Experiment: iri MOI10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OHPLBJKB_00272 and OHPLBJKB_00273 are separated by 18 nucleotides OHPLBJKB_00273 and OHPLBJKB_00274 are separated by 127 nucleotides OHPLBJKB_00274 and OHPLBJKB_00275 are separated by 10 nucleotides
OHPLBJKB_00272: OHPLBJKB_00272 - Glycogen synthase, at 295,831 to 297,264
_00272
OHPLBJKB_00273: OHPLBJKB_00273 - Maltodextrin phosphorylase, at 297,283 to 299,730
_00273
OHPLBJKB_00274: OHPLBJKB_00274 - hypothetical protein, at 299,858 to 300,196
_00274
OHPLBJKB_00275: OHPLBJKB_00275 - hypothetical protein, at 300,207 to 301,277
_00275
Position (kb) 297
298
299
300 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 296.304 kb on + strand, within OHPLBJKB_00272 at 296.305 kb on - strand, within OHPLBJKB_00272 at 296.305 kb on - strand, within OHPLBJKB_00272 at 296.324 kb on - strand, within OHPLBJKB_00272 at 296.339 kb on - strand, within OHPLBJKB_00272 at 296.339 kb on - strand, within OHPLBJKB_00272 at 296.339 kb on - strand, within OHPLBJKB_00272 at 296.385 kb on + strand, within OHPLBJKB_00272 at 296.385 kb on + strand, within OHPLBJKB_00272 at 296.437 kb on + strand, within OHPLBJKB_00272 at 296.438 kb on - strand, within OHPLBJKB_00272 at 296.438 kb on - strand, within OHPLBJKB_00272 at 296.440 kb on + strand, within OHPLBJKB_00272 at 296.473 kb on + strand, within OHPLBJKB_00272 at 296.562 kb on - strand, within OHPLBJKB_00272 at 296.606 kb on + strand, within OHPLBJKB_00272 at 296.606 kb on + strand, within OHPLBJKB_00272 at 296.606 kb on + strand, within OHPLBJKB_00272 at 296.607 kb on - strand, within OHPLBJKB_00272 at 296.607 kb on - strand, within OHPLBJKB_00272 at 296.646 kb on + strand, within OHPLBJKB_00272 at 296.646 kb on + strand, within OHPLBJKB_00272 at 296.646 kb on + strand, within OHPLBJKB_00272 at 296.659 kb on - strand, within OHPLBJKB_00272 at 296.670 kb on - strand, within OHPLBJKB_00272 at 296.688 kb on + strand, within OHPLBJKB_00272 at 296.689 kb on - strand, within OHPLBJKB_00272 at 296.701 kb on - strand, within OHPLBJKB_00272 at 296.995 kb on + strand, within OHPLBJKB_00272 at 296.996 kb on - strand, within OHPLBJKB_00272 at 297.011 kb on + strand, within OHPLBJKB_00272 at 297.105 kb on + strand, within OHPLBJKB_00272 at 297.106 kb on - strand, within OHPLBJKB_00272 at 297.106 kb on - strand, within OHPLBJKB_00272 at 297.106 kb on - strand, within OHPLBJKB_00272 at 297.149 kb on + strand at 297.150 kb on - strand at 297.247 kb on + strand at 297.248 kb on - strand at 297.262 kb on + strand at 297.262 kb on + strand at 297.280 kb on + strand at 297.280 kb on + strand at 297.281 kb on - strand at 297.281 kb on - strand