Strain Fitness in Escherichia fergusonii Becca around EFB2_04554

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
4,784,284	+		EFB2_04553	0.57	+0.7
4,784,285	-		EFB2_04553	0.57	+0.1
4,784,285	-		EFB2_04553	0.57	+2.7
4,784,352	+		EFB2_04553	0.60	-0.0
4,784,353	-		EFB2_04553	0.60	-0.2
4,784,362	+		EFB2_04553	0.61	-0.0
4,784,363	-		EFB2_04553	0.61	+1.5
4,784,412	-		EFB2_04553	0.63	-0.5
4,784,415	+		EFB2_04553	0.63	+0.9
4,784,415	+		EFB2_04553	0.63	-1.2
4,784,427	+		EFB2_04553	0.64	-3.2
4,784,427	+		EFB2_04553	0.64	-1.6
4,784,449	-		EFB2_04553	0.65	+1.5
4,784,449	-		EFB2_04553	0.65	-0.8
4,784,460	+		EFB2_04553	0.66	-0.2
4,784,460	+		EFB2_04553	0.66	-0.6
4,784,460	+		EFB2_04553	0.66	+0.8
4,784,460	+		EFB2_04553	0.66	-0.7
4,784,461	-		EFB2_04553	0.66	-0.4
4,784,461	-		EFB2_04553	0.66	-1.1
4,784,461	-		EFB2_04553	0.66	+3.1
4,784,461	-		EFB2_04553	0.66	-0.2
4,784,461	-		EFB2_04553	0.66	+1.0
4,784,461	-		EFB2_04553	0.66	-2.4
4,784,461	-		EFB2_04553	0.66	-2.5
4,784,461	-		EFB2_04553	0.66	+1.5
4,784,461	-		EFB2_04553	0.66	+2.0
4,784,468	+		EFB2_04553	0.66	+0.5
4,784,479	+		EFB2_04553	0.67	-2.0
4,784,480	-		EFB2_04553	0.67	+1.1
4,784,480	-		EFB2_04553	0.67	+0.7
4,784,573	+		EFB2_04553	0.71	+1.2
4,784,573	+		EFB2_04553	0.71	-0.5
4,784,573	+		EFB2_04553	0.71	-0.4
4,784,573	+		EFB2_04553	0.71	-0.6
4,784,573	+		EFB2_04553	0.71	-0.7
4,784,573	+		EFB2_04553	0.71	+0.5
4,784,573	+		EFB2_04553	0.71	-0.1
4,784,573	+		EFB2_04553	0.71	-0.2
4,784,573	+		EFB2_04553	0.71	+1.2
4,784,573	+		EFB2_04553	0.71	+0.5
4,784,573	+		EFB2_04553	0.71	-3.9
4,784,573	+		EFB2_04553	0.71	-2.7
4,784,573	+		EFB2_04553	0.71	-1.1
4,784,573	+		EFB2_04553	0.71	+1.3
4,784,573	+		EFB2_04553	0.71	+1.4
4,784,573	+		EFB2_04553	0.71	+0.3
4,784,573	+		EFB2_04553	0.71	+1.0
4,784,573	+		EFB2_04553	0.71	-0.4
4,784,573	+		EFB2_04553	0.71	+0.2
4,784,573	+		EFB2_04553	0.71	+2.2
4,784,573	+		EFB2_04553	0.71	+0.0
4,784,573	+		EFB2_04553	0.71	+0.5
4,784,573	+		EFB2_04553	0.71	-0.5
4,784,573	+		EFB2_04553	0.71	+1.5
4,784,573	+		EFB2_04553	0.71	-2.3
4,784,573	+		EFB2_04553	0.71	+1.7
4,784,573	+		EFB2_04553	0.71	+2.1
4,784,573	+		EFB2_04553	0.71	+0.6
4,784,573	+		EFB2_04553	0.71	-2.6
