, at 812,146 to 813,225 _00791 Position (kb) 810 811 812Strain fitness (log2 ratio) -2 -1 0 1at 809.789 kb on - strandat 809.846 kb on + strand, within OHPLBJKB_00789at 809.847 kb on - strand, within OHPLBJKB_00789at 809.847 kb on - strand, within OHPLBJKB_00789at 809.880 kb on + strand, within OHPLBJKB_00789at 809.929 kb on - strand, within OHPLBJKB_00789at 809.982 kb on + strand, within OHPLBJKB_00789at 809.983 kb on - strand, within OHPLBJKB_00789at 809.983 kb on - strand, within OHPLBJKB_00789at 809.983 kb on - strand, within OHPLBJKB_00789at 810.003 kb on + strand, within OHPLBJKB_00789at 810.003 kb on + strand, within OHPLBJKB_00789at 810.003 kb on + strand, within OHPLBJKB_00789at 810.003 kb on + strand, within OHPLBJKB_00789at 810.004 kb on - strand, within OHPLBJKB_00789at 810.004 kb on - strand, within OHPLBJKB_00789at 810.004 kb on - strand, within OHPLBJKB_00789at 810.151 kb on + strand, within OHPLBJKB_00789at 810.177 kb on + strand, within OHPLBJKB_00789at 810.198 kb on + strand, within OHPLBJKB_00789at 810.278 kb on + strand, within OHPLBJKB_00789at 810.279 kb on - strand, within OHPLBJKB_00789at 810.337 kb on + strand, within OHPLBJKB_00789at 810.338 kb on - strand, within OHPLBJKB_00789at 810.417 kb on + strand, within OHPLBJKB_00789at 810.417 kb on + strand, within OHPLBJKB_00789at 810.463 kb on - strand, within OHPLBJKB_00789at 810.520 kb on + strand, within OHPLBJKB_00789at 810.520 kb on + strand, within OHPLBJKB_00789at 810.522 kb on + strand, within OHPLBJKB_00789at 810.522 kb on + strand, within OHPLBJKB_00789at 810.555 kb on + strand, within OHPLBJKB_00789at 810.690 kb on + strandat 810.690 kb on + strandat 810.694 kb on + strandat 810.694 kb on + strandat 810.700 kb on + strandat 811.883 kb on + strandat 811.883 kb on + strandat 811.883 kb on + strandat 811.888 kb on + strandat 811.888 kb on + strandat 811.900 kb on + strandat 812.116 kb on + strandat 812.116 kb on + strandat 812.116 kb on + strandat 812.116 kb on + strandat 812.118 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction iri MOI10
remove
809,789 - -0.4
809,846 + OHPLBJKB_00789 0.14 -0.2
809,847 - OHPLBJKB_00789 0.15 +1.0
809,847 - OHPLBJKB_00789 0.15 -0.4
809,880 + OHPLBJKB_00789 0.18 +0.8
809,929 - OHPLBJKB_00789 0.23 +0.2
809,982 + OHPLBJKB_00789 0.28 -1.1
809,983 - OHPLBJKB_00789 0.28 +1.4
809,983 - OHPLBJKB_00789 0.28 -0.1
809,983 - OHPLBJKB_00789 0.28 +0.2
810,003 + OHPLBJKB_00789 0.30 +0.3
810,003 + OHPLBJKB_00789 0.30 -0.6
810,003 + OHPLBJKB_00789 0.30 +0.0
810,003 + OHPLBJKB_00789 0.30 -0.4
810,004 - OHPLBJKB_00789 0.30 -0.6
810,004 - OHPLBJKB_00789 0.30 -2.0
810,004 - OHPLBJKB_00789 0.30 +0.3
810,151 + OHPLBJKB_00789 0.44 -0.7
810,177 + OHPLBJKB_00789 0.47 -1.0
810,198 + OHPLBJKB_00789 0.49 +0.3
810,278 + OHPLBJKB_00789 0.57 -0.9
810,279 - OHPLBJKB_00789 0.57 -0.4
810,337 + OHPLBJKB_00789 0.63 -0.3
810,338 - OHPLBJKB_00789 0.63 -0.6
810,417 + OHPLBJKB_00789 0.70 +0.1
810,417 + OHPLBJKB_00789 0.70 -0.1
810,463 - OHPLBJKB_00789 0.75 -0.2
810,520 + OHPLBJKB_00789 0.80 -1.3
810,520 + OHPLBJKB_00789 0.80 -0.2
810,522 + OHPLBJKB_00789 0.81 +0.2
810,522 + OHPLBJKB_00789 0.81 +0.2
810,555 + OHPLBJKB_00789 0.84 +0.1
810,690 + -1.2
810,690 + -0.6
810,694 + -0.6
810,694 + +0.1
810,700 + +0.3
811,883 + +1.0
811,883 + -0.3
811,883 + -1.3
811,888 + -0.2
811,888 + -1.1
811,900 + +0.4
812,116 + +0.5
812,116 + +0.1
812,116 + -0.5
812,116 + -0.7
812,118 + -0.6

Or see this region's nucleotide sequence