at 297.282 kb on + strand at 297.283 kb on - strand at 297.283 kb on - strand at 297.297 kb on + strand at 297.298 kb on - strand at 297.298 kb on - strand at 297.298 kb on - strand at 297.301 kb on + strand at 297.301 kb on + strand at 297.302 kb on - strand at 297.302 kb on - strand at 297.302 kb on - strand at 297.323 kb on + strand at 297.323 kb on + strand at 297.323 kb on + strand at 297.333 kb on + strand at 297.334 kb on - strand at 297.334 kb on - strand at 297.342 kb on + strand at 297.342 kb on + strand at 297.349 kb on + strand at 297.419 kb on + strand at 297.419 kb on + strand at 297.419 kb on + strand at 297.419 kb on + strand at 297.419 kb on + strand at 297.420 kb on - strand at 297.420 kb on - strand at 297.420 kb on - strand at 297.420 kb on - strand at 297.420 kb on - strand at 297.420 kb on - strand at 297.456 kb on - strand at 297.503 kb on - strand at 297.503 kb on - strand at 297.575 kb on + strand, within OHPLBJKB_00273 at 297.575 kb on + strand, within OHPLBJKB_00273 at 297.603 kb on - strand, within OHPLBJKB_00273 at 297.740 kb on - strand, within OHPLBJKB_00273 at 297.744 kb on + strand, within OHPLBJKB_00273 at 297.794 kb on - strand, within OHPLBJKB_00273 at 297.844 kb on + strand, within OHPLBJKB_00273 at 297.844 kb on + strand, within OHPLBJKB_00273 at 297.845 kb on - strand, within OHPLBJKB_00273 at 297.845 kb on - strand, within OHPLBJKB_00273 at 297.846 kb on + strand, within OHPLBJKB_00273 at 297.846 kb on + strand, within OHPLBJKB_00273 at 297.847 kb on - strand, within OHPLBJKB_00273 at 297.847 kb on - strand, within OHPLBJKB_00273 at 297.847 kb on - strand, within OHPLBJKB_00273 at 297.847 kb on - strand, within OHPLBJKB_00273 at 297.939 kb on - strand, within OHPLBJKB_00273 at 297.949 kb on + strand, within OHPLBJKB_00273 at 298.036 kb on + strand, within OHPLBJKB_00273 at 298.037 kb on - strand, within OHPLBJKB_00273 at 298.037 kb on - strand, within OHPLBJKB_00273 at 298.056 kb on + strand, within OHPLBJKB_00273 at 298.057 kb on - strand, within OHPLBJKB_00273 at 298.076 kb on + strand, within OHPLBJKB_00273 at 298.076 kb on + strand, within OHPLBJKB_00273 at 298.076 kb on + strand, within OHPLBJKB_00273 at 298.076 kb on + strand, within OHPLBJKB_00273 at 298.077 kb on - strand, within OHPLBJKB_00273 at 298.077 kb on - strand, within OHPLBJKB_00273 at 298.077 kb on - strand, within OHPLBJKB_00273 at 298.108 kb on + strand, within OHPLBJKB_00273 at 298.142 kb on - strand, within OHPLBJKB_00273 at 298.142 kb on - strand, within OHPLBJKB_00273 at 298.142 kb on - strand, within OHPLBJKB_00273 at 298.197 kb on + strand, within OHPLBJKB_00273 at 298.198 kb on - strand, within