Strain Fitness in Escherichia fergusonii Becca around EFB2_03713

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
3,884,759	+		EFB2_03712	0.30	+0.5
3,884,759	+		EFB2_03712	0.30	+0.5
3,884,759	+		EFB2_03712	0.30	-1.1
3,884,759	+		EFB2_03712	0.30	+0.1
3,884,759	+		EFB2_03712	0.30	+1.0
3,884,760	-		EFB2_03712	0.30	-0.4
3,884,760	-		EFB2_03712	0.30	+1.3
3,884,760	-		EFB2_03712	0.30	-2.3
3,884,763	+		EFB2_03712	0.31	+0.6
3,884,763	+		EFB2_03712	0.31	+0.7
3,884,764	-		EFB2_03712	0.31	+0.4
3,884,764	-		EFB2_03712	0.31	+0.6
3,884,764	-		EFB2_03712	0.31	-0.5
3,884,855	+		EFB2_03712	0.37	-0.8
3,884,857	+		EFB2_03712	0.37	-1.2
3,884,857	+		EFB2_03712	0.37	+0.8
3,884,857	+		EFB2_03712	0.37	+1.5
3,884,857	+		EFB2_03712	0.37	-2.8
3,884,857	+		EFB2_03712	0.37	-1.1
3,884,857	+		EFB2_03712	0.37	+1.6
3,884,857	+		EFB2_03712	0.37	-0.8
3,884,857	+		EFB2_03712	0.37	-0.2
3,884,857	+		EFB2_03712	0.37	+0.6
3,884,857	+		EFB2_03712	0.37	-0.3
3,884,857	+		EFB2_03712	0.37	+1.1
3,884,857	+		EFB2_03712	0.37	-2.5
3,884,857	+		EFB2_03712	0.37	+1.6
3,884,857	+		EFB2_03712	0.37	-0.5
3,884,857	+		EFB2_03712	0.37	-0.5
3,884,857	+		EFB2_03712	0.37	+0.5
3,884,857	+		EFB2_03712	0.37	+2.3
3,884,857	+		EFB2_03712	0.37	+0.3
3,884,858	-		EFB2_03712	0.37	-0.5
3,884,858	-		EFB2_03712	0.37	-2.6
3,884,858	-		EFB2_03712	0.37	-0.3
3,884,858	-		EFB2_03712	0.37	+0.4
3,884,858	-		EFB2_03712	0.37	-1.3
3,884,858	-		EFB2_03712	0.37	-2.5
3,884,858	-		EFB2_03712	0.37	+0.0
3,884,858	-		EFB2_03712	0.37	-2.1
3,884,858	-		EFB2_03712	0.37	+1.0
3,884,858	-		EFB2_03712	0.37	-2.5
3,884,920	+		EFB2_03712	0.42	-0.5
3,884,920	+		EFB2_03712	0.42	-0.7
3,884,920	+		EFB2_03712	0.42	+1.3
3,884,921	-		EFB2_03712	0.42	+0.3
3,885,001	+		EFB2_03712	0.48	-3.4
3,885,001	+		EFB2_03712	0.48	+0.9
3,885,001	+		EFB2_03712	0.48	-1.7
3,885,001	+		EFB2_03712	0.48	-0.2
3,885,002	-		EFB2_03712	0.48	+0.9
3,885,002	-		EFB2_03712	0.48	-0.9
3,885,002	-		EFB2_03712	0.48	-3.0
3,885,002	-		EFB2_03712	0.48	-0.7
3,885,002	-		EFB2_03712	0.48	-0.2
3,885,164	+		EFB2_03712	0.60	+0.7
3,885,165	-		EFB2_03712	0.60	+0.8
3,885,207	+		EFB2_03712	0.63	-2.6
3,885,207	+		EFB2_03712	0.63	-1.4
3,885,208	-		EFB2_03712	0.63	+0.8
3,885,241	+		EFB2_03712	0.65	+1.1
3,885,241	+		EFB2_03712	0.65	-0.5
3,885,241	+		EFB2_03712	0.65	-2.6
3,885,241	+		EFB2_03712	0.65	-2.1
3,885,241	+		EFB2_03712	0.65	+1.0
3,885,242	-		EFB2_03712	0.65	+0.4
3,885,242	-		EFB2_03712	0.65	+0.2
3,885,242	-		EFB2_03712	0.65	+0.6
3,885,242	-		EFB2_03712	0.65	-1.0
3,885,337	+		EFB2_03712	0.72	-0.5
3,885,338	-		EFB2_03712	0.72	-1.1
3,885,338	-		EFB2_03712	0.72	-0.2
