Experiment: iri MOI10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00600 and OHPLBJKB_00601 are separated by 37 nucleotides OHPLBJKB_00601 and OHPLBJKB_00602 are separated by 146 nucleotides OHPLBJKB_00602 and OHPLBJKB_00603 are separated by 3 nucleotides OHPLBJKB_00603 and OHPLBJKB_00604 are separated by 344 nucleotides
OHPLBJKB_00600: OHPLBJKB_00600 - putative protein YqjD, at 612,308 to 612,613
_00600
OHPLBJKB_00601: OHPLBJKB_00601 - Protein YqjC, at 612,651 to 613,019
_00601
OHPLBJKB_00602: OHPLBJKB_00602 - Modulator protein MzrA, at 613,166 to 613,549
_00602
OHPLBJKB_00603: OHPLBJKB_00603 - Inner membrane protein YqjA, at 613,553 to 614,215
_00603
OHPLBJKB_00604: OHPLBJKB_00604 - Putative L-lactate dehydrogenase operon regulatory protein, at 614,560 to 615,336
_00604
Position (kb) 613
614
615 Strain fitness (log2 ratio) -2
-1
0
1 at 612.596 kb on - strand at 612.613 kb on + strand at 612.613 kb on + strand at 612.614 kb on - strand at 612.631 kb on + strand at 612.631 kb on + strand at 612.631 kb on + strand at 612.632 kb on - strand at 612.632 kb on - strand at 612.632 kb on - strand at 612.632 kb on - strand at 612.632 kb on - strand at 612.632 kb on - strand at 612.636 kb on - strand at 612.636 kb on - strand at 612.642 kb on + strand at 612.642 kb on + strand at 612.643 kb on - strand at 612.652 kb on + strand at 612.830 kb on + strand, within OHPLBJKB_00601 at 612.866 kb on + strand, within OHPLBJKB_00601 at 612.910 kb on + strand, within OHPLBJKB_00601 at 612.910 kb on + strand, within OHPLBJKB_00601 at 612.910 kb on + strand, within OHPLBJKB_00601 at 612.911 kb on - strand, within OHPLBJKB_00601 at 612.911 kb on - strand, within OHPLBJKB_00601 at 612.930 kb on - strand, within OHPLBJKB_00601 at 612.964 kb on + strand, within OHPLBJKB_00601 at 612.964 kb on + strand, within OHPLBJKB_00601 at 612.964 kb on + strand, within OHPLBJKB_00601 at 612.964 kb on + strand, within OHPLBJKB_00601 at 612.964 kb on + strand, within OHPLBJKB_00601 at 612.965 kb on - strand, within OHPLBJKB_00601 at 612.965 kb on - strand, within OHPLBJKB_00601 at 612.969 kb on - strand, within OHPLBJKB_00601 at 612.969 kb on - strand, within OHPLBJKB_00601 at 612.977 kb on + strand, within OHPLBJKB_00601 at 612.978 kb on - strand, within OHPLBJKB_00601 at 613.000 kb on - strand at 613.000 kb on - strand at 613.000 kb on - strand at 613.013 kb on - strand at 613.048 kb on + strand at 613.049 kb on - strand at 613.049 kb on - strand at 613.051 kb on + strand at 613.051 kb on + strand at 613.051 kb on + strand at 613.052 kb on - strand at 613.052 kb on - strand at 613.052 kb on - strand at 613.052 kb on - strand at 613.052 kb on - strand at 613.106 kb on - strand at 613.112 kb on - strand at 613.120 kb on - strand at 613.145 kb on + strand at 613.187 kb on - strand at 613.226 kb on - strand, within OHPLBJKB_00602 at 613.226 kb on - strand, within OHPLBJKB_00602 at 613.248 kb on + strand, within OHPLBJKB_00602 at 613.249 kb on - strand, within OHPLBJKB_00602 at 613.249 kb on - strand, within OHPLBJKB_00602 at 613.249 kb on - strand, within OHPLBJKB_00602 at 613.249 kb on - strand, within OHPLBJKB_00602 at 613.315 kb on + strand, within OHPLBJKB_00602 at 613.315 kb on + strand, within OHPLBJKB_00602 at 613.315 kb on + strand, within OHPLBJKB_00602 at 613.320 kb on - strand, within OHPLBJKB_00602 at 613.320 kb on - strand, within OHPLBJKB_00602 