Strain Fitness in Escherichia fergusonii Becca around EFB2_03429

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
3,583,775	+				-1.5
3,583,775	+				-1.0
3,583,776	-				+1.1
3,583,776	-				-0.0
3,583,783	+				-0.1
3,583,784	-				+2.3
3,583,784	-				-1.2
3,583,784	-				+0.8
3,583,860	-		EFB2_03428	0.12	-1.9
3,583,860	-		EFB2_03428	0.12	+0.6
3,583,866	-		EFB2_03428	0.13	+0.8
3,583,896	+		EFB2_03428	0.17	-2.1
3,583,896	+		EFB2_03428	0.17	+0.5
3,583,896	+		EFB2_03428	0.17	+2.7
3,583,896	+		EFB2_03428	0.17	+1.0
3,583,896	+		EFB2_03428	0.17	-0.4
3,583,896	+		EFB2_03428	0.17	+0.4
3,583,896	+		EFB2_03428	0.17	+0.7
3,583,896	+		EFB2_03428	0.17	-0.9
3,583,896	+		EFB2_03428	0.17	+0.8
3,583,896	+		EFB2_03428	0.17	+0.6
3,583,896	+		EFB2_03428	0.17	+1.1
3,583,896	+		EFB2_03428	0.17	-2.8
3,583,896	+		EFB2_03428	0.17	-0.5
3,583,897	-		EFB2_03428	0.17	+0.5
3,583,897	-		EFB2_03428	0.17	+3.5
3,583,897	-		EFB2_03428	0.17	+1.8
3,583,897	-		EFB2_03428	0.17	-4.3
3,583,897	-		EFB2_03428	0.17	+0.8
3,583,897	-		EFB2_03428	0.17	+0.1
3,583,897	-		EFB2_03428	0.17	-2.6
3,583,897	-		EFB2_03428	0.17	+2.9
3,583,897	-		EFB2_03428	0.17	+0.1
3,583,897	-		EFB2_03428	0.17	+0.6
3,583,897	-		EFB2_03428	0.17	+0.8
3,583,897	-		EFB2_03428	0.17	-3.1
3,583,897	-		EFB2_03428	0.17	+1.0
3,583,897	-		EFB2_03428	0.17	+1.4
3,583,954	+		EFB2_03428	0.25	+0.6
3,583,955	-		EFB2_03428	0.25	-0.4
3,583,971	+		EFB2_03428	0.27	-0.8
3,583,971	+		EFB2_03428	0.27	-0.1
3,583,971	+		EFB2_03428	0.27	+2.1
3,583,971	+		EFB2_03428	0.27	+1.3
3,583,972	-		EFB2_03428	0.27	-0.5
3,583,972	-		EFB2_03428	0.27	+2.3
3,583,972	-		EFB2_03428	0.27	+1.2
3,583,972	-		EFB2_03428	0.27	+4.7
3,583,972	-		EFB2_03428	0.27	+2.1
3,583,972	-		EFB2_03428	0.27	+0.5
3,583,972	-		EFB2_03428	0.27	+0.1
3,583,972	-		EFB2_03428	0.27	+0.3
3,583,972	-		EFB2_03428	0.27	-1.8
3,583,972	-		EFB2_03428	0.27	-0.8
3,583,972	-		EFB2_03428	0.27	+0.1
3,583,973	+		EFB2_03428	0.27	+0.5
3,583,973	+		EFB2_03428	0.27	-2.7
3,583,974	-		EFB2_03428	0.27	+0.2
3,583,974	-		EFB2_03428	0.27	-1.2
3,584,028	+		EFB2_03428	0.35	-2.6
3,584,028	+		EFB2_03428	0.35	+2.2
3,584,028	+		EFB2_03428	0.35	+0.0
3,584,028	+		EFB2_03428	0.35	+1.3
3,584,028	+		EFB2_03428	0.35	-3.1
3,584,028	+		EFB2_03428	0.35	+1.5
3,584,028	+		EFB2_03428	0.35	-1.2
3,584,028	+		EFB2_03428	0.35	+0.1
3,584,028	+		EFB2_03428	0.35	+0.9
3,584,028	+		EFB2_03428	0.35	+0.6
3,584,028	+		EFB2_03428	0.35	-0.4
3,584,028	+		EFB2_03428	0.35	-0.8
3,584,028	+		EFB2_03428	0.35	-0.0
3,584,028	+		EFB2_03428	0.35	+0.7
3,584,028	+		EFB2_03428	0.35	+1.0
3,584,028	+		EFB2_03428	0.35	+2.5
3,584,028	+		EFB2_03428	0.35	+1.7
3,584,029	-		EFB2_03428	0.35	-1.9
3,584,029	-		EFB2_03428	0.35	+0.4