3,885,338	-		EFB2_03712	0.72	+0.6
3,885,338	-		EFB2_03712	0.72	-1.1
3,885,359	+		EFB2_03712	0.74	-0.3
3,885,359	+		EFB2_03712	0.74	-1.1
3,885,359	+		EFB2_03712	0.74	-3.9
3,885,359	+		EFB2_03712	0.74	-2.5
3,885,359	+		EFB2_03712	0.74	+0.4
3,885,359	+		EFB2_03712	0.74	+0.1
3,885,359	+		EFB2_03712	0.74	-2.1
3,885,359	+		EFB2_03712	0.74	-0.1
3,885,359	+		EFB2_03712	0.74	+1.5
3,885,360	-		EFB2_03712	0.74	-2.0
3,885,360	-		EFB2_03712	0.74	-0.3
3,885,360	-		EFB2_03712	0.74	+0.9
3,885,360	-		EFB2_03712	0.74	-2.7
3,885,360	-		EFB2_03712	0.74	-0.5
3,885,360	-		EFB2_03712	0.74	+2.2
3,885,360	-		EFB2_03712	0.74	+0.1
3,885,360	-		EFB2_03712	0.74	+2.3
3,885,406	+		EFB2_03712	0.77	-4.0
3,885,407	-		EFB2_03712	0.77	-1.6
3,885,407	-		EFB2_03712	0.77	-0.9
3,885,407	-		EFB2_03712	0.77	-1.9
3,885,407	-		EFB2_03712	0.77	-0.7
3,885,407	-		EFB2_03712	0.77	+1.1
3,885,461	+		EFB2_03712	0.81	+0.7
3,885,461	+		EFB2_03712	0.81	-0.6
3,885,461	+		EFB2_03712	0.81	+0.9
3,885,462	-		EFB2_03712	0.81	+0.7
3,885,505	-		EFB2_03712	0.84	+2.1
3,885,559	+		EFB2_03712	0.88	-1.0
3,885,559	+		EFB2_03712	0.88	+0.5
3,885,559	+		EFB2_03712	0.88	-3.6
3,885,559	+		EFB2_03712	0.88	-0.5
3,885,559	+		EFB2_03712	0.88	+0.9
3,885,559	+		EFB2_03712	0.88	-1.5
3,885,559	+		EFB2_03712	0.88	-1.8
3,885,559	+		EFB2_03712	0.88	+0.4
3,885,560	-		EFB2_03712	0.88	+0.6
3,885,560	-		EFB2_03712	0.88	+2.6
3,885,560	-		EFB2_03712	0.88	-0.2
3,885,560	-		EFB2_03712	0.88	+0.5
3,885,560	-		EFB2_03712	0.88	-0.8
3,885,560	-		EFB2_03712	0.88	+0.7
3,885,560	-		EFB2_03712	0.88	-0.4
3,885,560	-		EFB2_03712	0.88	-1.5
3,885,560	-		EFB2_03712	0.88	+0.5
3,885,560	-		EFB2_03712	0.88	-0.4
3,885,560	-		EFB2_03712	0.88	+0.1
3,885,560	-		EFB2_03712	0.88	-3.3
3,885,560	-		EFB2_03712	0.88	-2.0
3,885,560	-		EFB2_03712	0.88	-1.1
3,885,562	+		EFB2_03712	0.88	-1.3
3,885,562	+		EFB2_03712	0.88	-1.2
3,885,562	+		EFB2_03712	0.88	+1.5
3,885,562	+		EFB2_03712	0.88	-2.1
3,885,562	+		EFB2_03712	0.88	-2.2
3,885,562	+		EFB2_03712	0.88	+0.7
3,885,562	+		EFB2_03712	0.88	-0.3
3,885,562	+		EFB2_03712	0.88	+0.3
3,885,562	+		EFB2_03712	0.88	+0.4
3,885,562	+		EFB2_03712	0.88	-3.1
3,885,562	+		EFB2_03712	0.88	-3.4
3,885,563	-		EFB2_03712	0.88	+0.0
3,885,563	-		EFB2_03712	0.88	+0.1
3,885,563	-		EFB2_03712	0.88	-0.6
3,885,563	-		EFB2_03712	0.88	-2.5
3,885,563	-		EFB2_03712	0.88	-0.5
3,885,563	-		EFB2_03712	0.88	+1.0
3,885,563	-		EFB2_03712	0.88	-1.7
3,885,563	-		EFB2_03712	0.88	-0.7
3,885,606	+				+1.1
3,885,606	+				+0.5
3,885,607	-				+1.4
3,885,618	+				+1.3
3,885,618	+				-0.9
3,885,725	+				-1.3
3,885,725	+				+0.5
3,885,725	+				-2.9
3,885,725	+				+1.9
