Strain Fitness in Escherichia fergusonii Becca around EFB2_04027

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
4,233,406	+		EFB2_04026	0.36	-3.0
4,233,406	+		EFB2_04026	0.36	-0.8
4,233,406	+		EFB2_04026	0.36	-0.3
4,233,407	-		EFB2_04026	0.36	+1.1
4,233,407	-		EFB2_04026	0.36	-0.1
4,233,441	-		EFB2_04026	0.38	-3.3
4,233,456	-		EFB2_04026	0.39	-0.2
4,233,468	-		EFB2_04026	0.40	+0.9
4,233,494	+		EFB2_04026	0.42	-2.0
4,233,526	+		EFB2_04026	0.44	-0.9
4,233,526	+		EFB2_04026	0.44	+0.1
4,233,527	-		EFB2_04026	0.44	+0.4
4,233,527	-		EFB2_04026	0.44	-3.0
4,233,541	+		EFB2_04026	0.45	+0.7
4,233,541	+		EFB2_04026	0.45	-0.7
4,233,545	-		EFB2_04026	0.45	+1.9
4,233,545	-		EFB2_04026	0.45	-3.0
4,233,545	-		EFB2_04026	0.45	+0.6
4,233,545	-		EFB2_04026	0.45	+1.0
4,233,545	-		EFB2_04026	0.45	+0.9
4,233,587	-		EFB2_04026	0.48	-0.3
4,233,591	+		EFB2_04026	0.48	-1.5
4,233,591	+		EFB2_04026	0.48	-2.6
4,233,591	+		EFB2_04026	0.48	-0.7
4,233,623	+		EFB2_04026	0.51	-0.1
4,233,623	+		EFB2_04026	0.51	+1.0
4,233,623	+		EFB2_04026	0.51	+0.3
4,233,623	+		EFB2_04026	0.51	+2.3
4,233,623	+		EFB2_04026	0.51	-0.9
4,233,623	+		EFB2_04026	0.51	+0.8
4,233,623	+		EFB2_04026	0.51	-1.8
4,233,623	+		EFB2_04026	0.51	+0.2
4,233,623	+		EFB2_04026	0.51	-0.1
4,233,623	+		EFB2_04026	0.51	+2.6
4,233,623	+		EFB2_04026	0.51	+1.0
4,233,623	+		EFB2_04026	0.51	+0.5
4,233,624	-		EFB2_04026	0.51	+0.5
4,233,624	-		EFB2_04026	0.51	-1.9
4,233,624	-		EFB2_04026	0.51	+0.8
4,233,624	-		EFB2_04026	0.51	+2.3
4,233,624	-		EFB2_04026	0.51	+0.5
4,233,624	-		EFB2_04026	0.51	-0.0
4,233,624	-		EFB2_04026	0.51	+0.2
4,233,624	-		EFB2_04026	0.51	+0.2
4,233,624	-		EFB2_04026	0.51	-0.2
4,233,624	-		EFB2_04026	0.51	-2.6
4,233,624	-		EFB2_04026	0.51	+1.2
4,233,624	-		EFB2_04026	0.51	+0.1
4,233,624	-		EFB2_04026	0.51	-1.0
4,233,624	-		EFB2_04026	0.51	+0.5
4,233,624	-		EFB2_04026	0.51	+0.9
4,233,624	-		EFB2_04026	0.51	-1.5
4,233,624	-		EFB2_04026	0.51	-0.3
4,233,625	+		EFB2_04026	0.51	+0.2
4,233,625	+		EFB2_04026	0.51	+4.3
4,233,625	+		EFB2_04026	0.51	-2.3
4,233,625	+		EFB2_04026	0.51	+0.2
4,233,625	+		EFB2_04026	0.51	+0.8
4,233,625	+		EFB2_04026	0.51	+0.9
4,233,625	+		EFB2_04026	0.51	+0.3
4,233,625	+		EFB2_04026	0.51	+0.0
4,233,625	+		EFB2_04026	0.51	+0.8
4,233,625	+		EFB2_04026	0.51	-0.8
4,233,625	+		EFB2_04026	0.51	+4.3
4,233,625	+		EFB2_04026	0.51	-0.4
4,233,625	+		EFB2_04026	0.51	+0.7
4,233,626	-		EFB2_04026	0.51	+0.9
4,233,626	-		EFB2_04026	0.51	-0.6
4,233,626	-		EFB2_04026	0.51	-0.6
4,233,626	-		EFB2_04026	0.51	-0.1
4,233,626	-		EFB2_04026	0.51	+0.2
4,233,626	-		EFB2_04026	0.51	-3.8
4,233,626	-		EFB2_04026	0.51	+1.7
4,233,626	-		EFB2_04026	0.51	-1.7
