Strain Fitness in Escherichia fergusonii Becca around EFB2_01972

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
2,130,416	+		EFB2_01971	0.78	-2.1
2,130,438	+		EFB2_01971	0.80	+0.2
2,130,439	-		EFB2_01971	0.80	-0.2
2,130,457	+		EFB2_01971	0.81	-1.3
2,130,457	+		EFB2_01971	0.81	+1.3
2,130,457	+		EFB2_01971	0.81	-1.9
2,130,457	+		EFB2_01971	0.81	-1.7
2,130,458	-		EFB2_01971	0.81	-0.4
2,130,458	-		EFB2_01971	0.81	+0.6
2,130,458	-		EFB2_01971	0.81	-0.6
2,130,463	+		EFB2_01971	0.81	-1.3
2,130,463	+		EFB2_01971	0.81	-0.4
2,130,463	+		EFB2_01971	0.81	-0.6
2,130,463	+		EFB2_01971	0.81	+0.9
2,130,464	-		EFB2_01971	0.82	-2.5
2,130,464	-		EFB2_01971	0.82	-1.7
2,130,465	+		EFB2_01971	0.82	-0.1
2,130,465	+		EFB2_01971	0.82	-1.6
2,130,465	+		EFB2_01971	0.82	-1.7
2,130,465	+		EFB2_01971	0.82	-0.3
2,130,465	+		EFB2_01971	0.82	+1.9
2,130,465	+		EFB2_01971	0.82	-2.8
2,130,465	+		EFB2_01971	0.82	+0.6
2,130,465	+		EFB2_01971	0.82	-2.7
2,130,466	-		EFB2_01971	0.82	-0.8
2,130,466	-		EFB2_01971	0.82	-0.8
2,130,466	-		EFB2_01971	0.82	-0.6
2,130,466	-		EFB2_01971	0.82	+1.6
2,130,466	-		EFB2_01971	0.82	-1.3
2,130,466	-		EFB2_01971	0.82	+0.0
2,130,466	-		EFB2_01971	0.82	-0.0
2,130,466	-		EFB2_01971	0.82	-2.9
2,130,584	-		EFB2_01971	0.89	+2.6
2,130,589	-		EFB2_01971	0.90	-1.7
2,130,589	-		EFB2_01971	0.90	-2.0
2,130,589	-		EFB2_01971	0.90	-0.1
2,130,589	-		EFB2_01971	0.90	-0.4
2,130,648	+				+2.0
2,130,651	+				-1.9
2,130,651	+				-2.0
2,130,651	+				-1.3
2,130,652	-				-2.4
2,130,652	-				-1.0
2,130,652	-				-3.2
2,130,658	-				-0.3
2,130,658	-				-1.8
2,130,669	-				+0.6
2,130,748	+				+1.2
2,130,760	+				+0.9
2,130,764	+				-2.7
2,130,764	+				+0.5
2,130,764	+				-0.1
2,130,764	+				+0.9
2,130,764	+				-0.4
2,130,765	-				-2.1
2,130,765	-				+1.2
2,130,765	-				-0.7
2,130,765	-				-0.7
2,130,769	+				-2.0
2,130,769	+				-3.2
2,130,770	-				-1.1
2,130,870	-				-0.8
2,130,877	+				-1.6
2,130,878	-				+2.0
2,130,880	-				-0.4
2,130,880	-				-1.1
2,130,880	-				-0.6
2,130,880	-				-1.7
2,130,880	-				-1.4
2,130,880	-				-1.2
2,130,880	-				-0.0
2,130,880	-				+0.5
2,130,915	-				+0.9
2,130,932	-				-0.2
2,130,947	+				-0.1
2,130,948	-				+1.5
2,131,133	-				+1.4
2,131,313	-				-1.7
2,131,454	+		EFB2_01972	0.22	+0.2
