Strain Fitness in Escherichia fergusonii Becca around EFB2_04091

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
4,296,431	+		EFB2_04090	0.23	-0.2
4,296,432	-		EFB2_04090	0.23	+0.1
4,296,447	+		EFB2_04090	0.24	-1.2
4,296,447	+		EFB2_04090	0.24	-2.2
4,296,447	+		EFB2_04090	0.24	+0.7
4,296,447	+		EFB2_04090	0.24	+0.7
4,296,447	+		EFB2_04090	0.24	+0.2
4,296,447	+		EFB2_04090	0.24	+1.2
4,296,447	+		EFB2_04090	0.24	+0.3
4,296,448	-		EFB2_04090	0.24	-1.4
4,296,485	+		EFB2_04090	0.28	+0.0
4,296,485	+		EFB2_04090	0.28	+2.0
4,296,485	+		EFB2_04090	0.28	-2.7
4,296,486	-		EFB2_04090	0.28	-3.3
4,296,486	-		EFB2_04090	0.28	-0.1
4,296,503	+		EFB2_04090	0.30	+0.5
4,296,503	+		EFB2_04090	0.30	-0.2
4,296,504	-		EFB2_04090	0.30	-1.7
4,296,504	-		EFB2_04090	0.30	+1.8
4,296,504	-		EFB2_04090	0.30	+0.2
4,296,504	-		EFB2_04090	0.30	-0.2
4,296,591	+		EFB2_04090	0.38	+1.7
4,296,591	+		EFB2_04090	0.38	+0.5
4,296,591	+		EFB2_04090	0.38	-0.0
4,296,592	-		EFB2_04090	0.39	+1.6
4,296,592	-		EFB2_04090	0.39	+0.5
4,296,597	+		EFB2_04090	0.39	+2.9
4,296,597	+		EFB2_04090	0.39	+0.9
4,296,597	+		EFB2_04090	0.39	+1.1
4,296,597	+		EFB2_04090	0.39	+1.1
4,296,598	-		EFB2_04090	0.39	-1.2
4,296,598	-		EFB2_04090	0.39	-0.3
4,296,598	-		EFB2_04090	0.39	-0.5
4,296,771	-		EFB2_04090	0.56	-0.5
4,296,771	-		EFB2_04090	0.56	+0.5
4,296,771	-		EFB2_04090	0.56	+0.3
4,296,773	+		EFB2_04090	0.56	+0.2
4,296,773	+		EFB2_04090	0.56	-0.5
4,296,773	+		EFB2_04090	0.56	-2.7
4,296,853	+		EFB2_04090	0.64	-2.8
4,296,854	-		EFB2_04090	0.64	-0.8
4,296,854	-		EFB2_04090	0.64	-2.4
4,296,854	-		EFB2_04090	0.64	-1.7
4,296,854	-		EFB2_04090	0.64	+0.9
4,296,861	-		EFB2_04090	0.65	-2.8
4,296,915	-		EFB2_04090	0.70	+0.4
4,296,955	+		EFB2_04090	0.74	-0.3
4,296,955	+		EFB2_04090	0.74	-0.8
4,296,955	+		EFB2_04090	0.74	+2.4
4,296,955	+		EFB2_04090	0.74	+1.6
4,296,956	-		EFB2_04090	0.74	-0.8
4,296,956	-		EFB2_04090	0.74	+2.3
4,296,956	-		EFB2_04090	0.74	-0.5
4,296,970	-		EFB2_04090	0.75	-1.5
4,297,029	+		EFB2_04090	0.81	-0.9
4,297,029	+		EFB2_04090	0.81	+2.0
4,297,029	+		EFB2_04090	0.81	+0.9
4,297,029	+		EFB2_04090	0.81	+2.5
4,297,030	-		EFB2_04090	0.81	+1.0
4,297,055	-		EFB2_04090	0.84	-2.6
4,297,055	-		EFB2_04090	0.84	+0.5
4,297,156	-				+0.6
4,297,215	-				-2.0
4,297,248	+				-0.4
4,297,248	+				-0.2
4,297,248	+				-3.9
4,297,248	+				-0.2
4,297,248	+				+0.7
4,297,249	-				-0.3
4,297,252	+				-1.4
4,297,253	-				-3.5
4,297,323	+				-1.4
4,297,324	-				+1.1
4,297,336	-				-3.0
4,297,336	-				+1.0
4,297,336	-				-1.9
4,297,358	+				-1.4
4,297,359	-				+0.3
4,297,359	-				-1.9
4,297,359	-				+3.4
4,297,394	+				+0.7
4,297,395	-				+0.3
4,297,412	+				-0.3
4,297,412	+				-1.2