3,885,725	+				-1.7
3,885,725	+				+0.1
3,885,725	+				+1.2
3,885,725	+				-1.5
3,885,725	+				+0.9
3,885,725	+				+0.6
3,885,725	+				+0.3
3,885,725	+				+1.0
3,885,725	+				-1.9
3,885,725	+				+0.9
3,885,725	+				+2.0
3,885,725	+				-0.2
3,885,725	+				-1.8
3,885,725	+				-3.1
3,885,725	+				+0.7
3,885,726	-				+0.9
3,885,726	-				-0.2
3,885,726	-				-0.7
3,885,726	-				+1.4
3,885,726	-				+0.5
3,885,726	-				+0.2
3,885,726	-				+2.2
3,885,726	-				-0.1
3,885,726	-				+1.9
3,885,726	-				+1.0
3,885,726	-				-1.9
3,885,726	-				+0.9
3,885,726	-				-2.0
3,885,726	-				+1.0
3,885,726	-				-0.0
3,885,726	-				-2.2
3,885,733	+				+2.1
3,885,734	-				+2.3
3,885,734	-				-0.9
3,885,734	-				-0.2
3,885,734	-				-0.9
3,885,734	-				+0.3
3,885,734	-				+0.4
3,885,740	+				+0.5
3,885,740	+				+0.8
3,885,740	+				-0.9
3,885,741	-				-0.4
3,885,741	-				+1.8
3,885,743	+				+1.1
3,885,743	+				+0.1
3,885,743	+				-0.5
3,885,743	+				+0.9
3,885,743	+				+0.4
3,885,743	+				-0.0
3,885,744	-				+0.3
3,885,746	+				+0.3
3,885,746	+				+1.7
3,885,746	+				+1.2
3,885,746	+				-2.9
3,885,747	-				-0.2
3,885,747	-				-1.1
3,885,747	-				+0.6
3,885,747	-				+0.0
3,885,747	-				+0.3
3,885,747	-				-0.8
3,885,747	-				+0.3
3,885,800	+				-0.2
3,885,800	+				-2.5
3,885,800	+				-1.7
3,885,800	+				+0.4
3,885,801	-				+1.0
3,885,890	+		EFB2_03713	0.17	-1.6
3,885,890	+		EFB2_03713	0.17	+0.4
3,885,890	+		EFB2_03713	0.17	+3.1
3,885,890	+		EFB2_03713	0.17	-2.1
3,885,890	+		EFB2_03713	0.17	+1.5
3,885,890	+		EFB2_03713	0.17	-2.8
3,885,890	+		EFB2_03713	0.17	-1.7
3,885,890	+		EFB2_03713	0.17	-0.5
3,885,890	+		EFB2_03713	0.17	-0.9
3,885,890	+		EFB2_03713	0.17	+1.6
3,885,890	+		EFB2_03713	0.17	+0.4
3,885,890	+		EFB2_03713	0.17	-0.5
3,885,890	+		EFB2_03713	0.17	-0.7
3,885,891	-		EFB2_03713	0.17	+1.9
3,885,891	-		EFB2_03713	0.17	+0.3
3,885,891	-		EFB2_03713	0.17	+0.8
3,885,891	-		EFB2_03713	0.17	-3.8
3,885,891	-		EFB2_03713	0.17	+1.1
3,885,891	-		EFB2_03713	0.17	+0.5
3,885,891	-		EFB2_03713	0.17	-2.6
3,885,891	-		EFB2_03713	0.17	-0.1
3,885,891	-		EFB2_03713	0.17	-3.4
3,885,891	-		EFB2_03713	0.17	+0.2
3,885,892	+		EFB2_03713	0.17	-3.3
3,885,892	+		EFB2_03713	0.17	+1.3
3,885,892	+		EFB2_03713	0.17	+1.0
3,885,892	+		EFB2_03713	0.17	-0.6
3,885,892	+		EFB2_03713	0.17	+1.2
3,885,892	+		EFB2_03713	0.17	+0.1
3,885,893	-		EFB2_03713	0.17	-2.4
3,885,893	-		EFB2_03713	0.17	-3.2
3,885,893	-		EFB2_03713	0.17	+1.1
3,885,893	-		EFB2_03713	0.17	-0.2
3,885,911	+		EFB2_03713	0.19	+0.2
3,885,911	+		EFB2_03713	0.19	-0.2
3,885,911	+		EFB2_03713	0.19	+0.6
3,885,911	+		EFB2_03713	0.19	+0.1