2,131,494	+		EFB2_01972	0.35	-1.1
2,131,495	-		EFB2_01972	0.35	+2.2
2,131,515	-		EFB2_01972	0.42	-1.0
2,131,543	-		EFB2_01972	0.51	+0.6
2,131,543	-		EFB2_01972	0.51	+0.2
2,131,748	+				-1.5
2,131,890	+				+2.2
2,131,921	-				+1.2
2,132,008	-				+2.5
2,132,054	-				-0.1
2,132,087	-				+0.2
2,132,146	+				-1.0
2,132,146	+				+0.6
2,132,146	+				+1.0
2,132,147	-		EFB2_01973	0.10	+1.2
2,132,149	+		EFB2_01973	0.10	+0.1
2,132,149	+		EFB2_01973	0.10	+0.3
2,132,149	+		EFB2_01973	0.10	-0.2
2,132,176	+		EFB2_01973	0.15	-0.3
2,132,193	-		EFB2_01973	0.18	+0.1
2,132,243	+		EFB2_01973	0.27	+5.3
2,132,243	+		EFB2_01973	0.27	-0.9
2,132,257	+		EFB2_01973	0.30	+0.0
2,132,257	+		EFB2_01973	0.30	+0.7
2,132,257	+		EFB2_01973	0.30	+1.1
2,132,258	-		EFB2_01973	0.30	+1.4
2,132,258	-		EFB2_01973	0.30	-1.2
2,132,271	-		EFB2_01973	0.32	+0.8
2,132,280	+		EFB2_01973	0.34	-0.5
2,132,280	+		EFB2_01973	0.34	+0.6
2,132,280	+		EFB2_01973	0.34	+1.1
2,132,280	+		EFB2_01973	0.34	+0.2
2,132,280	+		EFB2_01973	0.34	-0.2
2,132,280	+		EFB2_01973	0.34	+1.3
2,132,281	-		EFB2_01973	0.34	+0.3
2,132,281	-		EFB2_01973	0.34	-1.1
2,132,300	+		EFB2_01973	0.37	-1.9
2,132,315	+		EFB2_01973	0.40	+2.0
2,132,316	-		EFB2_01973	0.40	-2.5
2,132,351	+		EFB2_01973	0.47	+0.1
2,132,351	+		EFB2_01973	0.47	-1.7
2,132,352	-		EFB2_01973	0.47	+0.6
2,132,352	-		EFB2_01973	0.47	-1.9
2,132,356	+		EFB2_01973	0.47	-0.8
2,132,356	+		EFB2_01973	0.47	+0.2
2,132,356	+		EFB2_01973	0.47	-1.1
2,132,356	+		EFB2_01973	0.47	-0.1
2,132,356	+		EFB2_01973	0.47	-0.4
2,132,356	+		EFB2_01973	0.47	-2.5
2,132,356	+		EFB2_01973	0.47	+0.3
2,132,357	-		EFB2_01973	0.48	+1.5
2,132,357	-		EFB2_01973	0.48	-2.9
2,132,357	-		EFB2_01973	0.48	+0.7
2,132,378	+		EFB2_01973	0.51	+1.0
2,132,402	+		EFB2_01973	0.56	+0.1
2,132,402	+		EFB2_01973	0.56	-1.1
2,132,402	+		EFB2_01973	0.56	+0.6
2,132,403	-		EFB2_01973	0.56	+0.2
2,132,403	-		EFB2_01973	0.56	-0.1
2,132,420	+		EFB2_01973	0.59	-3.4
2,132,421	-		EFB2_01973	0.59	-1.7
2,132,463	-		EFB2_01973	0.67	-1.4
2,132,469	+		EFB2_01973	0.68	-0.2
2,132,469	+		EFB2_01973	0.68	-1.6
2,132,469	+		EFB2_01973	0.68	+1.3
2,132,469	+		EFB2_01973	0.68	+0.9
2,132,469	+		EFB2_01973	0.68	-0.5
2,132,469	+		EFB2_01973	0.68	+0.9
2,132,469	+		EFB2_01973	0.68	-0.8