3,584,029	-		EFB2_03428	0.35	+0.3
3,584,029	-		EFB2_03428	0.35	-0.5
3,584,029	-		EFB2_03428	0.35	-2.4
3,584,029	-		EFB2_03428	0.35	+0.1
3,584,029	-		EFB2_03428	0.35	-0.5
3,584,029	-		EFB2_03428	0.35	+0.1
3,584,029	-		EFB2_03428	0.35	-2.5
3,584,029	-		EFB2_03428	0.35	+2.1
3,584,029	-		EFB2_03428	0.35	+1.5
3,584,029	-		EFB2_03428	0.35	-0.5
3,584,029	-		EFB2_03428	0.35	+1.1
3,584,064	+		EFB2_03428	0.39	-0.5
3,584,064	+		EFB2_03428	0.39	+0.4
3,584,064	+		EFB2_03428	0.39	-0.6
3,584,064	+		EFB2_03428	0.39	+0.5
3,584,064	+		EFB2_03428	0.39	+0.2
3,584,064	+		EFB2_03428	0.39	+0.4
3,584,064	+		EFB2_03428	0.39	-0.1
3,584,064	+		EFB2_03428	0.39	-1.6
3,584,064	+		EFB2_03428	0.39	-0.2
3,584,064	+		EFB2_03428	0.39	-0.8
3,584,064	+		EFB2_03428	0.39	+0.3
3,584,064	+		EFB2_03428	0.39	-1.1
3,584,064	+		EFB2_03428	0.39	+1.6
3,584,065	-		EFB2_03428	0.40	+0.4
3,584,065	-		EFB2_03428	0.40	-2.0
3,584,065	-		EFB2_03428	0.40	+2.1
3,584,065	-		EFB2_03428	0.40	-0.1
3,584,065	-		EFB2_03428	0.40	+1.0
3,584,065	-		EFB2_03428	0.40	-1.7
3,584,065	-		EFB2_03428	0.40	-2.9
3,584,065	-		EFB2_03428	0.40	+1.0
3,584,065	-		EFB2_03428	0.40	+0.5
3,584,065	-		EFB2_03428	0.40	-0.2
3,584,081	+		EFB2_03428	0.42	+1.1
3,584,081	+		EFB2_03428	0.42	-3.0
3,584,081	+		EFB2_03428	0.42	+0.9
3,584,081	+		EFB2_03428	0.42	+0.5
3,584,082	-		EFB2_03428	0.42	-1.8
3,584,084	+		EFB2_03428	0.42	+0.3
3,584,085	-		EFB2_03428	0.42	+0.7
3,584,130	+		EFB2_03428	0.48	+1.4
3,584,130	+		EFB2_03428	0.48	+0.7
3,584,130	+		EFB2_03428	0.48	+0.1
3,584,130	+		EFB2_03428	0.48	+1.5
3,584,130	+		EFB2_03428	0.48	-0.8
3,584,130	+		EFB2_03428	0.48	-2.1
3,584,130	+		EFB2_03428	0.48	+1.3
3,584,130	+		EFB2_03428	0.48	+0.5
3,584,130	+		EFB2_03428	0.48	-0.2
3,584,130	+		EFB2_03428	0.48	-0.3
3,584,130	+		EFB2_03428	0.48	-0.9
3,584,130	+		EFB2_03428	0.48	-0.6
3,584,130	+		EFB2_03428	0.48	+0.5
3,584,131	-		EFB2_03428	0.48	-0.3
3,584,131	-		EFB2_03428	0.48	-1.9
3,584,131	-		EFB2_03428	0.48	-1.7
3,584,131	-		EFB2_03428	0.48	-0.4
3,584,131	-		EFB2_03428	0.48	-0.0
3,584,131	-		EFB2_03428	0.48	-0.4
3,584,131	-		EFB2_03428	0.48	-2.2
3,584,131	-		EFB2_03428	0.48	-0.8
3,584,131	-		EFB2_03428	0.48	-0.9
3,584,131	-		EFB2_03428	0.48	-1.8
3,584,131	-		EFB2_03428	0.48	-0.7
3,584,131	-		EFB2_03428	0.48	+0.5
3,584,131	-		EFB2_03428	0.48	-0.5
3,584,150	+		EFB2_03428	0.51	-0.3
3,584,150	+		EFB2_03428	0.51	+1.1
3,584,150	+		EFB2_03428	0.51	+1.5
3,584,150	+		EFB2_03428	0.51	-0.9
3,584,150	+		EFB2_03428	0.51	-0.7
3,584,151	-		EFB2_03428	0.51	-0.2
3,584,151	-		EFB2_03428	0.51	-1.7
3,584,151	-		EFB2_03428	0.51	-0.6
3,584,151	-		EFB2_03428	0.51	-0.8
3,584,151	-		EFB2_03428	0.51	+0.5
3,584,151	-		EFB2_03428	0.51	+0.5
