Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_00719

Experiment: iri MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_00717 and OHPLBJKB_00718 are separated by 11 nucleotidesOHPLBJKB_00718 and OHPLBJKB_00719 are separated by 30 nucleotidesOHPLBJKB_00719 and OHPLBJKB_00720 overlap by 4 nucleotides OHPLBJKB_00717: OHPLBJKB_00717 - hypothetical protein, at 735,012 to 735,836 _00717 OHPLBJKB_00718: OHPLBJKB_00718 - putative protein YtfJ, at 735,848 to 736,408 _00718 OHPLBJKB_00719: OHPLBJKB_00719 - hypothetical protein, at 736,439 to 737,509 _00719 OHPLBJKB_00720: OHPLBJKB_00720 - Lipopolysaccharide export system permease protein LptG, at 737,506 to 738,585 _00720 Position (kb) 736 737 738Strain fitness (log2 ratio) -2 -1 0 1at 735.439 kb on - strand, within OHPLBJKB_00717at 735.443 kb on - strand, within OHPLBJKB_00717at 735.471 kb on + strand, within OHPLBJKB_00717at 735.472 kb on - strand, within OHPLBJKB_00717at 735.472 kb on - strand, within OHPLBJKB_00717at 735.502 kb on + strand, within OHPLBJKB_00717at 735.503 kb on - strand, within OHPLBJKB_00717at 735.553 kb on + strand, within OHPLBJKB_00717at 735.572 kb on - strand, within OHPLBJKB_00717at 735.633 kb on - strand, within OHPLBJKB_00717at 735.638 kb on - strand, within OHPLBJKB_00717at 735.638 kb on - strand, within OHPLBJKB_00717at 735.659 kb on + strand, within OHPLBJKB_00717at 735.762 kb on + strandat 735.762 kb on + strandat 735.762 kb on + strandat 735.762 kb on + strandat 735.763 kb on - strandat 735.806 kb on - strandat 735.833 kb on - strandat 735.878 kb on - strandat 735.944 kb on + strand, within OHPLBJKB_00718at 735.945 kb on - strand, within OHPLBJKB_00718at 735.945 kb on - strand, within OHPLBJKB_00718at 735.945 kb on - strand, within OHPLBJKB_00718at 735.945 kb on - strand, within OHPLBJKB_00718at 735.945 kb on - strand, within OHPLBJKB_00718at 735.946 kb on + strand, within OHPLBJKB_00718at 735.947 kb on - strand, within OHPLBJKB_00718at 736.060 kb on + strand, within OHPLBJKB_00718at 736.093 kb on + strand, within OHPLBJKB_00718at 736.094 kb on - strand, within OHPLBJKB_00718at 736.094 kb on - strand, within OHPLBJKB_00718at 736.094 kb on - strand, within OHPLBJKB_00718at 736.181 kb on + strand, within OHPLBJKB_00718at 736.181 kb on + strand, within OHPLBJKB_00718at 736.181 kb on + strand, within OHPLBJKB_00718at 736.182 kb on - strand, within OHPLBJKB_00718at 736.182 kb on - strand, within OHPLBJKB_00718at 736.365 kb on + strandat 736.365 kb on + strandat 736.365 kb on + strandat 736.366 kb on - strandat 736.366 kb on - strandat 736.366 kb on - strandat 736.366 kb on - strandat 736.457 kb on + strandat 736.457 kb on + strandat 736.458 kb on - strandat 736.458 kb on - strandat 736.527 kb on - strandat 736.569 kb on + strand, within OHPLBJKB_00719at 736.569 kb on + strand, within OHPLBJKB_00719at 736.569 kb on + strand, within OHPLBJKB_00719at 736.569 kb on + strand, within OHPLBJKB_00719at 736.570 kb on - strand, within OHPLBJKB_00719at 736.570 kb on - strand, within OHPLBJKB_00719at 736.646 kb on + strand, within OHPLBJKB_00719at 736.646 kb on + strand, within OHPLBJKB_00719at 736.646 kb on + strand, within OHPLBJKB_00719at 736.646 kb on + strand, within