Strain Fitness in Escherichia fergusonii Becca around EFB2_04079

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
4,286,043	+		EFB2_04076	0.45	-0.9
4,286,044	-		EFB2_04076	0.45	+0.0
4,286,059	+		EFB2_04076	0.47	+0.1
4,286,059	+		EFB2_04076	0.47	+0.5
4,286,059	+		EFB2_04076	0.47	-1.9
4,286,059	+		EFB2_04076	0.47	+0.2
4,286,059	+		EFB2_04076	0.47	+1.4
4,286,150	+		EFB2_04076	0.56	+1.3
4,286,150	+		EFB2_04076	0.56	+1.9
4,286,151	-		EFB2_04076	0.56	+0.9
4,286,151	-		EFB2_04076	0.56	+1.5
4,286,170	-		EFB2_04076	0.58	+1.3
4,286,170	-		EFB2_04076	0.58	-0.0
4,286,170	-		EFB2_04076	0.58	-0.9
4,286,170	-		EFB2_04076	0.58	-0.1
4,286,273	+		EFB2_04076	0.68	+0.1
4,286,273	+		EFB2_04076	0.68	+0.5
4,286,332	-		EFB2_04076	0.73	+0.4
4,286,364	+		EFB2_04076	0.76	-1.1
4,286,364	+		EFB2_04076	0.76	-1.1
4,286,365	-		EFB2_04076	0.76	-0.0
4,286,369	+		EFB2_04076	0.77	-2.7
4,286,369	+		EFB2_04076	0.77	-0.4
4,286,369	+		EFB2_04076	0.77	-1.9
4,286,369	+		EFB2_04076	0.77	-2.6
4,286,370	-		EFB2_04076	0.77	-2.2
4,286,370	-		EFB2_04076	0.77	-1.7
4,286,370	-		EFB2_04076	0.77	+0.4
4,286,370	-		EFB2_04076	0.77	-2.0
4,286,370	-		EFB2_04076	0.77	+1.7
4,286,370	-		EFB2_04076	0.77	-0.7
4,286,370	-		EFB2_04076	0.77	-0.2
4,286,370	-		EFB2_04076	0.77	-0.0
4,286,370	-		EFB2_04076	0.77	-0.8
4,286,370	-		EFB2_04076	0.77	-0.4
4,286,480	+		EFB2_04076	0.88	+0.6
4,286,481	-		EFB2_04076	0.88	-0.9
4,286,481	-		EFB2_04076	0.88	+1.1
4,286,481	-		EFB2_04076	0.88	+0.5
4,286,481	-		EFB2_04076	0.88	+1.2
4,286,569	+				+1.2
4,286,569	+				+0.5
4,286,570	-				+1.1
4,286,570	-				-0.2
4,286,570	-				-0.5
4,286,580	+				-0.4
4,286,580	+				-3.7
4,286,580	+				-1.1
4,286,580	+				-2.7
4,286,581	-				+0.1
4,286,581	-				-1.2
4,286,581	-				-0.3
4,286,581	-				+2.1
4,286,609	+				+0.9
4,286,609	+				-3.1
4,286,610	-				-0.1
4,286,610	-				+0.8
4,286,610	-				-0.2
4,286,616	+				+0.5
4,286,616	+				+0.8
4,286,616	+				-0.5
4,286,616	+				-0.1
4,286,616	+				-0.7
4,286,616	+				-3.9
4,286,616	+				+0.3
4,286,616	+				+1.2
4,286,616	+				-2.6
4,286,616	+				-1.8
4,286,616	+				-0.0
4,286,616	+				+0.0
4,286,616	+				+0.1
4,286,616	+				+0.3
4,286,616	+				-0.3
4,286,616	+				-0.1
4,286,616	+				-2.2
4,286,616	+				+0.7
4,286,616	+				-1.7
4,286,616	+				-0.1
4,286,616	+				+0.0
4,286,616	+				-0.5
4,286,616	+				+1.2
4,286,616	+				+0.2
4,286,616	+				+1.0
4,286,616	+				+0.9
4,286,616	+				+0.2
4,286,616	+				+0.2
4,286,616	+				+0.4
4,286,616	+				-2.2
4,286,617	-				-0.4
4,286,617	-				-0.0
4,286,617	-				-1.6
4,286,617	-				+0.7
4,286,617	-				-3.0
4,286,617	-				-1.2
4,286,617	-				+0.9
4,286,617	-				-0.7
4,286,617	-				-0.5
4,286,617	-				-0.1
4,286,617	-				+0.5