4,297,412	+				+1.5
4,297,413	-				+0.2
4,297,427	+				-2.7
4,297,428	-				+0.5
4,297,428	-				+0.7
4,297,428	-				+1.2
4,297,470	+		EFB2_04091	0.12	-0.1
4,297,470	+		EFB2_04091	0.12	+0.3
4,297,470	+		EFB2_04091	0.12	-2.1
4,297,470	+		EFB2_04091	0.12	+1.7
4,297,470	+		EFB2_04091	0.12	-0.3
4,297,471	-		EFB2_04091	0.12	+0.9
4,297,471	-		EFB2_04091	0.12	+1.0
4,297,471	-		EFB2_04091	0.12	-0.3
4,297,487	+		EFB2_04091	0.14	-1.0
4,297,487	+		EFB2_04091	0.14	-0.2
4,297,487	+		EFB2_04091	0.14	+0.5
4,297,487	+		EFB2_04091	0.14	-0.4
4,297,487	+		EFB2_04091	0.14	-1.7
4,297,488	-		EFB2_04091	0.14	-1.5
4,297,488	-		EFB2_04091	0.14	-0.9
4,297,488	-		EFB2_04091	0.14	+1.5
4,297,488	-		EFB2_04091	0.14	-1.6
4,297,499	+		EFB2_04091	0.15	-0.4
4,297,499	+		EFB2_04091	0.15	+2.2
4,297,499	+		EFB2_04091	0.15	+0.1
4,297,499	+		EFB2_04091	0.15	+1.0
4,297,499	+		EFB2_04091	0.15	+1.3
4,297,500	-		EFB2_04091	0.15	-0.8
4,297,500	-		EFB2_04091	0.15	-0.2
4,297,513	+		EFB2_04091	0.17	-2.9
4,297,531	+		EFB2_04091	0.19	+2.5
4,297,531	+		EFB2_04091	0.19	-0.9
4,297,531	+		EFB2_04091	0.19	+1.1
4,297,531	+		EFB2_04091	0.19	+0.0
4,297,531	+		EFB2_04091	0.19	+1.1
4,297,551	+		EFB2_04091	0.21	+0.5
4,297,551	+		EFB2_04091	0.21	-2.1
4,297,551	+		EFB2_04091	0.21	-0.4
4,297,551	+		EFB2_04091	0.21	+1.5
4,297,551	+		EFB2_04091	0.21	+0.3
4,297,551	+		EFB2_04091	0.21	+0.3
4,297,551	+		EFB2_04091	0.21	-0.1
4,297,551	+		EFB2_04091	0.21	+1.3
4,297,551	+		EFB2_04091	0.21	+0.9
4,297,552	-		EFB2_04091	0.21	-0.8
4,297,552	-		EFB2_04091	0.21	+0.3
4,297,552	-		EFB2_04091	0.21	+1.0
4,297,552	-		EFB2_04091	0.21	+1.6
4,297,552	-		EFB2_04091	0.21	+0.3
4,297,552	-		EFB2_04091	0.21	-0.2
4,297,552	-		EFB2_04091	0.21	-1.5
4,297,552	-		EFB2_04091	0.21	-0.7
4,297,552	-		EFB2_04091	0.21	+0.3
4,297,552	-		EFB2_04091	0.21	+1.9
4,297,552	-		EFB2_04091	0.21	+0.2
4,297,552	-		EFB2_04091	0.21	+0.6
4,297,557	-		EFB2_04091	0.22	+0.8
4,297,557	-		EFB2_04091	0.22	+1.1
4,297,557	-		EFB2_04091	0.22	+1.1
4,297,557	-		EFB2_04091	0.22	+0.2
4,297,557	-		EFB2_04091	0.22	-3.0
4,297,565	+		EFB2_04091	0.23	-1.4
4,297,566	-		EFB2_04091	0.23	+0.6
4,297,595	+		EFB2_04091	0.26	-0.3
4,297,595	+		EFB2_04091	0.26	-1.0
4,297,595	+		EFB2_04091	0.26	-2.2
4,297,595	+		EFB2_04091	0.26	+0.9
4,297,598	+		EFB2_04091	0.26	-1.8
4,297,598	+		EFB2_04091	0.26	+0.1
4,297,599	-		EFB2_04091	0.26	+1.1
4,297,599	-		EFB2_04091	0.26	+0.7
4,297,599	-		EFB2_04091	0.26	-1.7
4,297,599	-		EFB2_04091	0.26	-0.8
4,297,654	+		EFB2_04091	0.32	+1.1
4,297,654	+		EFB2_04091	0.32	+1.3
4,297,655	-		EFB2_04091	0.32	+1.2
4,297,669	+		EFB2_04091	0.34	-2.4
4,297,670	-		EFB2_04091	0.34	+0.1
4,297,732	+		EFB2_04091	0.41	-0.7
