Strain Fitness in Escherichia fergusonii Becca around EFB2_02949

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
3,076,152	+		EFB2_02946	0.87	+1.2
3,076,152	+		EFB2_02946	0.87	-1.2
3,076,152	+		EFB2_02946	0.87	+0.3
3,076,152	+		EFB2_02946	0.87	-2.6
3,076,153	-		EFB2_02946	0.88	+0.9
3,076,153	-		EFB2_02946	0.88	+1.9
3,076,153	-		EFB2_02946	0.88	-0.2
3,076,153	-		EFB2_02946	0.88	-2.5
3,076,157	+		EFB2_02946	0.88	-2.8
3,076,158	-		EFB2_02946	0.89	+1.1
3,076,202	+				-3.7
3,076,202	+				+0.1
3,076,202	+				-0.7
3,076,202	+				-2.6
3,076,202	+				-3.6
3,076,202	+				+1.1
3,076,202	+				+0.5
3,076,202	+				-1.4
3,076,202	+				-1.5
3,076,202	+				-1.3
3,076,202	+				+0.7
3,076,202	+				+2.1
3,076,202	+				-2.6
3,076,202	+				+2.7
3,076,202	+				-1.1
3,076,202	+				+0.3
3,076,202	+				-0.9
3,076,202	+				-2.0
3,076,202	+				+2.3
3,076,202	+				+0.0
3,076,202	+				-2.6
3,076,202	+				+1.9
3,076,202	+				+0.6
3,076,203	-				+1.8
3,076,203	-				-2.2
3,076,203	-				-3.2
3,076,203	-				+1.1
3,076,203	-				-2.1
3,076,203	-				-1.1
3,076,203	-				-1.3
3,076,203	-				-0.5
3,076,203	-				+1.5
3,076,203	-				-2.0
3,076,203	-				-2.3
3,076,203	-				+0.8
3,076,203	-				-1.2
3,076,203	-				+0.5
3,076,203	-				+2.6
3,076,203	-				+0.9
3,076,203	-				-0.0
3,076,203	-				+0.8
3,076,203	-				-1.2
3,076,203	-				-0.9
3,076,203	-				-0.0
3,076,203	-				-0.2
3,076,203	-				+0.1
3,076,204	+				+1.0
3,076,204	+				+0.6
3,076,204	+				-1.0
3,076,204	+				+1.9
3,076,204	+				-0.7
3,076,204	+				+2.6
3,076,204	+				-1.0
3,076,204	+				+1.7
3,076,204	+				-2.5
3,076,204	+				+0.4
3,076,204	+				-1.6
3,076,204	+				-2.8
3,076,204	+				-1.5
3,076,204	+				+0.4
3,076,204	+				-2.3
3,076,204	+				-1.2
3,076,204	+				+0.3
3,076,204	+				-1.5
3,076,204	+				-2.3
3,076,204	+				+0.5
3,076,204	+				+0.1
3,076,204	+				+0.5
3,076,204	+				-1.6
3,076,205	-				-0.2
3,076,205	-				-0.5
3,076,205	-				+0.8
3,076,205	-				+0.4
3,076,205	-				+1.4
3,076,205	-				+0.6
3,076,205	-				-0.1
3,076,205	-				+0.3
3,076,205	-				-0.1
3,076,205	-				-1.0
3,076,205	-				+0.1
3,076,205	-				-2.0
3,076,205	-				+0.5
3,076,205	-				-2.5
3,076,205	-				+0.4
3,076,230	+				-0.1
3,076,230	+				-1.3
3,076,230	+				-0.2
3,076,230	+				-0.4
3,076,230	+				-2.6
3,076,230	+				-0.2
3,076,230	+				-0.3
3,076,230	+				-0.5
3,076,231	-				-2.3
3,076,231	-				+0.1
3,076,231	-				-0.8
3,076,231	-				-0.7
3,076,388	-		EFB2_02947	0.34	-1.2
3,076,388	-		EFB2_02947	0.34	-0.7
3,076,388	-		EFB2_02947	0.34	-2.1