3,584,160	+		EFB2_03428	0.52	-0.6
3,584,160	+		EFB2_03428	0.52	-0.1
3,584,160	+		EFB2_03428	0.52	-0.9
3,584,283	+		EFB2_03428	0.69	+0.3
3,584,283	+		EFB2_03428	0.69	-1.6
3,584,283	+		EFB2_03428	0.69	-0.7
3,584,283	+		EFB2_03428	0.69	+0.5
3,584,283	+		EFB2_03428	0.69	-4.4
3,584,283	+		EFB2_03428	0.69	-0.8
3,584,283	+		EFB2_03428	0.69	+1.5
3,584,283	+		EFB2_03428	0.69	+0.6
3,584,283	+		EFB2_03428	0.69	+0.1
3,584,283	+		EFB2_03428	0.69	-0.5
3,584,283	+		EFB2_03428	0.69	-0.2
3,584,283	+		EFB2_03428	0.69	-1.0
3,584,283	+		EFB2_03428	0.69	+0.8
3,584,283	+		EFB2_03428	0.69	+0.7
3,584,283	+		EFB2_03428	0.69	+0.2
3,584,283	+		EFB2_03428	0.69	+1.1
3,584,283	+		EFB2_03428	0.69	+0.8
3,584,283	+		EFB2_03428	0.69	+1.7
3,584,283	+		EFB2_03428	0.69	+0.8
3,584,284	-		EFB2_03428	0.69	-1.4
3,584,284	-		EFB2_03428	0.69	+3.1
3,584,284	-		EFB2_03428	0.69	-1.1
3,584,284	-		EFB2_03428	0.69	+0.7
3,584,284	-		EFB2_03428	0.69	-0.7
3,584,284	-		EFB2_03428	0.69	-0.7
3,584,284	-		EFB2_03428	0.69	-0.9
3,584,284	-		EFB2_03428	0.69	+1.9
3,584,284	-		EFB2_03428	0.69	-0.8
3,584,284	-		EFB2_03428	0.69	-1.3
3,584,284	-		EFB2_03428	0.69	-0.4
3,584,284	-		EFB2_03428	0.69	+1.0
3,584,284	-		EFB2_03428	0.69	+0.2
3,584,284	-		EFB2_03428	0.69	-1.9
3,584,284	-		EFB2_03428	0.69	-2.0
3,584,284	-		EFB2_03428	0.69	-0.2
3,584,284	-		EFB2_03428	0.69	-0.3
3,584,284	-		EFB2_03428	0.69	+0.4
3,584,284	-		EFB2_03428	0.69	-0.8
3,584,284	-		EFB2_03428	0.69	+0.2
3,584,323	+		EFB2_03428	0.74	+0.9
3,584,324	-		EFB2_03428	0.74	-1.3
3,584,324	-		EFB2_03428	0.74	+0.2
3,584,378	+		EFB2_03428	0.81	-1.5
3,584,378	+		EFB2_03428	0.81	-1.5
3,584,462	+				+0.0
3,584,462	+				+1.2
3,584,462	+				+0.8
3,584,462	+				+0.5
3,584,462	+				+0.5
3,584,462	+				+0.1
3,584,462	+				+1.4
3,584,462	+				+0.2
3,584,462	+				+1.3
3,584,462	+				+1.1
3,584,462	+				-0.3
3,584,462	+				-0.4
3,584,462	+				-2.7
3,584,462	+				-1.1
3,584,462	+				-0.1
3,584,462	+				+1.3
3,584,463	-				-0.6
3,584,463	-				-2.5
3,584,463	-				-0.8
3,584,463	-				-2.5
3,584,463	-				-2.1
3,584,463	-				+0.1
3,584,463	-				-1.7
3,584,463	-				+0.6
3,584,463	-				-2.0
3,584,463	-				+1.8
3,584,488	-				-2.5
3,584,488	-				+0.9
3,584,513	+				-1.2
3,584,514	-				-3.5
3,584,514	-				+0.6
3,584,514	-				+0.8
3,584,514	-				+1.3
3,584,521	+				+0.2
3,584,521	+				-1.6
3,584,521	+				-0.1
3,584,521	+				+0.7
3,584,522	-				-0.9
3,584,522	-				+0.2
3,584,551	-				-2.9
3,584,616	-				-0.7
3,584,620	-				-0.3
3,584,622	-				-0.2
3,584,726	+				-1.2
3,584,774	+				+1.5
3,584,774	+				-2.5
3,584,774	+				+0.8
3,584,774	+				-0.7
3,584,774	+				-1.0
3,584,774	+				+2.6
3,584,774	+				+0.7
3,584,774	+				-2.7
3,584,774	+				+0.9
3,584,774	+				-1.4