OHPLBJKB_00273 at 298.198 kb on - strand, within OHPLBJKB_00273 at 298.205 kb on - strand, within OHPLBJKB_00273 at 298.205 kb on - strand, within OHPLBJKB_00273 at 298.205 kb on - strand, within OHPLBJKB_00273 at 298.349 kb on - strand, within OHPLBJKB_00273 at 298.398 kb on + strand, within OHPLBJKB_00273 at 298.399 kb on - strand, within OHPLBJKB_00273 at 298.399 kb on - strand, within OHPLBJKB_00273 at 298.399 kb on - strand, within OHPLBJKB_00273 at 298.454 kb on - strand, within OHPLBJKB_00273 at 298.609 kb on - strand, within OHPLBJKB_00273 at 298.870 kb on + strand, within OHPLBJKB_00273 at 298.870 kb on + strand, within OHPLBJKB_00273 at 298.870 kb on + strand, within OHPLBJKB_00273 at 298.870 kb on + strand, within OHPLBJKB_00273 at 298.870 kb on + strand, within OHPLBJKB_00273 at 298.871 kb on - strand, within OHPLBJKB_00273 at 298.871 kb on - strand, within OHPLBJKB_00273 at 298.871 kb on - strand, within OHPLBJKB_00273 at 298.871 kb on - strand, within OHPLBJKB_00273 at 298.871 kb on - strand, within OHPLBJKB_00273 at 298.871 kb on - strand, within OHPLBJKB_00273 at 298.922 kb on + strand, within OHPLBJKB_00273 at 298.922 kb on + strand, within OHPLBJKB_00273 at 298.923 kb on - strand, within OHPLBJKB_00273 at 298.935 kb on + strand, within OHPLBJKB_00273 at 298.936 kb on - strand, within OHPLBJKB_00273 at 298.936 kb on - strand, within OHPLBJKB_00273 at 298.945 kb on + strand, within OHPLBJKB_00273 at 298.945 kb on + strand, within OHPLBJKB_00273 at 298.945 kb on + strand, within OHPLBJKB_00273 at 298.946 kb on - strand, within OHPLBJKB_00273 at 298.987 kb on + strand, within OHPLBJKB_00273 at 298.987 kb on + strand, within OHPLBJKB_00273 at 299.066 kb on - strand, within OHPLBJKB_00273 at 299.066 kb on - strand, within OHPLBJKB_00273 at 299.068 kb on + strand, within OHPLBJKB_00273 at 299.068 kb on + strand, within OHPLBJKB_00273 at 299.068 kb on + strand, within OHPLBJKB_00273 at 299.069 kb on - strand, within OHPLBJKB_00273 at 299.069 kb on - strand, within OHPLBJKB_00273 at 299.069 kb on - strand, within OHPLBJKB_00273 at 299.069 kb on - strand, within OHPLBJKB_00273 at 299.069 kb on - strand, within OHPLBJKB_00273 at 299.069 kb on - strand, within OHPLBJKB_00273 at 299.069 kb on - strand, within OHPLBJKB_00273 at 299.170 kb on + strand, within OHPLBJKB_00273 at 299.171 kb on - strand, within OHPLBJKB_00273 at 299.259 kb on + strand, within OHPLBJKB_00273 at 299.298 kb on + strand, within OHPLBJKB_00273 at 299.299 kb on - strand, within OHPLBJKB_00273 at 299.349 kb on + strand, within OHPLBJKB_00273 at 299.349 kb on + strand, within OHPLBJKB_00273 at 299.350 kb on - strand, within OHPLBJKB_00273 at 