OHPLBJKB_00719at 736.646 kb on + strand, within OHPLBJKB_00719at 736.646 kb on + strand, within OHPLBJKB_00719at 736.646 kb on + strand, within OHPLBJKB_00719at 736.646 kb on + strand, within OHPLBJKB_00719at 736.647 kb on - strand, within OHPLBJKB_00719at 736.647 kb on - strand, within OHPLBJKB_00719at 736.679 kb on + strand, within OHPLBJKB_00719at 736.679 kb on + strand, within OHPLBJKB_00719at 736.679 kb on + strand, within OHPLBJKB_00719at 736.679 kb on + strand, within OHPLBJKB_00719at 736.680 kb on - strand, within OHPLBJKB_00719at 736.680 kb on - strand, within OHPLBJKB_00719at 736.680 kb on - strand, within OHPLBJKB_00719at 736.737 kb on - strand, within OHPLBJKB_00719at 736.737 kb on - strand, within OHPLBJKB_00719at 736.768 kb on - strand, within OHPLBJKB_00719at 736.772 kb on - strand, within OHPLBJKB_00719at 736.796 kb on + strand, within OHPLBJKB_00719at 736.796 kb on + strand, within OHPLBJKB_00719at 736.796 kb on + strand, within OHPLBJKB_00719at 736.796 kb on + strand, within OHPLBJKB_00719at 736.797 kb on - strand, within OHPLBJKB_00719at 736.797 kb on - strand, within OHPLBJKB_00719at 736.797 kb on - strand, within OHPLBJKB_00719at 736.797 kb on - strand, within OHPLBJKB_00719at 736.797 kb on - strand, within OHPLBJKB_00719at 736.797 kb on - strand, within OHPLBJKB_00719at 736.815 kb on - strand, within OHPLBJKB_00719at 736.826 kb on + strand, within OHPLBJKB_00719at 736.826 kb on + strand, within OHPLBJKB_00719at 736.826 kb on + strand, within OHPLBJKB_00719at 736.827 kb on - strand, within OHPLBJKB_00719at 736.888 kb on + strand, within OHPLBJKB_00719at 736.894 kb on + strand, within OHPLBJKB_00719at 736.895 kb on - strand, within OHPLBJKB_00719at 736.942 kb on + strand, within OHPLBJKB_00719at 736.942 kb on + strand, within OHPLBJKB_00719at 736.943 kb on - strand, within OHPLBJKB_00719at 736.967 kb on + strand, within OHPLBJKB_00719at 736.975 kb on + strand, within OHPLBJKB_00719at 736.975 kb on + strand, within OHPLBJKB_00719at 736.976 kb on - strand, within OHPLBJKB_00719at 736.976 kb on - strand, within OHPLBJKB_00719at 737.050 kb on + strand, within OHPLBJKB_00719at 737.050 kb on + strand, within OHPLBJKB_00719at 737.051 kb on - strand, within OHPLBJKB_00719at 737.051 kb on - strand, within OHPLBJKB_00719at 737.051 kb on - strand, within OHPLBJKB_00719at 737.114 kb on + strand, within OHPLBJKB_00719at 737.114 kb on + strand, within OHPLBJKB_00719at 737.130 kb on + strand, within OHPLBJKB_00719at 737.130 kb on + strand, within OHPLBJKB_00719at 737.130 kb on + strand, within OHPLBJKB_00719at 737.131 kb on - strand, within OHPLBJKB_00719at 737.131 kb on - strand, within OHPLBJKB_00719at 737.131 kb on - strand, within OHPLBJKB_00719at 737.131 kb on - strand, within OHPLBJKB_00719at 737.328 kb on + strand, within OHPLBJKB_00719at 737.448 kb on + strandat 737.525 kb on - strandat 737.525 kb on - strandat 737.528 kb on + strandat 737.528 kb on + strandat 737.529 kb on - strandat 737.949 kb on + strand, within OHPLBJKB_00720at 737.949 kb on + strand, within OHPLBJKB_00720at 737.950 kb on - strand, within OHPLBJKB_00720at 738.064 kb on + strand, within OHPLBJKB_00720at 738.070 kb on + strand, within OHPLBJKB_00720at 738.070 kb