3,584,774	+				-2.7
3,584,774	+				+0.1
3,584,774	+				+1.1
3,584,774	+				+2.1
3,584,774	+				-0.2
3,584,774	+				+2.3
3,584,774	+				-2.4
3,584,774	+				-3.0
3,584,774	+				+0.5
3,584,774	+				-2.5
3,584,775	-				+1.5
3,584,775	-				-0.9
3,584,775	-				+0.9
3,584,775	-				+0.1
3,584,775	-				+0.9
3,584,775	-				+2.1
3,584,775	-				-0.0
3,584,775	-				-2.0
3,584,775	-				+1.4
3,584,775	-				-0.6
3,584,775	-				+0.4
3,584,775	-				-0.1
3,584,775	-				+0.7
3,584,775	-				+0.2
3,584,775	-				+0.2
3,584,775	-				+0.0
3,584,775	-				+0.1
3,584,775	-				-1.5
3,584,775	-				-0.1
3,584,775	-				-1.3
3,584,775	-				+0.7
3,584,775	-				+0.9
3,584,775	-				-1.6
3,584,775	-				-0.7
3,584,795	-				-1.2
3,584,828	+				-0.0
3,584,829	-				-1.1
3,584,829	-				-1.1
3,584,829	-				+1.7
3,584,886	-				-0.3
3,584,886	-				+1.1
3,584,889	+				-1.1
3,584,889	+				-1.6
3,584,890	-				+0.1
3,584,890	-				-1.7
3,584,890	-				-2.0
3,584,965	-		EFB2_03429	0.11	-0.9
3,584,965	-		EFB2_03429	0.11	+0.7
3,584,995	+		EFB2_03429	0.13	+0.7
3,584,995	+		EFB2_03429	0.13	-2.2
3,585,009	+		EFB2_03429	0.14	+0.3
3,585,009	+		EFB2_03429	0.14	-1.0
3,585,009	+		EFB2_03429	0.14	+1.0
3,585,009	+		EFB2_03429	0.14	-0.0
3,585,009	+		EFB2_03429	0.14	+1.2
3,585,009	+		EFB2_03429	0.14	+1.9
3,585,010	-		EFB2_03429	0.14	-1.6
3,585,036	+		EFB2_03429	0.16	+0.0
3,585,036	+		EFB2_03429	0.16	-0.6
3,585,037	-		EFB2_03429	0.16	-2.3
3,585,037	-		EFB2_03429	0.16	-1.7
3,585,093	+		EFB2_03429	0.19	-0.7
3,585,093	+		EFB2_03429	0.19	-1.8
3,585,153	+		EFB2_03429	0.23	-1.8
3,585,153	+		EFB2_03429	0.23	+0.5
3,585,154	-		EFB2_03429	0.23	-0.5
3,585,174	+		EFB2_03429	0.24	-3.0
3,585,174	+		EFB2_03429	0.24	+1.7
3,585,174	+		EFB2_03429	0.24	-2.0
3,585,174	+		EFB2_03429	0.24	+0.4
3,585,174	+		EFB2_03429	0.24	-1.2
3,585,174	+		EFB2_03429	0.24	+0.1
3,585,174	+		EFB2_03429	0.24	-0.0
3,585,175	-		EFB2_03429	0.24	+1.6
3,585,175	-		EFB2_03429	0.24	+1.0
3,585,175	-		EFB2_03429	0.24	-0.2
3,585,175	-		EFB2_03429	0.24	+3.6
3,585,213	+		EFB2_03429	0.26	-2.3
3,585,213	+		EFB2_03429	0.26	-0.3
3,585,213	+		EFB2_03429	0.26	+3.1
3,585,213	+		EFB2_03429	0.26	-0.9
3,585,213	+		EFB2_03429	0.26	-0.6
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3,587,437	+				-0.1
3,587,437	+				+0.3
3,587,437	+				-1.0
3,587,437	+				-0.1
3,587,437	+				-0.3
3,587,437	+				+0.1
3,587,437	+				-1.9
3,587,437	+				+0.5
3,587,437	+				-1.2
3,587,437	+				+0.5
3,587,437	+				+2.3
3,587,437	+				-2.4
3,587,437	+				+0.5
3,587,437	+				+2.1
3,587,437	+				-2.2
3,587,437	+				+0.8
3,587,437	+				-2.3
3,587,437	+				-1.8
3,587,437	+				+0.2
3,587,437	+				+0.7
3,587,437	+				+1.1
3,587,437	+				+0.5
3,587,438	-				+0.8