4,233,626	-		EFB2_04026	0.51	+1.3
4,233,626	-		EFB2_04026	0.51	-0.2
4,233,626	-		EFB2_04026	0.51	+0.2
4,233,626	-		EFB2_04026	0.51	+0.9
4,233,626	-		EFB2_04026	0.51	-2.1
4,233,626	-		EFB2_04026	0.51	-0.4
4,233,634	+		EFB2_04026	0.51	-1.1
4,233,634	+		EFB2_04026	0.51	-0.2
4,233,634	+		EFB2_04026	0.51	-1.2
4,233,634	+		EFB2_04026	0.51	+0.7
4,233,634	+		EFB2_04026	0.51	+0.4
4,233,634	+		EFB2_04026	0.51	+0.8
4,233,634	+		EFB2_04026	0.51	+0.1
4,233,634	+		EFB2_04026	0.51	+0.8
4,233,635	-		EFB2_04026	0.51	+0.4
4,233,635	-		EFB2_04026	0.51	-3.1
4,233,635	-		EFB2_04026	0.51	-0.7
4,233,635	-		EFB2_04026	0.51	+0.1
4,233,635	-		EFB2_04026	0.51	+0.4
4,233,635	-		EFB2_04026	0.51	-1.2
4,233,635	-		EFB2_04026	0.51	-0.4
4,233,635	-		EFB2_04026	0.51	+0.2
4,233,635	-		EFB2_04026	0.51	+1.0
4,233,635	-		EFB2_04026	0.51	+0.2
4,233,635	-		EFB2_04026	0.51	-0.9
4,233,646	+		EFB2_04026	0.52	+1.0
4,233,672	-		EFB2_04026	0.54	-0.6
4,233,672	-		EFB2_04026	0.54	-0.4
4,233,684	-		EFB2_04026	0.55	-2.1
4,233,694	+		EFB2_04026	0.55	-2.7
4,233,694	+		EFB2_04026	0.55	-0.4
4,233,694	+		EFB2_04026	0.55	+0.6
4,233,694	+		EFB2_04026	0.55	-2.0
4,233,694	+		EFB2_04026	0.55	-1.9
4,233,694	+		EFB2_04026	0.55	+0.7
4,233,694	+		EFB2_04026	0.55	+2.7
4,233,694	+		EFB2_04026	0.55	+0.6
4,233,694	+		EFB2_04026	0.55	+0.6
4,233,695	-		EFB2_04026	0.55	-0.5
4,233,695	-		EFB2_04026	0.55	-0.6
4,233,695	-		EFB2_04026	0.55	+0.5
4,233,695	-		EFB2_04026	0.55	-0.2
4,233,695	-		EFB2_04026	0.55	-0.7
4,233,695	-		EFB2_04026	0.55	+1.3
4,233,695	-		EFB2_04026	0.55	+0.1
4,233,695	-		EFB2_04026	0.55	+1.0
4,233,695	-		EFB2_04026	0.55	-0.3
4,233,695	-		EFB2_04026	0.55	+0.6
4,233,695	-		EFB2_04026	0.55	-1.2
4,233,695	-		EFB2_04026	0.55	-0.6
4,233,757	+		EFB2_04026	0.60	-1.7
4,233,757	+		EFB2_04026	0.60	-2.0
4,233,757	+		EFB2_04026	0.60	-1.4
4,233,757	+		EFB2_04026	0.60	-1.4
4,233,757	+		EFB2_04026	0.60	+0.0
4,233,757	+		EFB2_04026	0.60	-1.6
4,233,757	+		EFB2_04026	0.60	+0.4
4,233,757	+		EFB2_04026	0.60	-0.7
4,233,757	+		EFB2_04026	0.60	+0.1
4,233,757	+		EFB2_04026	0.60	+1.1
4,233,757	+		EFB2_04026	0.60	-0.3
4,233,757	+		EFB2_04026	0.60	-0.3
4,233,757	+		EFB2_04026	0.60	-2.4
4,233,758	-		EFB2_04026	0.60	+0.2
4,233,758	-		EFB2_04026	0.60	+0.8
4,233,758	-		EFB2_04026	0.60	+1.1
4,233,758	-		EFB2_04026	0.60	+1.1
4,233,758	-		EFB2_04026	0.60	+1.2
4,233,758	-		EFB2_04026	0.60	-3.2
4,233,758	-		EFB2_04026	0.60	+0.1
4,233,758	-		EFB2_04026	0.60	-1.5
4,233,800	+		EFB2_04026	0.62	+0.1
4,233,800	+		EFB2_04026	0.62	+0.6
4,233,800	+		EFB2_04026	0.62	+0.9
4,233,800	+		EFB2_04026	0.62	-3.0
4,233,800	+		EFB2_04026	0.62	-3.0
4,233,801	-		EFB2_04026	0.62	+0.3
4,233,801	-		EFB2_04026	0.62	-1.2