on + strand, within OHPLBJKB_00720at 738.070 kb on + strand, within OHPLBJKB_00720at 738.070 kb on + strand, within OHPLBJKB_00720at 738.071 kb on - strand, within OHPLBJKB_00720at 738.071 kb on - strand, within OHPLBJKB_00720at 738.071 kb on - strand, within OHPLBJKB_00720at 738.071 kb on - strand, within OHPLBJKB_00720at 738.091 kb on - strand, within OHPLBJKB_00720at 738.171 kb on + strand, within OHPLBJKB_00720at 738.172 kb on - strand, within OHPLBJKB_00720at 738.218 kb on + strand, within OHPLBJKB_00720at 738.234 kb on + strand, within OHPLBJKB_00720at 738.234 kb on + strand, within OHPLBJKB_00720at 738.256 kb on - strand, within OHPLBJKB_00720at 738.262 kb on + strand, within OHPLBJKB_00720at 738.262 kb on + strand, within OHPLBJKB_00720at 738.262 kb on + strand, within OHPLBJKB_00720at 738.263 kb on - strand, within OHPLBJKB_00720at 738.263 kb on - strand, within OHPLBJKB_00720at 738.263 kb on - strand, within OHPLBJKB_00720at 738.263 kb on - strand, within OHPLBJKB_00720at 738.263 kb on - strand, within OHPLBJKB_00720at 738.271 kb on + strand, within OHPLBJKB_00720at 738.272 kb on - strand, within OHPLBJKB_00720at 738.444 kb on - strand, within OHPLBJKB_00720at 738.488 kb on + strandat 738.488 kb on + strandat 738.489 kb on - strandat 738.489 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction iri MOI10
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735,439 - OHPLBJKB_00717 0.52 +0.1
735,443 - OHPLBJKB_00717 0.52 -0.5
735,471 + OHPLBJKB_00717 0.56 +1.3
735,472 - OHPLBJKB_00717 0.56 +0.1
735,472 - OHPLBJKB_00717 0.56 -1.0
735,502 + OHPLBJKB_00717 0.59 -0.3
735,503 - OHPLBJKB_00717 0.60 -0.0
735,553 + OHPLBJKB_00717 0.66 -0.3
735,572 - OHPLBJKB_00717 0.68 +0.1
735,633 - OHPLBJKB_00717 0.75 +0.1
735,638 - OHPLBJKB_00717 0.76 +0.6
735,638 - OHPLBJKB_00717 0.76 +0.2
735,659 + OHPLBJKB_00717 0.78 -1.7
735,762 + +0.3
735,762 + +0.2
735,762 + +0.2
735,762 + -0.2
735,763 - -0.0
735,806 - +1.3
735,833 - +0.3
735,878 - -0.2
735,944 + OHPLBJKB_00718 0.17 +0.1
735,945 - OHPLBJKB_00718 0.17 +0.0
735,945 - OHPLBJKB_00718 0.17 -1.2
735,945 - OHPLBJKB_00718 0.17 -0.6
735,945 - OHPLBJKB_00718 0.17 +0.2
735,945 - OHPLBJKB_00718 0.17 +0.3
735,946 + OHPLBJKB_00718 0.17 -0.4
735,947 - OHPLBJKB_00718 0.18 +0.7
736,060 + OHPLBJKB_00718 0.38 +1.4
736,093 + OHPLBJKB_00718 0.44 +0.6
736,094 - OHPLBJKB_00718 0.44 -0.1
736,094 - OHPLBJKB_00718 0.44 +0.1
736,094 - OHPLBJKB_00718 0.44 +0.6
736,181 + OHPLBJKB_00718 0.59 -0.6
736,181 + OHPLBJKB_00718 0.59 +0.4
736,181 + OHPLBJKB_00718 0.59 +0.1
736,182 - OHPLBJKB_00718 0.60 +0.8
736,182 - OHPLBJKB_00718 0.60 -1.7
736,365 + +0.4
736,365 + -1.0
736,365 + -0.6
736,366 - -2.2
736,366 - +1.2
736,366 - +0.2
736,366 - -0.3
736,457 + -0.4
736,457 + +0.3
736,458 - +0.4
736,458 - +0.5
736,527 - +0.5
736,569 + OHPLBJKB_00719 0.12 -0.6
736,569 + OHPLBJKB_00719 0.12 +0.1
736,569 + OHPLBJKB_00719 0.12 -0.9
736,569 + OHPLBJKB_00719 0.12 +0.0
736,570 - OHPLBJKB_00719 0.12 +0.5
736,570 - OHPLBJKB_00719 0.12 -1.0
736,646 + OHPLBJKB_00719 0.19 +0.4
736,646 + OHPLBJKB_00719 0.19 -0.5
736,646 + OHPLBJKB_00719 0.19 +0.4
736,646 + OHPLBJKB_00719 0.19 +1.2
736,646 + OHPLBJKB_00719 0.19 +1.7
736,646 + OHPLBJKB_00719 0.19 -0.1