4,784,573	+		EFB2_04553	0.71	+1.2
4,784,573	+		EFB2_04553	0.71	+1.3
4,784,573	+		EFB2_04553	0.71	-2.5
4,784,573	+		EFB2_04553	0.71	-1.1
4,784,573	+		EFB2_04553	0.71	-0.7
4,784,574	-		EFB2_04553	0.71	-0.2
4,784,574	-		EFB2_04553	0.71	-0.9
4,784,574	-		EFB2_04553	0.71	-1.1
4,784,574	-		EFB2_04553	0.71	-1.6
4,784,574	-		EFB2_04553	0.71	-0.7
4,784,574	-		EFB2_04553	0.71	-0.2
4,784,574	-		EFB2_04553	0.71	+0.8
4,784,574	-		EFB2_04553	0.71	-0.9
4,784,574	-		EFB2_04553	0.71	-0.4
4,784,574	-		EFB2_04553	0.71	-1.9
4,784,574	-		EFB2_04553	0.71	+2.2
4,784,574	-		EFB2_04553	0.71	+0.6
4,784,574	-		EFB2_04553	0.71	-2.0
4,784,574	-		EFB2_04553	0.71	-0.2
4,784,574	-		EFB2_04553	0.71	+1.1
4,784,574	-		EFB2_04553	0.71	+1.1
4,784,574	-		EFB2_04553	0.71	-1.3
4,784,574	-		EFB2_04553	0.71	-1.8
4,784,574	-		EFB2_04553	0.71	+0.3
4,784,574	-		EFB2_04553	0.71	+0.1
4,784,574	-		EFB2_04553	0.71	+0.7
4,784,574	-		EFB2_04553	0.71	-1.4
4,784,574	-		EFB2_04553	0.71	-2.2
4,784,574	-		EFB2_04553	0.71	+0.2
4,784,574	-		EFB2_04553	0.71	+0.8
4,784,574	-		EFB2_04553	0.71	+1.4
4,784,574	-		EFB2_04553	0.71	-1.2
4,784,574	-		EFB2_04553	0.71	-0.4
4,784,577	+		EFB2_04553	0.71	-1.2
4,784,577	+		EFB2_04553	0.71	-1.0
4,784,577	+		EFB2_04553	0.71	-3.0
4,784,577	+		EFB2_04553	0.71	+0.5
4,784,577	+		EFB2_04553	0.71	+0.1
4,784,577	+		EFB2_04553	0.71	+1.2
4,784,577	+		EFB2_04553	0.71	-2.4
4,784,577	+		EFB2_04553	0.71	+0.2
4,784,577	+		EFB2_04553	0.71	+0.5
4,784,577	+		EFB2_04553	0.71	+1.1
4,784,577	+		EFB2_04553	0.71	-0.5
4,784,577	+		EFB2_04553	0.71	-0.5
4,784,577	+		EFB2_04553	0.71	-2.2
4,784,577	+		EFB2_04553	0.71	-1.1
4,784,577	+		EFB2_04553	0.71	-0.5
4,784,577	+		EFB2_04553	0.71	+0.2
4,784,577	+		EFB2_04553	0.71	+0.1
4,784,577	+		EFB2_04553	0.71	-1.1
4,784,577	+		EFB2_04553	0.71	+0.5
4,784,577	+		EFB2_04553	0.71	-0.7
4,784,577	+		EFB2_04553	0.71	-1.0
4,784,577	+		EFB2_04553	0.71	-1.2
4,784,577	+		EFB2_04553	0.71	-1.1
4,784,577	+		EFB2_04553	0.71	+1.8
4,784,577	+		EFB2_04553	0.71	+1.3
4,784,577	+		EFB2_04553	0.71	+0.6
4,784,578	-		EFB2_04553	0.71	-2.3
4,784,578	-		EFB2_04553	0.71	-0.4
4,784,578	-		EFB2_04553	0.71	-0.8
4,784,578	-		EFB2_04553	0.71	+0.9