at 613.345 kb on + strand, within OHPLBJKB_00602 at 613.441 kb on + strand, within OHPLBJKB_00602 at 613.496 kb on + strand, within OHPLBJKB_00602 at 613.496 kb on + strand, within OHPLBJKB_00602 at 613.496 kb on + strand, within OHPLBJKB_00602 at 613.541 kb on + strand at 613.542 kb on - strand at 613.665 kb on + strand, within OHPLBJKB_00603 at 613.666 kb on - strand, within OHPLBJKB_00603 at 613.698 kb on + strand, within OHPLBJKB_00603 at 613.698 kb on + strand, within OHPLBJKB_00603 at 613.698 kb on + strand, within OHPLBJKB_00603 at 613.698 kb on + strand, within OHPLBJKB_00603 at 613.722 kb on - strand, within OHPLBJKB_00603 at 613.822 kb on + strand, within OHPLBJKB_00603 at 613.823 kb on - strand, within OHPLBJKB_00603 at 613.836 kb on - strand, within OHPLBJKB_00603 at 613.956 kb on + strand, within OHPLBJKB_00603 at 613.956 kb on + strand, within OHPLBJKB_00603 at 613.956 kb on + strand, within OHPLBJKB_00603 at 613.957 kb on - strand, within OHPLBJKB_00603 at 614.057 kb on + strand, within OHPLBJKB_00603 at 614.130 kb on + strand, within OHPLBJKB_00603 at 614.130 kb on + strand, within OHPLBJKB_00603 at 614.131 kb on - strand, within OHPLBJKB_00603 at 614.131 kb on - strand, within OHPLBJKB_00603 at 614.221 kb on - strand at 614.256 kb on - strand at 614.278 kb on + strand at 614.292 kb on + strand at 614.292 kb on + strand at 614.310 kb on + strand at 614.311 kb on - strand at 614.311 kb on - strand at 614.330 kb on + strand at 614.330 kb on + strand at 614.330 kb on + strand at 614.352 kb on + strand at 614.389 kb on + strand at 614.390 kb on - strand at 614.390 kb on - strand at 614.427 kb on + strand at 614.427 kb on + strand at 614.427 kb on + strand at 614.428 kb on - strand at 614.428 kb on - strand at 614.482 kb on + strand at 614.482 kb on + strand at 614.499 kb on + strand at 614.499 kb on + strand at 614.501 kb on + strand at 614.502 kb on - strand at 614.565 kb on + strand at 614.663 kb on - strand, within OHPLBJKB_00604 at 614.706 kb on + strand, within OHPLBJKB_00604 at 614.769 kb on + strand, within OHPLBJKB_00604 at 614.888 kb on - strand, within OHPLBJKB_00604 at 615.015 kb on + strand, within OHPLBJKB_00604 at 615.061 kb on + strand, within OHPLBJKB_00604 at 615.062 kb on + strand, within OHPLBJKB_00604 at 615.062 kb on + strand, within OHPLBJKB_00604 at 615.063 kb on - strand, within OHPLBJKB_00604 at 615.081 kb on + strand, within OHPLBJKB_00604 at 615.082 kb on - strand, within OHPLBJKB_00604 at 615.082 kb on - strand, within OHPLBJKB_00604 at 615.129 kb on + strand, within OHPLBJKB_00604 at 615.129 kb on + strand, within OHPLBJKB_00604 at 615.129 kb on + strand, within OHPLBJKB_00604 at 615.142 kb on - strand, within OHPLBJKB_00604 at 615.155 kb on + strand, within OHPLBJKB_00604 at 615.155 kb on + strand, within OHPLBJKB_00604 at 615.155 kb on + strand, within OHPLBJKB_00604 at 615.156 kb on - strand, within OHPLBJKB_00604 at 615.194 kb on - strand, within OHPLBJKB_00604
Per-strain Table