736,646 + OHPLBJKB_00719 0.19 -1.2
736,646 + OHPLBJKB_00719 0.19 +0.8
736,647 - OHPLBJKB_00719 0.19 -1.1
736,647 - OHPLBJKB_00719 0.19 -0.0
736,679 + OHPLBJKB_00719 0.22 -0.8
736,679 + OHPLBJKB_00719 0.22 +1.1
736,679 + OHPLBJKB_00719 0.22 -0.1
736,679 + OHPLBJKB_00719 0.22 +0.5
736,680 - OHPLBJKB_00719 0.23 -0.6
736,680 - OHPLBJKB_00719 0.23 -0.9
736,680 - OHPLBJKB_00719 0.23 -0.4
736,737 - OHPLBJKB_00719 0.28 -0.1
736,737 - OHPLBJKB_00719 0.28 +0.5
736,768 - OHPLBJKB_00719 0.31 +0.0
736,772 - OHPLBJKB_00719 0.31 +0.7
736,796 + OHPLBJKB_00719 0.33 +0.2
736,796 + OHPLBJKB_00719 0.33 -1.7
736,796 + OHPLBJKB_00719 0.33 -0.1
736,796 + OHPLBJKB_00719 0.33 +0.1
736,797 - OHPLBJKB_00719 0.33 +1.4
736,797 - OHPLBJKB_00719 0.33 +0.1
736,797 - OHPLBJKB_00719 0.33 -0.3
736,797 - OHPLBJKB_00719 0.33 +1.0
736,797 - OHPLBJKB_00719 0.33 -0.4
736,797 - OHPLBJKB_00719 0.33 +0.6
736,815 - OHPLBJKB_00719 0.35 +0.5
736,826 + OHPLBJKB_00719 0.36 -0.7
736,826 + OHPLBJKB_00719 0.36 -1.0
736,826 + OHPLBJKB_00719 0.36 -1.4
736,827 - OHPLBJKB_00719 0.36 +0.6
736,888 + OHPLBJKB_00719 0.42 -0.8
736,894 + OHPLBJKB_00719 0.42 -0.2
736,895 - OHPLBJKB_00719 0.43 +1.0
736,942 + OHPLBJKB_00719 0.47 +0.6
736,942 + OHPLBJKB_00719 0.47 +1.2
736,943 - OHPLBJKB_00719 0.47 +0.8
736,967 + OHPLBJKB_00719 0.49 -0.1
736,975 + OHPLBJKB_00719 0.50 -0.2
736,975 + OHPLBJKB_00719 0.50 -1.3
736,976 - OHPLBJKB_00719 0.50 +0.2
736,976 - OHPLBJKB_00719 0.50 -0.0
737,050 + OHPLBJKB_00719 0.57 -0.3
737,050 + OHPLBJKB_00719 0.57 +0.3
737,051 - OHPLBJKB_00719 0.57 -0.4
737,051 - OHPLBJKB_00719 0.57 +1.3
737,051 - OHPLBJKB_00719 0.57 -0.8
737,114 + OHPLBJKB_00719 0.63 -0.2
737,114 + OHPLBJKB_00719 0.63 +0.2
737,130 + OHPLBJKB_00719 0.65 -0.2
737,130 + OHPLBJKB_00719 0.65 -2.1
737,130 + OHPLBJKB_00719 0.65 +1.4
737,131 - OHPLBJKB_00719 0.65 -0.1
737,131 - OHPLBJKB_00719 0.65 -1.7
737,131 - OHPLBJKB_00719 0.65 +1.2
737,131 - OHPLBJKB_00719 0.65 +0.5
737,328 + OHPLBJKB_00719 0.83 +0.8
737,448 + -0.2
737,525 - -0.7
737,525 - +0.3
737,528 + -0.3
737,528 + +0.3
737,529 - -0.2
737,949 + OHPLBJKB_00720 0.41 -0.1
737,949 + OHPLBJKB_00720 0.41 +0.4
737,950 - OHPLBJKB_00720 0.41 -1.3
738,064 + OHPLBJKB_00720 0.52 +0.1
738,070 + OHPLBJKB_00720 0.52 +0.2
738,070 + OHPLBJKB_00720 0.52 -1.3
738,070 + OHPLBJKB_00720 0.52 -1.0
738,070 + OHPLBJKB_00720 0.52 -0.2
738,071 - OHPLBJKB_00720 0.52 -0.6
738,071 - OHPLBJKB_00720 0.52 -1.2
738,071 - OHPLBJKB_00720 0.52 -0.1
738,071 - OHPLBJKB_00720 0.52 -0.5
738,091 - OHPLBJKB_00720 0.54 +0.1
738,171 + OHPLBJKB_00720 0.62 +0.1
738,172 - OHPLBJKB_00720 0.62 +0.3
738,218 + OHPLBJKB_00720 0.66 -1.1
738,234 + OHPLBJKB_00720 0.67 +0.2
738,234 + OHPLBJKB_00720 0.67 -0.4
738,256 - OHPLBJKB_00720 0.69 -2.0
738,262 + OHPLBJKB_00720 0.70 -2.3
738,262 + OHPLBJKB_00720 0.70 -0.7
738,262 + OHPLBJKB_00720 0.70 -0.4
738,263 - OHPLBJKB_00720 0.70 -0.2
738,263 - OHPLBJKB_00720 0.70 +0.1
738,263 - OHPLBJKB_00720 0.70 -0.2
738,263 - OHPLBJKB_00720 0.70 -1.4
738,263 - OHPLBJKB_00720 0.70 -0.2
738,271 + OHPLBJKB_00720 0.71 +0.1
738,272 - OHPLBJKB_00720 0.71 -0.7
738,444 - OHPLBJKB_00720 0.87 +0.9
738,488 + +0.1
738,488 + -0.8
738,489 - +0.5
738,489 - -1.3

Or see this region's nucleotide sequence