299.350 kb on - strand, within OHPLBJKB_00273 at 299.350 kb on - strand, within OHPLBJKB_00273 at 299.355 kb on + strand, within OHPLBJKB_00273 at 299.419 kb on + strand, within OHPLBJKB_00273 at 299.419 kb on + strand, within OHPLBJKB_00273 at 299.420 kb on - strand, within OHPLBJKB_00273 at 299.422 kb on + strand, within OHPLBJKB_00273 at 299.423 kb on - strand, within OHPLBJKB_00273 at 299.549 kb on + strand at 299.569 kb on + strand at 299.569 kb on + strand at 299.569 kb on + strand at 299.569 kb on + strand at 299.569 kb on + strand at 299.570 kb on - strand at 299.603 kb on - strand at 299.677 kb on - strand at 299.689 kb on + strand at 299.710 kb on - strand at 299.740 kb on + strand at 299.740 kb on + strand at 299.744 kb on + strand at 299.744 kb on + strand at 299.823 kb on + strand at 299.825 kb on + strand at 299.825 kb on + strand at 299.986 kb on + strand, within OHPLBJKB_00274 at 299.986 kb on + strand, within OHPLBJKB_00274 at 299.987 kb on - strand, within OHPLBJKB_00274 at 300.051 kb on + strand, within OHPLBJKB_00274 at 300.150 kb on + strand, within OHPLBJKB_00274 at 300.185 kb on - strand at 300.199 kb on - strand at 300.216 kb on - strand at 300.311 kb on - strand at 300.364 kb on + strand, within OHPLBJKB_00275 at 300.365 kb on - strand, within OHPLBJKB_00275 at 300.368 kb on + strand, within OHPLBJKB_00275 at 300.369 kb on - strand, within OHPLBJKB_00275 at 300.404 kb on + strand, within OHPLBJKB_00275 at 300.554 kb on - strand, within OHPLBJKB_00275 at 300.560 kb on - strand, within OHPLBJKB_00275 at 300.618 kb on + strand, within OHPLBJKB_00275 at 300.620 kb on + strand, within OHPLBJKB_00275 at 300.717 kb on + strand, within OHPLBJKB_00275
Per-strain Table
Position Strand Gene LocusTag Fraction iri MOI10 remove 296,304 + OHPLBJKB_00272 0.33 -0.0 296,305 - OHPLBJKB_00272 0.33 -0.3 296,305 - OHPLBJKB_00272 0.33 -1.9 296,324 - OHPLBJKB_00272 0.34 +1.1 296,339 - OHPLBJKB_00272 0.35 +0.1 296,339 - OHPLBJKB_00272 0.35 +0.8 296,339 - OHPLBJKB_00272 0.35 -0.8 296,385 + OHPLBJKB_00272 0.39 -0.6 296,385 + OHPLBJKB_00272 0.39 -0.4 296,437 + OHPLBJKB_00272 0.42 -0.4 296,438 - OHPLBJKB_00272 0.42 -0.1 296,438 - OHPLBJKB_00272 0.42 +0.1 296,440 + OHPLBJKB_00272 0.42 -0.7 296,473 + OHPLBJKB_00272 0.45 -0.4 296,562 - OHPLBJKB_00272 0.51 +0.5 296,606 + OHPLBJKB_00272 0.54 +0.1 296,606 + OHPLBJKB_00272 0.54 -1.0 296,606 + OHPLBJKB_00272 0.54 +1.4 296,607 - OHPLBJKB_00272 0.54 -0.5 296,607 - OHPLBJKB_00272 0.54 -0.1 296,646 + OHPLBJKB_00272 0.57 -0.2 296,646 + OHPLBJKB_00272 0.57 -0.1 296,646 + OHPLBJKB_00272 0.57 -0.2 296,659 - OHPLBJKB_00272 0.58 -0.4 296,670 - OHPLBJKB_00272 0.59 +0.3 296,688 + OHPLBJKB_00272 