Strain Fitness in Escherichia fergusonii Becca around EFB2_01195

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
1,252,197	+		EFB2_01194	0.11	+0.2
1,252,197	+		EFB2_01194	0.11	+1.2
1,252,197	+		EFB2_01194	0.11	-1.0
1,252,197	+		EFB2_01194	0.11	+0.6
1,252,197	+		EFB2_01194	0.11	+1.0
1,252,197	+		EFB2_01194	0.11	+0.5
1,252,198	-		EFB2_01194	0.11	+2.9
1,252,198	-		EFB2_01194	0.11	+0.6
1,252,198	-		EFB2_01194	0.11	-0.9
1,252,198	-		EFB2_01194	0.11	-0.9
1,252,295	+		EFB2_01194	0.20	+0.8
1,252,296	-		EFB2_01194	0.20	-2.6
1,252,336	+		EFB2_01194	0.24	+0.5
1,252,337	-		EFB2_01194	0.24	-1.3
1,252,441	+		EFB2_01194	0.33	-1.2
1,252,441	+		EFB2_01194	0.33	+0.1
1,252,441	+		EFB2_01194	0.33	+2.1
1,252,441	+		EFB2_01194	0.33	+1.4
1,252,442	-		EFB2_01194	0.33	+0.5
1,252,442	-		EFB2_01194	0.33	+1.2
1,252,442	-		EFB2_01194	0.33	+1.1
1,252,442	-		EFB2_01194	0.33	+1.5
1,252,442	-		EFB2_01194	0.33	+0.3
1,252,459	+		EFB2_01194	0.35	-2.4
1,252,460	-		EFB2_01194	0.35	+0.4
1,252,495	+		EFB2_01194	0.38	-0.4
1,252,495	+		EFB2_01194	0.38	-0.9
1,252,495	+		EFB2_01194	0.38	+1.3
1,252,495	+		EFB2_01194	0.38	+1.2
1,252,495	+		EFB2_01194	0.38	+1.0
1,252,495	+		EFB2_01194	0.38	+1.1
1,252,495	+		EFB2_01194	0.38	-1.3
1,252,495	+		EFB2_01194	0.38	+0.3
1,252,495	+		EFB2_01194	0.38	+0.2
1,252,495	+		EFB2_01194	0.38	-1.0
1,252,496	-		EFB2_01194	0.38	+0.7
1,252,496	-		EFB2_01194	0.38	-0.0
1,252,496	-		EFB2_01194	0.38	+0.7
1,252,496	-		EFB2_01194	0.38	+1.0
1,252,496	-		EFB2_01194	0.38	+2.1
1,252,496	-		EFB2_01194	0.38	-1.0
1,252,496	-		EFB2_01194	0.38	+1.5
1,252,551	+		EFB2_01194	0.43	-1.0
1,252,551	+		EFB2_01194	0.43	-2.8
1,252,557	+		EFB2_01194	0.43	-3.1
1,252,557	+		EFB2_01194	0.43	+0.6
1,252,557	+		EFB2_01194	0.43	+3.4
1,252,558	-		EFB2_01194	0.44	-3.3
1,252,559	+		EFB2_01194	0.44	-0.7
1,252,559	+		EFB2_01194	0.44	-0.5
1,252,559	+		EFB2_01194	0.44	-2.3
1,252,559	+		EFB2_01194	0.44	+0.3
1,252,559	+		EFB2_01194	0.44	+0.5
1,252,560	-		EFB2_01194	0.44	+0.9
1,252,560	-		EFB2_01194	0.44	+3.3
1,252,560	-		EFB2_01194	0.44	-2.7
1,252,581	+		EFB2_01194	0.46	+1.4
1,252,581	+		EFB2_01194	0.46	+2.2
1,252,581	+		EFB2_01194	0.46	+0.3
1,252,581	+		EFB2_01194	0.46	+1.5
1,252,582	-		EFB2_01194	0.46	+1.9
1,252,582	-		EFB2_01194	0.46	+1.1
1,252,621	-		EFB2_01194	0.49	-1.2
1,252,662	+		EFB2_01194	0.53	+0.5
1,252,662	+		EFB2_01194	0.53	-2.1
1,252,662	+		EFB2_01194	0.53	+1.3
1,252,662	+		EFB2_01194	0.53	-0.9
1,252,662	+		EFB2_01194	0.53	+0.3
1,252,662	+		EFB2_01194	0.53	+1.0
1,252,663	-		EFB2_01194	0.53	+1.3
1,252,663	-		EFB2_01194	0.53	+1.5
1,252,663	-		EFB2_01194	0.53	+1.0