4,286,617	-				-0.7
4,286,617	-				+0.2
4,286,617	-				+1.0
4,286,617	-				-2.0
4,286,617	-				+0.3
4,286,617	-				+2.1
4,286,617	-				+1.9
4,286,617	-				-0.5
4,286,617	-				-0.3
4,286,618	+				-1.6
4,286,618	+				+1.5
4,286,618	+				+1.5
4,286,618	+				-0.8
4,286,618	+				+0.6
4,286,618	+				-0.5
4,286,618	+				+0.3
4,286,618	+				-0.3
4,286,618	+				+0.5
4,286,618	+				+0.4
4,286,618	+				+0.1
4,286,618	+				+0.0
4,286,618	+				-3.0
4,286,618	+				-1.5
4,286,618	+				-0.2
4,286,618	+				+0.3
4,286,618	+				-0.6
4,286,618	+				-1.3
4,286,618	+				+0.8
4,286,618	+				-3.4
4,286,618	+				-0.4
4,286,618	+				-0.4
4,286,618	+				-1.0
4,286,618	+				+1.0
4,286,618	+				-0.9
4,286,618	+				+1.0
4,286,618	+				-1.5
4,286,618	+				+0.8
4,286,618	+				+0.8
4,286,618	+				+1.4
4,286,618	+				+0.1
4,286,618	+				-0.8
4,286,618	+				+0.2
4,286,618	+				-3.2
4,286,618	+				-0.2
4,286,618	+				+0.3
4,286,618	+				+2.7
4,286,618	+				-1.4
4,286,618	+				-0.6
4,286,618	+				+0.5
4,286,618	+				+0.8
4,286,618	+				-1.3
4,286,618	+				-1.1
4,286,618	+				-0.1
4,286,618	+				-0.8
4,286,618	+				-1.5
4,286,618	+				+1.1
4,286,618	+				+0.7
4,286,618	+				+0.5
4,286,618	+				+0.6
4,286,619	-				+1.1
4,286,619	-				+0.2
4,286,619	-				+0.7
4,286,619	-				-0.8
4,286,619	-				-0.3
4,286,619	-				-0.3
4,286,619	-				-2.6
4,286,619	-				+1.7
4,286,619	-				+1.0
4,286,619	-				-3.6
4,286,619	-				+1.1
4,286,619	-				+1.3
4,286,619	-				-0.9
4,286,619	-				-0.7
4,286,619	-				-0.2
4,286,619	-				+0.9
4,286,619	-				+0.5
4,286,619	-				-0.0
4,286,619	-				+0.9
4,286,619	-				-2.4
4,286,619	-				-0.3
4,286,619	-				+1.3
4,286,619	-				-0.6
4,286,619	-				-1.4
4,286,619	-				+0.5
4,286,619	-				-1.5
4,286,619	-				-0.2
4,286,619	-				+2.6
4,286,619	-				+0.1
4,286,619	-				-1.7
4,286,619	-				-0.6
4,286,620	+				+0.8
4,286,620	+				-0.4
4,286,620	+				+0.1
4,286,620	+				+1.3
4,286,620	+				-1.0
4,286,620	+				+0.0
4,286,620	+				+0.1
4,286,620	+				+1.1
4,286,621	-				+0.5
4,286,621	-				-0.0
4,286,621	-				+1.4
4,286,621	-				-0.7
4,286,621	-				+1.0
4,286,621	-				-2.6
4,286,630	+				+1.0
4,286,649	+				+0.1
4,286,649	+				-0.2
4,286,649	+				-0.8
4,286,650	-				+0.9
4,286,650	-				+0.5
4,286,650	-				+0.4
4,286,650	-				+0.1
4,286,650	-				-1.8
4,286,658	+				+0.9
4,286,658	+				+1.6
4,286,658	+				-0.6
4,286,658	+				-1.2
4,286,658	+				+0.4
4,286,659	-				+0.5
4,286,659	-				+0.4
4,286,659	-				+0.6
4,286,678	+				+1.7
4,286,679	-				+0.8
4,286,714	+				-0.1
4,286,714	+				+0.2
4,286,714	+				+0.4
4,286,714	+				-2.3
4,286,714	+				+0.1
4,286,714	+				-0.3
4,286,714	+				-1.6
4,286,715	-				+0.5
4,286,715	-				-0.5