3,076,400	-		EFB2_02947	0.36	-1.5
3,076,428	+		EFB2_02947	0.40	+2.0
3,076,428	+		EFB2_02947	0.40	+0.7
3,076,428	+		EFB2_02947	0.40	+0.9
3,076,428	+		EFB2_02947	0.40	-2.0
3,076,428	+		EFB2_02947	0.40	-1.0
3,076,429	-		EFB2_02947	0.40	+0.5
3,076,429	-		EFB2_02947	0.40	-0.3
3,076,429	-		EFB2_02947	0.40	+0.1
3,076,429	-		EFB2_02947	0.40	+2.1
3,076,429	-		EFB2_02947	0.40	+1.3
3,076,442	+		EFB2_02947	0.42	+0.5
3,076,442	+		EFB2_02947	0.42	-0.7
3,076,443	-		EFB2_02947	0.42	+2.2
3,076,443	-		EFB2_02947	0.42	+0.1
3,076,443	-		EFB2_02947	0.42	+1.1
3,076,476	-		EFB2_02947	0.47	-1.0
3,076,504	+		EFB2_02947	0.52	-2.2
3,076,504	+		EFB2_02947	0.52	-3.3
3,076,504	+		EFB2_02947	0.52	-0.2
3,076,504	+		EFB2_02947	0.52	+0.5
3,076,504	+		EFB2_02947	0.52	+2.5
3,076,505	-		EFB2_02947	0.52	-1.9
3,076,505	-		EFB2_02947	0.52	-2.1
3,076,505	-		EFB2_02947	0.52	+1.9
3,076,505	-		EFB2_02947	0.52	-0.7
3,076,505	-		EFB2_02947	0.52	-1.6
3,076,613	+		EFB2_02947	0.69	+1.1
3,076,693	+		EFB2_02947	0.81	+0.5
3,076,693	+		EFB2_02947	0.81	-0.9
3,076,693	+		EFB2_02947	0.81	+0.9
3,076,693	+		EFB2_02947	0.81	-0.6
3,076,694	-		EFB2_02947	0.81	-2.1
3,076,694	-		EFB2_02947	0.81	-0.3
3,076,694	-		EFB2_02947	0.81	+1.0
3,076,694	-		EFB2_02947	0.81	+1.4
3,076,694	-		EFB2_02947	0.81	-0.2
3,076,694	-		EFB2_02947	0.81	+2.3
3,076,694	-		EFB2_02947	0.81	-0.9
3,076,705	+		EFB2_02947	0.83	+2.1
3,076,705	+		EFB2_02947	0.83	-0.8
3,076,770	+				+0.2
3,076,770	+				-0.7
3,076,770	+				+1.1
3,076,770	+				-2.0
3,076,771	-				-1.3
3,076,771	-				-0.1
3,076,771	-				-1.2
3,076,771	-				-2.6
3,076,784	+				-0.5
3,076,784	+				+0.2
3,076,784	+				+1.7
3,076,784	+				+1.7
3,076,784	+				-0.9
3,076,784	+				-0.1
3,076,784	+				+0.8
3,076,784	+				-0.0
3,076,784	+				+1.9
3,076,784	+				-0.8
3,076,784	+				-1.2
3,076,784	+				-2.2
3,076,784	+				+0.2
3,076,784	+				-3.0
3,076,784	+				+1.8
3,076,784	+				+0.1
3,076,784	+				-1.2
3,076,784	+				-1.6
3,076,784	+				+0.6
3,076,784	+				-0.1
3,076,784	+				+1.9
3,076,784	+				+1.7
3,076,784	+				-1.7
3,076,784	+				-0.7
3,076,784	+				+0.8
3,076,784	+				+1.3
3,076,784	+				+0.4
3,076,784	+				-1.8
3,076,784	+				-1.0
3,076,784	+				+0.9
3,076,784	+				-1.8
3,076,784	+				-0.8
3,076,784	+				+0.2
3,076,784	+				+1.3
3,076,784	+				-1.5
3,076,784	+				+0.1
3,076,784	+				+0.5
3,076,785	-				-2.6
3,076,785	-				+1.0
3,076,785	-				-0.9
3,076,785	-				+0.9
3,076,785	-				+0.8
3,076,785	-				-3.0
3,076,785	-				+1.0
3,076,785	-				-0.4