2,132,469	+		EFB2_01973	0.68	+2.2
2,132,469	+		EFB2_01973	0.68	-0.1
2,132,470	-		EFB2_01973	0.68	+3.2
2,132,470	-		EFB2_01973	0.68	-1.4
2,132,470	-		EFB2_01973	0.68	-0.0
2,132,470	-		EFB2_01973	0.68	+0.8
2,132,470	-		EFB2_01973	0.68	+0.3
2,132,470	-		EFB2_01973	0.68	+0.2
2,132,522	+		EFB2_01973	0.77	-2.4
2,132,529	+		EFB2_01973	0.78	-2.0
2,132,530	-		EFB2_01973	0.79	-1.4
2,132,534	+		EFB2_01973	0.79	-1.0
2,132,534	+		EFB2_01973	0.79	+1.0
2,132,534	+		EFB2_01973	0.79	+1.4
2,132,534	+		EFB2_01973	0.79	-0.4
2,132,534	+		EFB2_01973	0.79	-0.3
2,132,534	+		EFB2_01973	0.79	-0.3
2,132,534	+		EFB2_01973	0.79	+0.9
2,132,534	+		EFB2_01973	0.79	+0.5
2,132,534	+		EFB2_01973	0.79	+0.4
2,132,535	-		EFB2_01973	0.80	-0.1
2,132,535	-		EFB2_01973	0.80	-1.0
2,132,535	-		EFB2_01973	0.80	+0.9
2,132,535	-		EFB2_01973	0.80	+1.0
2,132,537	+		EFB2_01973	0.80	+2.2
2,132,537	+		EFB2_01973	0.80	+0.7
2,132,537	+		EFB2_01973	0.80	+0.3
2,132,538	-		EFB2_01973	0.80	+0.1
2,132,538	-		EFB2_01973	0.80	-2.5
2,132,538	-		EFB2_01973	0.80	+0.2
2,132,538	-		EFB2_01973	0.80	-0.8
2,132,538	-		EFB2_01973	0.80	-2.3
2,132,538	-		EFB2_01973	0.80	-0.4
2,132,558	+		EFB2_01973	0.84	-1.9
2,132,591	+		EFB2_01973	0.90	-1.8
2,132,592	-		EFB2_01973	0.90	-2.3
2,132,606	+				-1.2
2,132,606	+				-2.5
2,132,606	+				-1.1
2,132,606	+				+2.0
2,132,606	+				-1.9
2,132,606	+				-2.1
2,132,606	+				-0.1
2,132,606	+				+0.6
2,132,607	-				+2.4
2,132,607	-				+0.8
2,132,607	-				+1.6
2,132,607	-				+1.1
2,132,607	-				+1.4
2,132,607	-				-0.4
2,132,621	+				+1.2
2,132,621	+				-1.8
2,132,621	+				-0.9
2,132,622	-				-0.4
2,132,622	-				-2.5
2,132,622	-				-0.4
2,132,622	-				-0.1
2,132,622	-				-2.0
2,132,622	-				+1.6
2,132,624	+				-1.8
2,132,624	+				+0.6
2,132,624	+				+1.5
2,132,624	+				-0.6
2,132,624	+				-0.9
2,132,624	+				-0.4
2,132,624	+				+0.1
2,132,624	+				+0.7
2,132,624	+				-2.4
2,132,624	+				-0.6
2,132,624	+				-1.4
2,132,624	+				-0.1
2,132,624	+				-0.8
2,132,625	-				+0.5
2,132,625	-				-2.5
2,132,625	-				-1.8
2,132,625	-				-3.0
2,132,629	+				+1.6
2,132,629	+				-2.7
2,132,630	-				-2.8
2,132,630	-				-2.3
2,132,642	+				+1.5
2,132,642	+				-1.3
2,132,643	-				-0.2
2,132,646	+				+1.8
2,132,678	-				-0.6