3,885,911	+		EFB2_03713	0.19	-1.6
3,885,911	+		EFB2_03713	0.19	+0.3
3,885,911	+		EFB2_03713	0.19	-1.3
3,885,911	+		EFB2_03713	0.19	-0.8
3,885,912	-		EFB2_03713	0.19	+2.1
3,885,912	-		EFB2_03713	0.19	-1.3
3,885,912	-		EFB2_03713	0.19	+1.2
3,885,912	-		EFB2_03713	0.19	-1.2
3,885,915	+		EFB2_03713	0.19	-1.9
3,885,916	-		EFB2_03713	0.19	-0.5
3,885,916	-		EFB2_03713	0.19	-2.5
3,885,956	+		EFB2_03713	0.24	-0.2
3,885,956	+		EFB2_03713	0.24	-1.6
3,885,956	+		EFB2_03713	0.24	-3.8
3,885,956	+		EFB2_03713	0.24	-0.7
3,885,956	+		EFB2_03713	0.24	-1.0
3,885,956	+		EFB2_03713	0.24	-0.8
3,885,956	+		EFB2_03713	0.24	-2.5
3,885,956	+		EFB2_03713	0.24	-0.9
3,885,957	-		EFB2_03713	0.24	-0.1
3,885,957	-		EFB2_03713	0.24	+0.5
3,885,957	-		EFB2_03713	0.24	+0.2
3,885,957	-		EFB2_03713	0.24	-0.8
3,886,063	+		EFB2_03713	0.35	+1.3
3,886,080	-		EFB2_03713	0.37	-0.6
3,886,166	+		EFB2_03713	0.46	-1.2
3,886,166	+		EFB2_03713	0.46	-1.9
3,886,166	+		EFB2_03713	0.46	-0.2
3,886,166	+		EFB2_03713	0.46	-2.8
3,886,167	-		EFB2_03713	0.46	+2.1
3,886,167	-		EFB2_03713	0.46	+0.3
3,886,251	+		EFB2_03713	0.55	-3.2
3,886,251	+		EFB2_03713	0.55	+0.0
3,886,251	+		EFB2_03713	0.55	-1.4
3,886,251	+		EFB2_03713	0.55	+1.2
3,886,252	-		EFB2_03713	0.55	-3.1
3,886,411	+		EFB2_03713	0.71	+0.0
3,886,411	+		EFB2_03713	0.71	+1.6
3,886,412	-		EFB2_03713	0.72	+0.1
3,886,412	-		EFB2_03713	0.72	+1.2
3,886,412	-		EFB2_03713	0.72	-1.6
3,886,500	+		EFB2_03713	0.81	-0.0
3,886,501	-		EFB2_03713	0.81	+0.7
3,886,631	+				-1.1
3,886,632	-				+0.9
3,886,640	+				+1.8
3,886,640	+				-0.3
3,886,641	-				+0.6
3,886,687	-				+1.0
3,886,688	+				+0.5
3,886,688	+				-1.0
3,886,688	+				+0.3
3,886,688	+				-0.6
3,886,688	+				-0.4
3,886,688	+				+0.2
3,886,688	+				-0.5
3,886,688	+				-2.0
3,886,688	+				+0.7
3,886,688	+				+2.7
3,886,688	+				-0.1
3,886,688	+				-0.7
3,886,688	+				-1.1
3,886,688	+				+0.0
3,886,689	-				+0.0
3,886,689	-				+0.0
3,886,689	-				+0.1
3,886,689	-				+1.0
3,886,689	-				+0.2
3,886,689	-				+0.7
3,886,689	-				+0.4
3,886,689	-				-1.5
3,886,689	-				-0.9
3,886,689	-				-0.9
3,886,689	-				+1.5
3,886,689	-				-0.9
3,886,689	-				-3.3
3,886,689	-				+0.8
3,886,689	-				+1.8
3,886,689	-				-1.2
3,886,716	-				+1.3
3,886,744	+				-2.3
3,886,745	-				-0.0
3,886,751	-				+0.6
3,886,760	-				+0.3
3,886,760	-				-0.4
3,886,780	+				+1.2
3,886,780	+				+0.0
3,886,780	+				-1.0
3,886,781	-				-3.2
3,886,843	+				-0.9
3,886,844	-				-2.1
3,886,853	-				+0.6
3,886,874	-				+0.0
3,886,923	+				+1.6
3,886,923	+				-2.0
3,886,923	+				+0.5
3,886,923	+				+0.7
3,886,923	+				+1.3
3,886,924	-				+1.1