0.60 +1.1 296,689 - OHPLBJKB_00272 0.60 +0.4 296,701 - OHPLBJKB_00272 0.61 -0.2 296,995 + OHPLBJKB_00272 0.81 -0.2 296,996 - OHPLBJKB_00272 0.81 +0.5 297,011 + OHPLBJKB_00272 0.82 -0.1 297,105 + OHPLBJKB_00272 0.89 -0.1 297,106 - OHPLBJKB_00272 0.89 -0.5 297,106 - OHPLBJKB_00272 0.89 -0.7 297,106 - OHPLBJKB_00272 0.89 +0.4 297,149 + -0.2 297,150 - -0.6 297,247 + +0.2 297,248 - +0.3 297,262 + -0.6 297,262 + +0.6 297,280 + -0.1 297,280 + +1.4 297,281 - +0.5 297,281 - -0.9 297,282 + -0.6 297,283 - -0.6 297,283 - +0.7 297,297 + +0.1 297,298 - -0.3 297,298 - -1.2 297,298 - -2.5 297,301 + -0.2 297,301 + -0.2 297,302 - -0.2 297,302 - -0.6 297,302 - +0.4 297,323 + -0.2 297,323 + -0.9 297,323 + -0.4 297,333 + +0.2 297,334 - +0.3 297,334 - -2.0 297,342 + +0.6 297,342 + -0.3 297,349 + +0.6 297,419 + +1.1 297,419 + +0.2 297,419 + +0.0 297,419 + +0.1 297,419 + +3.6 297,420 - +0.5 297,420 - -1.2 297,420 - -1.7 297,420 - +1.0 297,420 - +1.0 297,420 - +1.4 297,456 - +0.2 297,503 - +1.1 297,503 - +0.1 297,575 + OHPLBJKB_00273 0.12 +0.6 297,575 + OHPLBJKB_00273 0.12 +0.3 297,603 - OHPLBJKB_00273 0.13 +0.4 297,740 - OHPLBJKB_00273 0.19 +0.3 297,744 + OHPLBJKB_00273 0.19 -0.5 297,794 - OHPLBJKB_00273 0.21 -0.7 297,844 + OHPLBJKB_00273 0.23 -0.1 297,844 + OHPLBJKB_00273 0.23 -0.3 297,845 - OHPLBJKB_00273 0.23 +0.1 297,845 - OHPLBJKB_00273 0.23 +0.9 297,846 + OHPLBJKB_00273 0.23 -0.1 297,846 + OHPLBJKB_00273 0.23 -0.3 297,847 - OHPLBJKB_00273 0.23 +0.4 297,847 - OHPLBJKB_00273 0.23 +1.0 297,847 - OHPLBJKB_00273 0.23 -0.3 297,847 - OHPLBJKB_00273 0.23 -0.9 297,939 - OHPLBJKB_00273 0.27 -0.0 297,949 + OHPLBJKB_00273 0.27 -0.0 298,036 + OHPLBJKB_00273 0.31 -0.3 298,037 - OHPLBJKB_00273 0.31 -0.0 298,037 - OHPLBJKB_00273 0.31 +0.2 298,056 + OHPLBJKB_00273 0.32 +0.3 298,057 - OHPLBJKB_00273 0.32 -0.2 298,076 + OHPLBJKB_00273 0.32 -0.4 298,076 + OHPLBJKB_00273 0.32 +0.7 298,076 + OHPLBJKB_00273 0.32 +1.1 298,076 + OHPLBJKB_00273 0.32 -0.4 298,077 - OHPLBJKB_00273 0.32 +0.6 298,077 - OHPLBJKB_00273 0.32 +0.0 298,077 - OHPLBJKB_00273 0.32 -1.4 298,108 + OHPLBJKB_00273 0.34 -0.2 298,142 - OHPLBJKB_00273 0.35 +0.2 298,142 - OHPLBJKB_00273 0.35 -0.5 298,142 - OHPLBJKB_00273 0.35 -0.5 298,197 + OHPLBJKB_00273 0.37 -0.1 298,198 - OHPLBJKB_00273 0.37 +0.5 298,198 - OHPLBJKB_00273 0.37 +0.3 298,205 - OHPLBJKB_00273 0.38 -0.7 298,205 - OHPLBJKB_00273 0.38 -0.7 298,205 - OHPLBJKB_00273 0.38 +0.2 298,349 - OHPLBJKB_00273 0.44 -1.7 298,398 + OHPLBJKB_00273 0.46 -0.3 298,399 - OHPLBJKB_00273 0.46 +0.6 298,399 - OHPLBJKB_00273 0.46 +0.5 298,399 - OHPLBJKB_00273 0.46 -0.0 298,454 - OHPLBJKB_00273 0.48 -2.7 298,609 - OHPLBJKB_00273 0.54 -0.9 298,870 + OHPLBJKB_00273 0.65 +0.4 298,870 + OHPLBJKB_00273 0.65 +0.1 298,870 + OHPLBJKB_00273 0.65 +0.1 298,870 + OHPLBJKB_00273 0.65 -0.4 298,870 + OHPLBJKB_00273 0.65 -0.2 298,871 - OHPLBJKB_00273 0.65 -0.7 298,871 - OHPLBJKB_00273 0.65 +0.0 298,871 - OHPLBJKB_00273 0.65 -0.7 298,871 - OHPLBJKB_00273 0.65 -0.9 298,871 - OHPLBJKB_00273 0.65 -0.3 298,871 - OHPLBJKB_00273 0.65 +0.7 298,922 + OHPLBJKB_00273 0.67 +0.3 298,922 + OHPLBJKB_00273 0.67 -0.7 298,923 - OHPLBJKB_00273 0.67 -1.0 298,935 + OHPLBJKB_00273 0.67 +0.5 298,936 - OHPLBJKB_00273 0.68 -0.9 298,936 - OHPLBJKB_00273 0.68 -0.4 298,945 + OHPLBJKB_00273 0.68 +0.3 298,945 + OHPLBJKB_00273 0.68 -0.1 298,945 + OHPLBJKB_00273 0.68 +0.7 298,946 - OHPLBJKB_00273 0.68 -0.6 298,987 + OHPLBJKB_00273 0.70 +1.4 298,987 + OHPLBJKB_00273 0.70 +1.8 299,066 - OHPLBJKB_00273 0.73 -0.8 299,066 - OHPLBJKB_00273 0.73 +3.7 299,068 + OHPLBJKB_00273 0.73 -0.2 299,068 + OHPLBJKB_00273 0.73 -0.6 299,068 + OHPLBJKB_00273 0.73 -0.3 299,069 - OHPLBJKB_00273 0.73 -0.9 299,069 - OHPLBJKB_00273 0.73 -1.0 299,069 - OHPLBJKB_00273 0.73 +1.0 299,069 - OHPLBJKB_00273 0.73 -0.4 299,069 - OHPLBJKB_00273 0.73 -1.3 299,069 - OHPLBJKB_00273 0.73 -0.1 299,069 - OHPLBJKB_00273 0.73 +1.1 299,170 + OHPLBJKB_00273 0.77 +0.2 299,171 - OHPLBJKB_00273 0.77 +0.6 299,259 + OHPLBJKB_00273 0.81 -0.2 299,298 + OHPLBJKB_00273 0.82 +0.3 299,299 - OHPLBJKB_00273 0.82 +0.0 299,349 + OHPLBJKB_00273 0.84 -0.6 299,349 + OHPLBJKB_00273 0.84 -1.3 299,350 - OHPLBJKB_00273 0.84 -1.1 299,350 - OHPLBJKB_00273 0.84 -0.2 299,350 - OHPLBJKB_00273 0.84 -0.5 299,355 + OHPLBJKB_00273 0.85 -0.9 299,419 + OHPLBJKB_00273 0.87 +0.5 299,419 + OHPLBJKB_00273 0.87 -1.4 299,420 - OHPLBJKB_00273 0.87 +1.2 299,422 + OHPLBJKB_00273 0.87 +0.8 299,423 - OHPLBJKB_00273 0.87 +0.1 299,549 + -0.4 299,569 + +0.8 299,569 + -0.2 299,569 + +1.9 299,569 + +0.7 299,569 + +0.8 299,570 - -0.8 299,603 - -0.8 299,677 - -0.2 299,689 + -0.1 299,710 - -0.8 299,740 + -0.0 299,740 + +0.1 299,744 + -0.3 299,744 + -1.2 299,823 + -0.8 299,825 + -1.4 299,825 + +0.3 299,986 + OHPLBJKB_00274 0.38 -0.5 299,986 + OHPLBJKB_00274 0.38 -1.2 299,987 - OHPLBJKB_00274 0.38 +0.4 300,051 + OHPLBJKB_00274 0.57 -0.6 300,150 + OHPLBJKB_00274 0.86 -0.8 300,185 - +1.0 300,199 - -1.1 300,216 - -0.9 300,311 - -1.3 300,364 + OHPLBJKB_00275 0.15 +0.3 300,365 - OHPLBJKB_00275 0.15 +0.4 300,368 + OHPLBJKB_00275 0.15 +0.2 300,369 - OHPLBJKB_00275 0.15 -0.6 300,404 + OHPLBJKB_00275 0.18 -0.7 300,554 - OHPLBJKB_00275 0.32 +0.2 300,560 - OHPLBJKB_00275 0.33 -0.6 300,618 + OHPLBJKB_00275 0.38 -0.1 300,620 + OHPLBJKB_00275 0.39 +0.3 300,717 + OHPLBJKB_00275 0.48 -0.4
Or see this region's nucleotide sequence