4,233,801	-		EFB2_04026	0.62	+0.7
4,233,801	-		EFB2_04026	0.62	+0.4
4,233,801	-		EFB2_04026	0.62	-2.0
4,233,804	+		EFB2_04026	0.63	-0.2
4,233,804	+		EFB2_04026	0.63	-0.8
4,233,804	+		EFB2_04026	0.63	+1.8
4,233,804	+		EFB2_04026	0.63	+0.5
4,233,805	-		EFB2_04026	0.63	-0.2
4,233,805	-		EFB2_04026	0.63	-1.6
4,233,833	-		EFB2_04026	0.65	-0.2
4,233,833	-		EFB2_04026	0.65	+2.1
4,233,833	-		EFB2_04026	0.65	-0.4
4,233,848	+		EFB2_04026	0.66	+0.4
4,233,887	+		EFB2_04026	0.68	+0.0
4,233,888	-		EFB2_04026	0.68	+0.3
4,233,891	-		EFB2_04026	0.68	-2.1
4,233,901	+		EFB2_04026	0.69	+0.9
4,233,901	+		EFB2_04026	0.69	-0.2
4,233,914	+		EFB2_04026	0.70	-2.4
4,233,914	+		EFB2_04026	0.70	-0.2
4,233,968	+		EFB2_04026	0.74	-1.0
4,233,968	+		EFB2_04026	0.74	+1.3
4,233,968	+		EFB2_04026	0.74	+0.7
4,233,969	-		EFB2_04026	0.74	-2.9
4,233,969	-		EFB2_04026	0.74	+0.2
4,233,988	+		EFB2_04026	0.75	+0.3
4,233,988	+		EFB2_04026	0.75	-1.4
4,233,989	-		EFB2_04026	0.75	+2.2
4,233,989	-		EFB2_04026	0.75	-1.1
4,234,005	+		EFB2_04026	0.76	-2.3
4,234,005	+		EFB2_04026	0.76	+0.4
4,234,010	+		EFB2_04026	0.76	-0.2
4,234,010	+		EFB2_04026	0.76	+1.1
4,234,011	-		EFB2_04026	0.77	-0.2
4,234,011	-		EFB2_04026	0.77	-2.6
4,234,011	-		EFB2_04026	0.77	-2.7
4,234,102	-		EFB2_04026	0.83	+0.5
4,234,104	+		EFB2_04026	0.83	+0.7
4,234,104	+		EFB2_04026	0.83	+0.4
4,234,104	+		EFB2_04026	0.83	+0.8
4,234,104	+		EFB2_04026	0.83	-3.5
4,234,105	-		EFB2_04026	0.83	+1.2
4,234,105	-		EFB2_04026	0.83	-2.9
4,234,105	-		EFB2_04026	0.83	+0.9
4,234,105	-		EFB2_04026	0.83	+0.4
4,234,105	-		EFB2_04026	0.83	-0.4
4,234,129	-		EFB2_04026	0.84	+1.0
4,234,129	-		EFB2_04026	0.84	+1.2
4,234,144	+		EFB2_04026	0.85	-1.0
4,234,144	+		EFB2_04026	0.85	-3.2
4,234,144	+		EFB2_04026	0.85	-0.5
4,234,144	+		EFB2_04026	0.85	-0.1
4,234,144	+		EFB2_04026	0.85	+1.6
4,234,144	+		EFB2_04026	0.85	+0.3
4,234,144	+		EFB2_04026	0.85	-0.7
4,234,144	+		EFB2_04026	0.85	-0.2
4,234,144	+		EFB2_04026	0.85	+0.8
4,234,144	+		EFB2_04026	0.85	-0.5
4,234,145	-		EFB2_04026	0.85	+0.2
4,234,145	-		EFB2_04026	0.85	-0.4
4,234,145	-		EFB2_04026	0.85	+0.5
4,234,145	-		EFB2_04026	0.85	+1.8
4,234,145	-		EFB2_04026	0.85	+1.0
4,234,145	-		EFB2_04026	0.85	+0.1
4,234,145	-		EFB2_04026	0.85	-0.2
4,234,145	-		EFB2_04026	0.85	-3.0
4,234,145	-		EFB2_04026	0.85	+0.5
4,234,145	-		EFB2_04026	0.85	+0.7
4,234,147	+		EFB2_04026	0.86	-0.1
4,234,147	+		EFB2_04026	0.86	-0.7
4,234,147	+		EFB2_04026	0.86	-1.0
4,234,147	+		EFB2_04026	0.86	-1.5
4,234,147	+		EFB2_04026	0.86	+1.6
4,234,147	+		EFB2_04026	0.86	-2.2
4,234,147	+		EFB2_04026	0.86	+1.2
4,234,147	+		EFB2_04026	0.86	-0.7
4,234,147	+		EFB2_04026	0.86	+0.0
4,234,147	+		EFB2_04026	0.86	+0.1