4,784,578	-		EFB2_04553	0.71	+0.4
4,784,578	-		EFB2_04553	0.71	+0.0
4,784,578	-		EFB2_04553	0.71	-1.6
4,784,578	-		EFB2_04553	0.71	+0.1
4,784,578	-		EFB2_04553	0.71	+1.3
4,784,578	-		EFB2_04553	0.71	+0.4
4,784,578	-		EFB2_04553	0.71	-2.0
4,784,578	-		EFB2_04553	0.71	+0.8
4,784,578	-		EFB2_04553	0.71	-3.0
4,784,578	-		EFB2_04553	0.71	+0.7
4,784,578	-		EFB2_04553	0.71	+0.9
4,784,578	-		EFB2_04553	0.71	-0.7
4,784,578	-		EFB2_04553	0.71	-0.4
4,784,578	-		EFB2_04553	0.71	+1.2
4,784,578	-		EFB2_04553	0.71	-0.8
4,784,578	-		EFB2_04553	0.71	+0.1
4,784,578	-		EFB2_04553	0.71	-1.1
4,784,578	-		EFB2_04553	0.71	+0.8
4,784,632	-		EFB2_04553	0.74	-0.0
4,784,672	+		EFB2_04553	0.76	+0.9
4,784,672	+		EFB2_04553	0.76	+1.7
4,784,672	+		EFB2_04553	0.76	-0.2
4,784,672	+		EFB2_04553	0.76	-1.9
4,784,672	+		EFB2_04553	0.76	-0.1
4,784,673	-		EFB2_04553	0.76	+0.2
4,784,673	-		EFB2_04553	0.76	+1.6
4,784,673	-		EFB2_04553	0.76	+0.2
4,784,673	-		EFB2_04553	0.76	-2.4
4,784,673	-		EFB2_04553	0.76	+1.7
4,784,673	-		EFB2_04553	0.76	+0.4
4,784,673	-		EFB2_04553	0.76	-0.3
4,784,696	+		EFB2_04553	0.77	+1.5
4,784,697	-		EFB2_04553	0.77	+1.3
4,784,697	-		EFB2_04553	0.77	+1.5
4,784,697	-		EFB2_04553	0.77	-2.0
4,784,697	-		EFB2_04553	0.77	-2.0
4,784,703	+		EFB2_04553	0.78	+1.6
4,784,703	+		EFB2_04553	0.78	+0.5
4,784,703	+		EFB2_04553	0.78	+0.4
4,784,703	+		EFB2_04553	0.78	-0.3
4,784,703	+		EFB2_04553	0.78	+0.2
4,784,703	+		EFB2_04553	0.78	-3.3
4,784,703	+		EFB2_04553	0.78	-1.6
4,784,703	+		EFB2_04553	0.78	-0.6
4,784,703	+		EFB2_04553	0.78	+2.2
4,784,703	+		EFB2_04553	0.78	+0.4
4,784,703	+		EFB2_04553	0.78	+0.5
4,784,703	+		EFB2_04553	0.78	+0.6
4,784,703	+		EFB2_04553	0.78	-0.4
4,784,703	+		EFB2_04553	0.78	+0.6
4,784,704	-		EFB2_04553	0.78	+0.9
4,784,704	-		EFB2_04553	0.78	-0.6
4,784,704	-		EFB2_04553	0.78	-0.7
4,784,704	-		EFB2_04553	0.78	-0.4
4,784,704	-		EFB2_04553	0.78	+0.0
4,784,704	-		EFB2_04553	0.78	+1.4
4,784,704	-		EFB2_04553	0.78	+0.1
4,784,736	+		EFB2_04553	0.79	-1.7
4,784,736	+		EFB2_04553	0.79	+0.4
4,784,736	+		EFB2_04553	0.79	-0.0
4,784,736	+		EFB2_04553	0.79	+1.2
4,784,736	+		EFB2_04553	0.79	-0.1
4,784,736	+		EFB2_04553	0.79	+0.4
4,784,736	+		EFB2_04553	0.79	+1.2