4,297,732	+		EFB2_04091	0.41	+0.4
4,297,732	+		EFB2_04091	0.41	+0.4
4,297,732	+		EFB2_04091	0.41	-1.5
4,297,733	-		EFB2_04091	0.41	-1.8
4,297,733	-		EFB2_04091	0.41	-3.0
4,297,735	+		EFB2_04091	0.41	-2.0
4,297,743	+		EFB2_04091	0.42	-0.2
4,297,743	+		EFB2_04091	0.42	+1.3
4,297,743	+		EFB2_04091	0.42	+2.0
4,297,744	-		EFB2_04091	0.42	-1.5
4,297,766	+		EFB2_04091	0.44	+1.3
4,297,766	+		EFB2_04091	0.44	-1.3
4,297,767	-		EFB2_04091	0.45	-1.3
4,297,767	-		EFB2_04091	0.45	+0.8
4,297,767	-		EFB2_04091	0.45	+1.6
4,297,772	+		EFB2_04091	0.45	+1.0
4,297,824	+		EFB2_04091	0.51	+0.4
4,297,824	+		EFB2_04091	0.51	+0.8
4,297,847	-		EFB2_04091	0.53	-0.3
4,297,847	-		EFB2_04091	0.53	-0.7
4,297,949	-		EFB2_04091	0.64	+1.2
4,297,970	+		EFB2_04091	0.67	-0.7
4,297,970	+		EFB2_04091	0.67	-0.7
4,297,970	+		EFB2_04091	0.67	+0.3
4,297,970	+		EFB2_04091	0.67	+0.9
4,297,971	-		EFB2_04091	0.67	-0.0
4,297,971	-		EFB2_04091	0.67	-0.6
4,297,971	-		EFB2_04091	0.67	+1.5
4,297,971	-		EFB2_04091	0.67	+1.3
4,297,971	-		EFB2_04091	0.67	+1.8
4,298,014	+		EFB2_04091	0.72	-2.7
4,298,088	+		EFB2_04091	0.80	+1.3
4,298,111	+		EFB2_04091	0.82	+0.5
4,298,111	+		EFB2_04091	0.82	+2.1
4,298,111	+		EFB2_04091	0.82	+2.2
4,298,111	+		EFB2_04091	0.82	+0.5
4,298,111	+		EFB2_04091	0.82	-0.3
4,298,111	+		EFB2_04091	0.82	-0.5
4,298,111	+		EFB2_04091	0.82	-2.9
4,298,112	-		EFB2_04091	0.82	-0.7
4,298,123	+		EFB2_04091	0.83	-0.4
4,298,124	-		EFB2_04091	0.84	+0.6
4,298,124	-		EFB2_04091	0.84	-2.4
4,298,124	-		EFB2_04091	0.84	+0.9
4,298,124	-		EFB2_04091	0.84	-2.4
4,298,124	-		EFB2_04091	0.84	+0.1
4,298,124	-		EFB2_04091	0.84	+0.3
4,298,144	+		EFB2_04091	0.86	+1.2
4,298,144	+		EFB2_04091	0.86	+0.3
4,298,144	+		EFB2_04091	0.86	-3.6
4,298,144	+		EFB2_04091	0.86	-0.6
4,298,144	+		EFB2_04091	0.86	+1.2
4,298,144	+		EFB2_04091	0.86	-3.3
4,298,144	+		EFB2_04091	0.86	+1.5
4,298,144	+		EFB2_04091	0.86	+0.2
4,298,144	+		EFB2_04091	0.86	-1.9
4,298,144	+		EFB2_04091	0.86	-0.2
4,298,144	+		EFB2_04091	0.86	-0.5
4,298,144	+		EFB2_04091	0.86	-1.0
4,298,144	+		EFB2_04091	0.86	+1.1
4,298,144	+		EFB2_04091	0.86	+1.1
4,298,144	+		EFB2_04091	0.86	+1.1
4,298,145	-		EFB2_04091	0.86	-0.2
4,298,145	-		EFB2_04091	0.86	+0.3
4,298,145	-		EFB2_04091	0.86	-2.6
4,298,145	-		EFB2_04091	0.86	+0.8
4,298,145	-		EFB2_04091	0.86	-0.1
4,298,145	-		EFB2_04091	0.86	-0.3
4,298,145	-		EFB2_04091	0.86	-1.9
4,298,145	-		EFB2_04091	0.86	+2.2
4,298,145	-		EFB2_04091	0.86	+0.7
4,298,145	-		EFB2_04091	0.86	-1.0
4,298,145	-		EFB2_04091	0.86	+0.7
4,298,145	-		EFB2_04091	0.86	-0.0
4,298,145	-		EFB2_04091	0.86	+0.4
4,298,222	+				-2.0
4,298,222	+				-0.0
4,298,262	+				+0.2
4,298,271	+				+1.1
4,298,271	+				+0.4