Position Strand Gene LocusTag Fraction iri MOI10 remove 612,596 - +0.0 612,613 + -0.2 612,613 + -0.3 612,614 - +1.2 612,631 + +0.8 612,631 + -1.6 612,631 + +0.5 612,632 - -1.9 612,632 - +0.8 612,632 - -0.6 612,632 - -0.3 612,632 - +0.7 612,632 - -1.5 612,636 - +0.1 612,636 - -0.2 612,642 + -0.4 612,642 + +1.7 612,643 - -0.4 612,652 + +0.4 612,830 + OHPLBJKB_00601 0.49 -1.0 612,866 + OHPLBJKB_00601 0.58 -0.3 612,910 + OHPLBJKB_00601 0.70 +0.1 612,910 + OHPLBJKB_00601 0.70 -2.0 612,910 + OHPLBJKB_00601 0.70 +0.1 612,911 - OHPLBJKB_00601 0.70 -0.1 612,911 - OHPLBJKB_00601 0.70 +0.4 612,930 - OHPLBJKB_00601 0.76 +0.5 612,964 + OHPLBJKB_00601 0.85 +0.2 612,964 + OHPLBJKB_00601 0.85 -1.5 612,964 + OHPLBJKB_00601 0.85 -0.8 612,964 + OHPLBJKB_00601 0.85 -0.9 612,964 + OHPLBJKB_00601 0.85 -0.2 612,965 - OHPLBJKB_00601 0.85 -1.2 612,965 - OHPLBJKB_00601 0.85 -0.1 612,969 - OHPLBJKB_00601 0.86 -0.4 612,969 - OHPLBJKB_00601 0.86 -0.6 612,977 + OHPLBJKB_00601 0.88 -0.8 612,978 - OHPLBJKB_00601 0.89 +1.0 613,000 - +0.0 613,000 - +0.1 613,000 - +1.2 613,013 - +0.7 613,048 + +0.4 613,049 - +1.1 613,049 - -0.0 613,051 + +0.6 613,051 + -0.1 613,051 + -0.6 613,052 - -0.0 613,052 - -0.0 613,052 - +1.1 613,052 - +0.5 613,052 - -0.5 613,106 - +0.3 613,112 - -1.5 613,120 - -0.7 613,145 + -1.5 613,187 - +0.1 613,226 - OHPLBJKB_00602 0.16 -0.9 613,226 - OHPLBJKB_00602 0.16 +1.4 613,248 + OHPLBJKB_00602 0.21 -0.2 613,249 - OHPLBJKB_00602 0.22 -0.2 613,249 - OHPLBJKB_00602 0.22 +0.4 613,249 - OHPLBJKB_00602 0.22 -0.7 613,249 - OHPLBJKB_00602 0.22 -0.8 613,315 + OHPLBJKB_00602 0.39 -0.8 613,315 + OHPLBJKB_00602 0.39 +0.8 613,315 + OHPLBJKB_00602 0.39 -1.0 613,320 - OHPLBJKB_00602 0.40 +0.1 613,320 - OHPLBJKB_00602 0.40 -0.1 613,345 + OHPLBJKB_00602 0.47 -0.2 613,441 + OHPLBJKB_00602 0.72 -1.6 613,496 + OHPLBJKB_00602 0.86 +0.1 613,496 + OHPLBJKB_00602 0.86 +0.5 613,496 + OHPLBJKB_00602 0.86 -0.0 613,541 + +0.2 613,542 - +0.3 613,665 + OHPLBJKB_00603 0.17 -0.4 613,666 - OHPLBJKB_00603 0.17 +0.1 613,698 + OHPLBJKB_00603 0.22 +0.8 613,698 + OHPLBJKB_00603 0.22 -0.3 613,698 + OHPLBJKB_00603 0.22 -0.3 613,698 + OHPLBJKB_00603 0.22 -1.0 613,722 - OHPLBJKB_00603 0.25 -0.5 613,822 + OHPLBJKB_00603 0.41 +1.3 613,823 - OHPLBJKB_00603 0.41 -0.9 613,836 - OHPLBJKB_00603 0.43 -1.3 613,956 + OHPLBJKB_00603 0.61 -1.7 613,956 + OHPLBJKB_00603 0.61 -0.9 613,956 + OHPLBJKB_00603 0.61 -0.5 613,957 - OHPLBJKB_00603 0.61 -0.7 614,057 + OHPLBJKB_00603 0.76 -1.6 614,130 + OHPLBJKB_00603 0.87 -0.6 614,130 + OHPLBJKB_00603 0.87 -0.8 614,131 - OHPLBJKB_00603 0.87 -0.7 614,131 - OHPLBJKB_00603 0.87 -0.9 614,221 - -1.9 614,256 - +1.0 614,278 + -1.5 614,292 + +0.6 614,292 + -0.6 614,310 + -0.2 614,311 - +1.0 614,311 - -0.2 614,330 + -0.4 614,330 + -0.2 614,330 + -1.6 614,352 + +0.1 614,389 + -0.6 614,390 - +0.9 614,390 - -0.6 614,427 + +0.8 614,427 + -0.3 614,427 + -1.9 614,428 - -1.5 614,428 - -1.0 614,482 + +0.2 614,482 + +0.0 614,499 + -0.2 614,499 + -0.2 614,501 + -0.2 614,502 - -0.7 614,565 + +1.0 614,663 - OHPLBJKB_00604 0.13 -1.5 614,706 + OHPLBJKB_00604 0.19 -0.8 614,769 + OHPLBJKB_00604 0.27 -0.5 614,888 - OHPLBJKB_00604 0.42 -0.7 615,015 + OHPLBJKB_00604 0.59 -0.2 615,061 + OHPLBJKB_00604 0.64 +1.1 615,062 + OHPLBJKB_00604 0.65 -0.8 615,062 + OHPLBJKB_00604 0.65 +0.4 615,063 - OHPLBJKB_00604 0.65 -1.9 615,081 + OHPLBJKB_00604 0.67 -0.6 615,082 - OHPLBJKB_00604 0.67 -0.7 615,082 - OHPLBJKB_00604 0.67 -0.4 615,129 + OHPLBJKB_00604 0.73 +0.8 615,129 + OHPLBJKB_00604 0.73 -0.2 615,129 + OHPLBJKB_00604 0.73 -1.4 615,142 - OHPLBJKB_00604 0.75 -1.7 615,155 + OHPLBJKB_00604 0.77 +0.2 615,155 + OHPLBJKB_00604 0.77 -1.4 615,155 + OHPLBJKB_00604 0.77 +0.1 615,156 - OHPLBJKB_00604 0.77 -0.4 615,194 - OHPLBJKB_00604 0.82 -0.6
Or see this region's nucleotide sequence