4,784,736	+		EFB2_04553	0.79	+0.3
4,784,736	+		EFB2_04553	0.79	+2.3
4,784,736	+		EFB2_04553	0.79	+3.7
4,784,736	+		EFB2_04553	0.79	+0.7
4,784,736	+		EFB2_04553	0.79	+0.9
4,784,736	+		EFB2_04553	0.79	-1.7
4,784,736	+		EFB2_04553	0.79	-2.7
4,784,736	+		EFB2_04553	0.79	+0.9
4,784,736	+		EFB2_04553	0.79	+0.2
4,784,737	-		EFB2_04553	0.79	-0.9
4,784,737	-		EFB2_04553	0.79	+0.1
4,784,737	-		EFB2_04553	0.79	+0.6
4,784,737	-		EFB2_04553	0.79	-0.2
4,784,737	-		EFB2_04553	0.79	-0.2
4,784,737	-		EFB2_04553	0.79	-0.2
4,784,737	-		EFB2_04553	0.79	+2.6
4,784,737	-		EFB2_04553	0.79	+0.9
4,784,737	-		EFB2_04553	0.79	+0.6
4,784,737	-		EFB2_04553	0.79	-0.5
4,784,737	-		EFB2_04553	0.79	-0.3
4,784,737	-		EFB2_04553	0.79	-2.6
4,784,787	+		EFB2_04553	0.82	+0.6
4,784,787	+		EFB2_04553	0.82	+0.4
4,784,788	-		EFB2_04553	0.82	-1.8
4,784,788	-		EFB2_04553	0.82	-1.9
4,784,788	-		EFB2_04553	0.82	-1.1
4,784,802	+		EFB2_04553	0.82	-1.6
4,784,802	+		EFB2_04553	0.82	+0.9
4,784,802	+		EFB2_04553	0.82	+2.5
4,784,803	-		EFB2_04553	0.82	-1.1
4,784,803	-		EFB2_04553	0.82	+1.3
4,784,803	-		EFB2_04553	0.82	-1.1
4,784,873	+		EFB2_04553	0.86	+1.6
4,784,873	+		EFB2_04553	0.86	+0.4
4,784,873	+		EFB2_04553	0.86	-0.1
4,784,874	-		EFB2_04553	0.86	-0.1
4,784,885	+		EFB2_04553	0.86	-0.9
4,784,885	+		EFB2_04553	0.86	+0.2
4,784,885	+		EFB2_04553	0.86	+1.4
4,784,885	+		EFB2_04553	0.86	+0.2
4,784,885	+		EFB2_04553	0.86	+0.5
4,784,885	+		EFB2_04553	0.86	-0.6
4,784,886	-		EFB2_04553	0.86	+0.3
4,784,886	-		EFB2_04553	0.86	+1.6
4,784,893	+		EFB2_04553	0.87	-0.7
4,784,893	+		EFB2_04553	0.87	-0.5
4,784,893	+		EFB2_04553	0.87	-0.1
4,784,893	+		EFB2_04553	0.87	+0.2
4,784,893	+		EFB2_04553	0.87	-1.7
4,784,893	+		EFB2_04553	0.87	+0.1
4,784,893	+		EFB2_04553	0.87	+0.3
4,784,893	+		EFB2_04553	0.87	-1.8
4,784,893	+		EFB2_04553	0.87	+0.1
4,784,893	+		EFB2_04553	0.87	-0.9
4,784,893	+		EFB2_04553	0.87	-1.8
4,784,893	+		EFB2_04553	0.87	+3.3
4,784,893	+		EFB2_04553	0.87	-0.2
4,784,894	-		EFB2_04553	0.87	-3.0
4,784,894	-		EFB2_04553	0.87	+1.2
4,784,894	-		EFB2_04553	0.87	-2.1
4,784,894	-		EFB2_04553	0.87	+0.8
4,784,894	-		EFB2_04553	0.87	+1.1
4,784,894	-		EFB2_04553	0.87	-3.0