4,286,715	-				+0.3
4,286,715	-				+0.9
4,286,715	-				-0.4
4,286,715	-				+0.1
4,286,729	-				-1.2
4,286,729	-				-0.2
4,286,732	+				-0.7
4,286,732	+				-1.4
4,286,732	+				-1.7
4,286,732	+				-1.7
4,286,732	+				+0.4
4,286,732	+				-0.5
4,286,732	+				-0.2
4,286,732	+				-2.4
4,286,732	+				-0.6
4,286,732	+				-1.7
4,286,732	+				-0.7
4,286,732	+				-0.8
4,286,732	+				+1.0
4,286,733	-				-0.4
4,286,733	-				-1.7
4,286,733	-				+1.7
4,286,733	-				-0.6
4,286,733	-				-1.4
4,286,733	-				-0.2
4,286,733	-				+1.0
4,286,733	-				-1.1
4,286,733	-				+1.0
4,286,733	-				+0.7
4,286,733	-				+1.1
4,286,733	-				+0.7
4,286,736	+				-0.3
4,286,736	+				-0.4
4,286,736	+				-1.0
4,286,737	-				-2.9
4,286,737	-				-0.3
4,286,737	-				-2.8
4,286,737	-				+0.4
4,286,760	+				+0.5
4,286,760	+				-1.2
4,286,760	+				+0.1
4,286,760	+				+0.6
4,286,778	+				-1.1
4,286,907	+				+0.1
4,287,031	+				+0.8
4,287,031	+				-1.7
4,287,031	+				+0.8
4,287,132	+				+0.7
4,287,132	+				-0.2
4,287,132	+				-1.3
4,287,132	+				+0.2
4,287,132	+				+1.6
4,287,132	+				-0.2
4,287,132	+				+0.6
4,287,132	+				+2.0
4,287,133	-				+1.0
4,287,138	+				+1.2
4,287,139	-				+2.9
4,287,166	+				-1.3
4,287,166	+				-0.4
4,287,166	+				+0.4
4,287,189	+				-1.8
4,287,190	-				-2.2
4,287,213	-		EFB2_04080	0.19	+0.4
4,287,241	+		EFB2_04080	0.31	+0.3
4,287,241	+		EFB2_04080	0.31	+0.6
4,287,241	+		EFB2_04080	0.31	+0.1
4,287,241	+		EFB2_04080	0.31	+0.4
4,287,242	-		EFB2_04080	0.31	+0.4
4,287,242	-		EFB2_04080	0.31	+0.3
4,287,242	-		EFB2_04080	0.31	+0.8
4,287,242	-		EFB2_04080	0.31	-0.6
4,287,249	+		EFB2_04080	0.34	-0.7
4,287,262	+		EFB2_04080	0.40	-1.8
4,287,262	+		EFB2_04080	0.40	+0.6
4,287,262	+		EFB2_04080	0.40	-0.9
4,287,262	+		EFB2_04080	0.40	+0.5
4,287,263	-		EFB2_04080	0.40	-1.5
4,287,263	-		EFB2_04080	0.40	+0.4
4,287,263	-		EFB2_04080	0.40	-1.3
4,287,282	+		EFB2_04080	0.48	+1.0
4,287,282	+		EFB2_04080	0.48	-0.4
4,287,283	-		EFB2_04080	0.49	-0.8
4,287,283	-		EFB2_04080	0.49	+0.1
4,287,283	-		EFB2_04080	0.49	+0.6
4,287,283	-		EFB2_04080	0.49	+0.6
4,287,325	-		EFB2_04080	0.66	-2.4
4,287,334	+		EFB2_04080	0.70	+1.5
4,287,334	+		EFB2_04080	0.70	-0.6
4,287,334	+		EFB2_04080	0.70	+0.2
4,287,334	+		EFB2_04080	0.70	+0.4
4,287,334	+		EFB2_04080	0.70	-0.3
4,287,334	+		EFB2_04080	0.70	-2.1
4,287,334	+		EFB2_04080	0.70	+1.1
4,287,334	+		EFB2_04080	0.70	-1.7
4,287,334	+		EFB2_04080	0.70	+1.0
4,287,334	+		EFB2_04080	0.70	-0.6
4,287,334	+		EFB2_04080	0.70	+1.2
4,287,334	+		EFB2_04080	0.70	+0.5
4,287,334	+		EFB2_04080	0.70	+0.5
4,287,334	+		EFB2_04080	0.70	+0.5
4,287,335	-		EFB2_04080	0.70	-3.2
4,287,335	-		EFB2_04080	0.70	+1.3
4,287,335	-		EFB2_04080	0.70	+2.8