4,234,147	+		EFB2_04026	0.86	-1.2
4,234,147	+		EFB2_04026	0.86	+0.0
4,234,147	+		EFB2_04026	0.86	+1.2
4,234,148	-		EFB2_04026	0.86	-1.5
4,234,148	-		EFB2_04026	0.86	+3.3
4,234,148	-		EFB2_04026	0.86	+1.7
4,234,148	-		EFB2_04026	0.86	+6.6
4,234,148	-		EFB2_04026	0.86	+0.6
4,234,148	-		EFB2_04026	0.86	+1.2
4,234,148	-		EFB2_04026	0.86	-0.6
4,234,148	-		EFB2_04026	0.86	+0.5
4,234,148	-		EFB2_04026	0.86	-1.1
4,234,148	-		EFB2_04026	0.86	-3.6
4,234,148	-		EFB2_04026	0.86	+1.7
4,234,148	-		EFB2_04026	0.86	-0.2
4,234,148	-		EFB2_04026	0.86	+0.5
4,234,188	-		EFB2_04026	0.88	+0.4
4,234,190	+		EFB2_04026	0.88	+0.1
4,234,190	+		EFB2_04026	0.88	+0.4
4,234,190	+		EFB2_04026	0.88	-0.3
4,234,190	+		EFB2_04026	0.88	-0.9
4,234,190	+		EFB2_04026	0.88	+2.2
4,234,190	+		EFB2_04026	0.88	-0.8
4,234,191	-		EFB2_04026	0.89	+1.5
4,234,191	-		EFB2_04026	0.89	+0.0
4,234,191	-		EFB2_04026	0.89	+0.3
4,234,191	-		EFB2_04026	0.89	-1.4
4,234,191	-		EFB2_04026	0.89	-3.6
4,234,191	-		EFB2_04026	0.89	+0.2
4,234,200	-		EFB2_04026	0.89	+0.1
4,234,215	+				-0.0
4,234,216	+				+2.1
4,234,216	+				+1.7
4,234,216	+				-0.6
4,234,216	+				+0.6
4,234,216	+				-0.5
4,234,216	+				-0.9
4,234,216	+				-2.4
4,234,216	+				+0.1
4,234,216	+				+0.2
4,234,216	+				+1.7
4,234,216	+				+1.2
4,234,216	+				-0.2
4,234,216	+				-2.1
4,234,216	+				+0.6
4,234,216	+				+0.1
4,234,216	+				-1.9
4,234,216	+				+1.8
4,234,216	+				+2.1
4,234,216	+				+0.6
4,234,216	+				+0.8
4,234,216	+				-2.2
4,234,217	-				+1.1
4,234,217	-				+1.4
4,234,217	-				+1.0
4,234,217	-				+0.6
4,234,217	-				+2.7
4,234,217	-				-1.1
4,234,217	-				+0.7
4,234,217	-				-2.6
4,234,217	-				-3.0
4,234,217	-				+0.9
4,234,217	-				-1.3
4,234,217	-				+0.2
4,234,217	-				-0.3
4,234,217	-				-0.0
4,234,217	-				-0.4
4,234,217	-				+0.9
4,234,217	-				-0.3
4,234,217	-				+0.1
4,234,217	-				-0.0
4,234,217	-				+1.1
4,234,224	+				+1.1
4,234,224	+				+1.5
4,234,224	+				-1.1
4,234,225	-				-3.3
4,234,239	+				+0.5
4,234,239	+				+0.3
4,234,239	+				-0.9
4,234,256	+				-0.5
4,234,257	-				-2.8
4,234,257	-				+0.7
4,234,257	-				-1.1
4,234,263	+				-0.3
4,234,268	+				-2.3
4,234,269	-				-1.5
4,234,269	-				-0.7
4,234,269	-				-2.0
4,234,301	+				+0.0
4,234,302	-				-1.5
4,234,302	-				-3.0
4,234,365	+				+0.5
4,234,365	+				-3.8
4,234,366	-				-2.8
4,234,391	+				+1.8
4,234,401	+				+1.2
4,234,402	-				-0.2
4,234,402	-				+0.2
4,234,403	+				+1.1
4,234,403	+				-0.1
4,234,403	+				+1.1
4,234,404	-				+0.2
4,234,404	-				+0.1
4,234,404	-				+1.6
4,234,440	+				-1.2
4,234,440	+				-0.3
4,234,440	+				+0.9
4,234,440	+				+3.8
4,234,440	+				+0.3
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