3,886,924	-				-3.1
3,887,255	+		EFB2_03714	0.23	-0.2
3,887,260	+		EFB2_03714	0.23	+0.1
3,887,260	+		EFB2_03714	0.23	+0.7
3,887,260	+		EFB2_03714	0.23	-2.6
3,887,260	+		EFB2_03714	0.23	-2.5
3,887,261	-		EFB2_03714	0.23	+0.9
3,887,261	-		EFB2_03714	0.23	+1.4
3,887,261	-		EFB2_03714	0.23	-1.0
3,887,261	-		EFB2_03714	0.23	-0.3
3,887,261	-		EFB2_03714	0.23	+0.5
3,887,261	-		EFB2_03714	0.23	-0.2
3,887,261	-		EFB2_03714	0.23	-1.6
3,887,261	-		EFB2_03714	0.23	-0.2
3,887,261	-		EFB2_03714	0.23	-0.3
3,887,261	-		EFB2_03714	0.23	+0.2
3,887,261	-		EFB2_03714	0.23	+1.5
3,887,261	-		EFB2_03714	0.23	+0.5
3,887,312	+		EFB2_03714	0.27	-1.5
3,887,312	+		EFB2_03714	0.27	-2.7
3,887,312	+		EFB2_03714	0.27	-2.5
3,887,312	+		EFB2_03714	0.27	+0.2
3,887,312	+		EFB2_03714	0.27	-0.6
3,887,312	+		EFB2_03714	0.27	-0.2
3,887,313	-		EFB2_03714	0.27	-0.1
3,887,313	-		EFB2_03714	0.27	-0.5
3,887,313	-		EFB2_03714	0.27	-0.9
3,887,313	-		EFB2_03714	0.27	-0.7
3,887,313	-		EFB2_03714	0.27	-0.4
3,887,314	+		EFB2_03714	0.27	-0.2
3,887,314	+		EFB2_03714	0.27	-1.1
3,887,314	+		EFB2_03714	0.27	-2.5
3,887,314	+		EFB2_03714	0.27	+1.3
3,887,314	+		EFB2_03714	0.27	+0.2
3,887,315	-		EFB2_03714	0.27	+2.1
3,887,315	-		EFB2_03714	0.27	-2.1
3,887,315	-		EFB2_03714	0.27	+0.4
3,887,315	-		EFB2_03714	0.27	+1.0
3,887,437	+		EFB2_03714	0.36	-0.2
3,887,437	+		EFB2_03714	0.36	+0.5
3,887,437	+		EFB2_03714	0.36	+0.6
3,887,471	+		EFB2_03714	0.38	-2.7
3,887,471	+		EFB2_03714	0.38	-0.8
3,887,472	-		EFB2_03714	0.38	-0.3
3,887,472	-		EFB2_03714	0.38	-1.5
3,887,472	-		EFB2_03714	0.38	+0.1
3,887,472	-		EFB2_03714	0.38	+0.2
3,887,472	-		EFB2_03714	0.38	+1.6
3,887,472	-		EFB2_03714	0.38	-2.2
3,887,472	-		EFB2_03714	0.38	-1.7
3,887,472	-		EFB2_03714	0.38	-0.6
3,887,503	+		EFB2_03714	0.40	+0.5
3,887,503	+		EFB2_03714	0.40	+0.1
3,887,503	+		EFB2_03714	0.40	+0.5
3,887,503	+		EFB2_03714	0.40	+1.5
3,887,503	+		EFB2_03714	0.40	+0.1
3,887,504	-		EFB2_03714	0.41	-0.4
3,887,504	-		EFB2_03714	0.41	-2.2
3,887,504	-		EFB2_03714	0.41	+2.9
3,887,504	-		EFB2_03714	0.41	-0.4
3,887,504	-		EFB2_03714	0.41	+1.1
3,887,504	-		EFB2_03714	0.41	+0.4
3,887,554	+		EFB2_03714	0.44	-0.5
3,887,567	+		EFB2_03714	0.45	-0.4
3,887,567	+		EFB2_03714	0.45	+0.1
3,887,568	-		EFB2_03714	0.45	+1.1
3,887,612	+		EFB2_03714	0.48	-2.1
3,887,613	-		EFB2_03714	0.48	+2.1
3,887,639	+		EFB2_03714	0.50	+0.4
3,887,639	+		EFB2_03714	0.50	+3.7
3,887,639	+		EFB2_03714	0.50	+0.5
3,887,639	+		EFB2_03714	0.50	+0.8
3,887,640	-		EFB2_03714	0.50	-0.7
3,887,640	-		EFB2_03714	0.50	+0.4
3,887,640	-		EFB2_03714	0.50	+0.7
3,887,662	-		EFB2_03714	0.52	-0.4