4,287,335	-		EFB2_04080	0.70	+1.1
4,287,335	-		EFB2_04080	0.70	+1.3
4,287,335	-		EFB2_04080	0.70	-0.5
4,287,335	-		EFB2_04080	0.70	+2.0
4,287,335	-		EFB2_04080	0.70	+0.6
4,287,335	-		EFB2_04080	0.70	-0.1
4,287,335	-		EFB2_04080	0.70	+0.5
4,287,335	-		EFB2_04080	0.70	-3.7
4,287,392	+				-2.5
4,287,392	+				-0.2
4,287,392	+				+0.6
4,287,392	+				-1.5
4,287,392	+				-0.5
4,287,392	+				+0.7
4,287,392	+				+0.4
4,287,392	+				-0.7
4,287,392	+				+1.8
4,287,393	-				+1.7
4,287,393	-				-2.0
4,287,393	-				+1.1
4,287,393	-				+0.7
4,287,393	-				+1.5
4,287,393	-				-0.0
4,287,393	-				+1.1
4,287,393	-				-2.3
4,287,393	-				+0.3
4,287,393	-				-0.4
4,287,393	-				-1.0
4,287,431	+				-1.1
4,287,432	-				+0.6
4,287,436	-				-0.4
4,287,439	-				+1.6
4,287,443	+				+0.1
4,287,444	-				+0.1
4,287,492	+				-1.1
4,287,493	-				-0.8
4,287,516	+				-1.6
4,287,517	-				-1.8
4,287,527	+				+0.4
4,287,527	+				+0.1
4,287,532	+				-0.9
4,287,532	+				+0.3
4,287,532	+				+1.4
4,287,535	+				+0.9
4,287,536	-				+0.0
4,287,536	-				+0.1
4,287,536	-				-2.8
4,287,536	-				-1.8
4,287,536	-				-0.5
4,287,551	+				+0.6
4,287,551	+				+0.5
4,287,569	+				+1.3
4,287,569	+				-0.5
4,287,569	+				+0.1
4,287,570	-				-0.1
4,287,570	-				-0.7
4,287,570	-				+0.4
4,287,580	+				+0.9
4,287,580	+				-1.6
4,287,581	-				+1.2
4,287,581	-				-3.6
4,287,581	-				-0.3
4,287,581	-				-0.6
4,287,581	-				-0.8
4,287,581	-				-0.8
4,287,700	+		EFB2_04081	0.20	+0.9
4,287,700	+		EFB2_04081	0.20	+0.9
4,287,701	-		EFB2_04081	0.20	-0.5
4,287,733	+		EFB2_04081	0.24	+0.2
4,287,733	+		EFB2_04081	0.24	-2.5
4,287,733	+		EFB2_04081	0.24	-1.2
4,287,734	-		EFB2_04081	0.24	-1.6
4,287,734	-		EFB2_04081	0.24	+0.5
4,287,734	-		EFB2_04081	0.24	-0.6
4,287,734	-		EFB2_04081	0.24	-0.3
4,287,734	-		EFB2_04081	0.24	+2.2
4,287,734	-		EFB2_04081	0.24	-0.7
4,287,734	-		EFB2_04081	0.24	-2.3
4,287,734	-		EFB2_04081	0.24	-0.9
4,287,734	-		EFB2_04081	0.24	+0.5
4,287,741	+		EFB2_04081	0.25	+0.9
4,287,741	+		EFB2_04081	0.25	-0.9
4,287,741	+		EFB2_04081	0.25	+0.7
4,287,741	+		EFB2_04081	0.25	-0.2
4,287,742	-		EFB2_04081	0.25	+0.3
4,287,742	-		EFB2_04081	0.25	+1.4
4,287,742	-		EFB2_04081	0.25	-0.2
4,287,750	+		EFB2_04081	0.26	+2.9
4,287,761	+		EFB2_04081	0.27	-2.2
4,287,761	+		EFB2_04081	0.27	+1.7
4,287,761	+		EFB2_04081	0.27	+0.2
4,287,772	+		EFB2_04081	0.29	+0.7
4,287,772	+		EFB2_04081	0.29	-0.7
4,287,772	+		EFB2_04081	0.29	+0.4
4,287,772	+		EFB2_04081	0.29	-0.5
4,287,772	+		EFB2_04081	0.29	-0.9
4,287,772	+		EFB2_04081	0.29	-0.6
4,287,772	+		EFB2_04081	0.29	+1.1
4,287,772	+		EFB2_04081	0.29	+0.3
4,287,772	+		EFB2_04081	0.29	-0.0
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