4,298,271	+				-2.0
4,298,272	-				-2.5
4,298,272	-				+1.6
4,298,272	-				-1.1
4,298,272	-				-1.3
4,298,272	-				-1.6
4,298,272	-				-0.3
4,298,275	+				-0.6
4,298,282	+				-0.7
4,298,282	+				-0.9
4,298,282	+				+0.5
4,298,296	+				+0.1
4,298,297	-				+1.3
4,298,326	+				+0.3
4,298,326	+				+0.0
4,298,326	+				-0.1
4,298,327	-				-0.0
4,298,327	-				+1.8
4,298,331	-				+1.4
4,298,331	-				+0.5
4,298,348	+				-0.9
4,298,348	+				+0.2
4,298,348	+				+0.2
4,298,348	+				+1.7
4,298,349	-				-2.1
4,298,352	+				+0.9
4,298,352	+				+0.7
4,298,352	+				+0.7
4,298,352	+				-0.1
4,298,352	+				+0.6
4,298,353	-				+0.4
4,298,353	-				+2.5
4,298,353	-				+0.5
4,298,396	+				-1.5
4,298,439	+				-3.0
4,298,439	+				+0.6
4,298,475	-				-2.7
4,298,529	+				+0.5
4,298,529	+				+1.3
4,298,573	+				-0.5
4,298,684	+		EFB2_04092	0.14	-3.7
4,298,708	+		EFB2_04092	0.16	+0.3
4,298,708	+		EFB2_04092	0.16	-3.1
4,298,708	+		EFB2_04092	0.16	+0.5
4,298,708	+		EFB2_04092	0.16	-0.3
4,298,709	-		EFB2_04092	0.16	-3.2
4,298,709	-		EFB2_04092	0.16	-0.1
4,298,786	+		EFB2_04092	0.22	-0.4
4,298,786	+		EFB2_04092	0.22	+2.5
4,298,787	-		EFB2_04092	0.22	-1.6
4,298,797	-		EFB2_04092	0.23	+0.1
4,298,877	+		EFB2_04092	0.29	+0.6
4,298,878	-		EFB2_04092	0.29	+0.9
4,298,878	-		EFB2_04092	0.29	-0.0
4,298,878	-		EFB2_04092	0.29	+0.1
4,298,942	+		EFB2_04092	0.33	-0.6
4,298,943	-		EFB2_04092	0.33	-3.0
4,298,943	-		EFB2_04092	0.33	-2.9
4,299,012	+		EFB2_04092	0.38	-0.5
4,299,012	+		EFB2_04092	0.38	+2.5
4,299,012	+		EFB2_04092	0.38	-1.0
4,299,012	+		EFB2_04092	0.38	+0.5
4,299,013	-		EFB2_04092	0.39	+1.3
4,299,013	-		EFB2_04092	0.39	+1.2
4,299,013	-		EFB2_04092	0.39	-2.0
4,299,029	+		EFB2_04092	0.40	-0.8
4,299,084	+		EFB2_04092	0.44	+0.9
4,299,084	+		EFB2_04092	0.44	-0.2
4,299,084	+		EFB2_04092	0.44	+0.8
4,299,084	+		EFB2_04092	0.44	+2.7
4,299,085	-		EFB2_04092	0.44	-1.5
4,299,085	-		EFB2_04092	0.44	+2.2
4,299,085	-		EFB2_04092	0.44	+1.8
4,299,087	+		EFB2_04092	0.44	-0.6
4,299,087	+		EFB2_04092	0.44	-2.4
4,299,087	+		EFB2_04092	0.44	+0.8
4,299,088	-		EFB2_04092	0.44	+1.3
4,299,088	-		EFB2_04092	0.44	-0.4
4,299,127	+		EFB2_04092	0.47	+0.1
4,299,127	+		EFB2_04092	0.47	+2.2
4,299,127	+		EFB2_04092	0.47	+0.6
4,299,127	+		EFB2_04092	0.47	-0.1
4,299,127	+		EFB2_04092	0.47	-1.1
4,299,127	+		EFB2_04092	0.47	+2.2
4,299,127	+		EFB2_04092	0.47	-3.8
4,299,127	+		EFB2_04092	0.47	-1.2
4,299,127	+		EFB2_04092	0.47	+0.4
4,299,127	+		EFB2_04092	0.47	+1.0
4,299,127	+		EFB2_04092	0.47	-0.1
4,299,127	+		EFB2_04092	0.47	+0.1
4,299,127	+		EFB2_04092	0.47	-3.7
4,299,127	+		EFB2_04092	0.47	-0.4
4,299,127	+		EFB2_04092	0.47	-0.9
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