3,076,785	-				-0.5
3,076,785	-				-0.5
3,076,785	-				+0.3
3,076,785	-				-1.8
3,076,785	-				-2.9
3,076,785	-				+0.5
3,076,785	-				+2.3
3,076,785	-				+1.9
3,076,785	-				+1.9
3,076,785	-				+0.9
3,076,785	-				+2.1
3,076,785	-				+1.9
3,076,785	-				-0.7
3,076,785	-				-0.2
3,076,785	-				+1.2
3,076,785	-				-0.2
3,076,785	-				+0.9
3,076,785	-				+0.5
3,076,785	-				-2.3
3,076,785	-				+2.1
3,076,785	-				-3.3
3,076,785	-				-1.4
3,076,785	-				+1.8
3,076,785	-				+0.7
3,076,785	-				+0.6
3,076,785	-				-1.7
3,076,785	-				-0.5
3,076,786	+				-1.7
3,076,786	+				+1.3
3,076,786	+				-1.9
3,076,786	+				+1.3
3,076,786	+				-2.0
3,076,786	+				+1.0
3,076,786	+				+1.6
3,076,787	-				+0.9
3,076,787	-				+1.2
3,076,787	-				+0.9
3,076,787	-				+1.5
3,076,787	-				-2.0
3,076,787	-				+0.6
3,076,787	-				-0.4
3,076,787	-				-2.3
3,076,802	+				+0.7
3,076,803	-				-1.5
3,076,865	-		EFB2_02948	0.14	+3.9
3,076,865	-		EFB2_02948	0.14	-1.7
3,076,940	+		EFB2_02948	0.48	+0.1
3,076,942	+		EFB2_02948	0.49	+1.8
3,076,942	+		EFB2_02948	0.49	-1.2
3,076,942	+		EFB2_02948	0.49	+2.0
3,076,942	+		EFB2_02948	0.49	+2.0
3,076,942	+		EFB2_02948	0.49	+1.2
3,076,942	+		EFB2_02948	0.49	-0.2
3,076,942	+		EFB2_02948	0.49	-1.6
3,076,970	-		EFB2_02948	0.62	+0.7
3,076,970	-		EFB2_02948	0.62	-0.0
3,076,970	-		EFB2_02948	0.62	+1.9
3,076,970	-		EFB2_02948	0.62	+1.0
3,077,272	+		EFB2_02949	0.32	-0.0
3,077,272	+		EFB2_02949	0.32	+0.2
3,077,272	+		EFB2_02949	0.32	+2.5
3,077,272	+		EFB2_02949	0.32	-1.4
3,077,272	+		EFB2_02949	0.32	-1.0
3,077,272	+		EFB2_02949	0.32	+0.8
3,077,272	+		EFB2_02949	0.32	-0.4
3,077,272	+		EFB2_02949	0.32	-1.5
3,077,272	+		EFB2_02949	0.32	+1.1
3,077,272	+		EFB2_02949	0.32	+0.5
3,077,272	+		EFB2_02949	0.32	+1.1
3,077,272	+		EFB2_02949	0.32	+3.0
3,077,272	+		EFB2_02949	0.32	+1.9
3,077,272	+		EFB2_02949	0.32	-2.2
3,077,272	+		EFB2_02949	0.32	+0.5
3,077,272	+		EFB2_02949	0.32	-0.5
3,077,272	+		EFB2_02949	0.32	-0.5
3,077,305	-		EFB2_02949	0.39	+0.1
3,077,673	+		EFB2_02950	0.14	+1.4
3,077,676	+		EFB2_02950	0.14	-1.5
3,077,676	+		EFB2_02950	0.14	-0.9
3,077,676	+		EFB2_02950	0.14	+1.0
3,077,695	-		EFB2_02950	0.18	+1.1
3,077,695	-		EFB2_02950	0.18	+2.1
3,078,120	+				-0.9
3,078,265	+		EFB2_02951	0.36	-1.5
3,078,300	+		EFB2_02951	0.50	+0.5
3,078,300	+		EFB2_02951	0.50	+1.5
3,078,313	+		EFB2_02951	0.56	-0.0
3,078,478	-				-0.5
3,078,478	-				-2.7
3,078,478	-				-2.0
3,078,478	-				-0.0
3,078,478	-				-3.1
3,078,478	-				-0.1
3,078,478	-				-0.3