4,784,894	-		EFB2_04553	0.87	-1.1
4,784,894	-		EFB2_04553	0.87	-2.8
4,784,894	-		EFB2_04553	0.87	-0.3
4,784,894	-		EFB2_04553	0.87	-1.2
4,784,894	-		EFB2_04553	0.87	-0.2
4,784,894	-		EFB2_04553	0.87	+1.2
4,784,894	-		EFB2_04553	0.87	-0.6
4,784,894	-		EFB2_04553	0.87	-0.3
4,784,894	-		EFB2_04553	0.87	-0.2
4,784,894	-		EFB2_04553	0.87	-0.3
4,784,894	-		EFB2_04553	0.87	+0.3
4,784,931	+		EFB2_04553	0.89	+0.4
4,784,931	+		EFB2_04553	0.89	-1.1
4,784,931	+		EFB2_04553	0.89	-0.8
4,784,931	+		EFB2_04553	0.89	-0.4
4,784,931	+		EFB2_04553	0.89	-0.4
4,784,931	+		EFB2_04553	0.89	+0.3
4,784,932	-		EFB2_04553	0.89	+0.1
4,784,932	-		EFB2_04553	0.89	-1.4
4,784,932	-		EFB2_04553	0.89	-0.2
4,784,932	-		EFB2_04553	0.89	+0.7
4,784,932	-		EFB2_04553	0.89	+1.5
4,784,935	+		EFB2_04553	0.89	-0.3
4,784,935	+		EFB2_04553	0.89	+0.8
4,784,935	+		EFB2_04553	0.89	+1.0
4,784,935	+		EFB2_04553	0.89	-1.5
4,784,935	+		EFB2_04553	0.89	+0.4
4,784,935	+		EFB2_04553	0.89	+0.1
4,784,935	+		EFB2_04553	0.89	-0.6
4,784,935	+		EFB2_04553	0.89	+0.9
4,784,935	+		EFB2_04553	0.89	-2.1
4,784,935	+		EFB2_04553	0.89	+1.3
4,784,935	+		EFB2_04553	0.89	-0.2
4,784,935	+		EFB2_04553	0.89	+1.6
4,784,935	+		EFB2_04553	0.89	-0.7
4,784,935	+		EFB2_04553	0.89	+0.4
4,784,935	+		EFB2_04553	0.89	+2.1
4,784,935	+		EFB2_04553	0.89	-0.4
4,784,935	+		EFB2_04553	0.89	-0.2
4,784,935	+		EFB2_04553	0.89	+0.2
4,784,935	+		EFB2_04553	0.89	-0.8
4,784,935	+		EFB2_04553	0.89	+0.7
4,784,935	+		EFB2_04553	0.89	-1.1
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4,787,125	-		EFB2_04556	0.33	+1.5
4,787,125	-		EFB2_04556	0.33	-0.1
4,787,125	-		EFB2_04556	0.33	-0.2
4,787,145	+		EFB2_04556	0.35	+1.3
4,787,145	+		EFB2_04556	0.35	-0.0
4,787,146	-		EFB2_04556	0.36	+1.2
4,787,146	-		EFB2_04556	0.36	-2.7
4,787,146	-		EFB2_04556	0.36	+0.2
4,787,146	-		EFB2_04556	0.36	+0.3
4,787,146	-		EFB2_04556	0.36	+1.5
4,787,195	+		EFB2_04556	0.40	-0.8
4,787,195	+		EFB2_04556	0.40	-2.4
4,787,195	+		EFB2_04556	0.40	+1.5
4,787,196	-		EFB2_04556	0.41	-1.3
4,787,196	-		EFB2_04556	0.41	-3.2
4,787,196	-		EFB2_04556	0.41	+0.8
4,787,196	-		EFB2_04556	0.41	-1.2
4,787,208	-		EFB2_04556	0.42	+1.6
4,787,246	-		EFB2_04556	0.46	+0.5