1,252,663	-		EFB2_01194	0.53	+0.4
1,252,663	-		EFB2_01194	0.53	+1.1
1,252,663	-		EFB2_01194	0.53	+1.2
1,252,663	-		EFB2_01194	0.53	+0.2
1,252,683	-		EFB2_01194	0.55	+0.1
1,252,756	+		EFB2_01194	0.61	+0.6
1,252,757	-		EFB2_01194	0.61	+0.9
1,252,768	+		EFB2_01194	0.62	-0.7
1,252,768	+		EFB2_01194	0.62	+0.7
1,252,769	-		EFB2_01194	0.62	-0.0
1,252,769	-		EFB2_01194	0.62	+2.3
1,252,769	-		EFB2_01194	0.62	+0.2
1,252,805	-		EFB2_01194	0.66	+0.8
1,252,824	-		EFB2_01194	0.67	+1.3
1,252,886	-		EFB2_01194	0.73	+1.3
1,252,908	+		EFB2_01194	0.75	-0.2
1,252,908	+		EFB2_01194	0.75	-3.0
1,252,909	-		EFB2_01194	0.75	-0.2
1,252,909	-		EFB2_01194	0.75	+0.4
1,252,909	-		EFB2_01194	0.75	+0.7
1,252,959	+		EFB2_01194	0.79	+0.2
1,252,959	+		EFB2_01194	0.79	+2.0
1,252,959	+		EFB2_01194	0.79	+1.0
1,252,959	+		EFB2_01194	0.79	+0.3
1,252,972	+		EFB2_01194	0.80	+1.0
1,252,972	+		EFB2_01194	0.80	-0.8
1,253,002	-		EFB2_01194	0.83	-1.8
1,253,059	-		EFB2_01194	0.88	-2.2
1,253,059	-		EFB2_01194	0.88	+1.1
1,253,079	+				+0.0
1,253,079	+				-0.8
1,253,080	-				-2.4
1,253,080	-				+0.5
1,253,080	-				+0.1
1,253,105	+				-1.5
1,253,105	+				-0.1
1,253,105	+				-1.9
1,253,105	+				+0.5
1,253,105	+				+0.3
1,253,105	+				+0.2
1,253,105	+				-2.0
1,253,105	+				+0.5
1,253,105	+				+0.9
1,253,106	-				-1.3
1,253,106	-				+0.0
1,253,106	-				+0.1
1,253,106	-				-1.7
1,253,106	-				+0.5
1,253,144	-				-3.3
1,253,144	-				-1.3
1,253,144	-				-1.2
1,253,144	-				+0.2
1,253,192	-				-2.2
1,253,206	+				-2.1
1,253,206	+				+0.3
1,253,206	+				+1.0
1,253,206	+				-0.4
1,253,207	-				+2.1
1,253,207	-				-1.2
1,253,207	-				-0.0
1,253,207	-				+2.2
1,253,207	-				-0.2
1,253,207	-				-1.0
1,253,207	-				+2.3
1,253,207	-				-1.6
1,253,207	-				+0.7
1,253,251	-		EFB2_01195	0.22	-1.2
1,253,285	+		EFB2_01195	0.35	+0.2
1,253,285	+		EFB2_01195	0.35	+1.3
1,253,285	+		EFB2_01195	0.35	-0.1
1,253,285	+		EFB2_01195	0.35	-0.2
1,253,285	+		EFB2_01195	0.35	+1.5
1,253,286	-		EFB2_01195	0.35	+0.3
1,253,286	-		EFB2_01195	0.35	-0.0
1,253,286	-		EFB2_01195	0.35	+2.5
1,253,286	-		EFB2_01195	0.35	+0.1
1,253,286	-		EFB2_01195	0.35	-1.3
1,253,286	-		EFB2_01195	0.35	-0.4
1,253,286	-		EFB2_01195	0.35	-0.7
1,253,289	+		EFB2_01195	0.36	-1.6
1,253,289	+		EFB2_01195	0.36	+1.1
1,253,289	+		EFB2_01195	0.36	+1.5
1,253,289	+		EFB2_01195	0.36	+1.7
1,253,289	+		EFB2_01195	0.36	+2.4
1,253,289	+		EFB2_01195	0.36	-0.2
1,253,290	-		EFB2_01195	0.37	+0.3
1,253,290	-		EFB2_01195	0.37	-0.8
1,253,290	-		EFB2_01195	0.37	+2.4
1,253,290	-		EFB2_01195	0.37	+0.6
1,253,290	-		EFB2_01195	0.37	-0.2
1,253,290	-		EFB2_01195	0.37	-1.2
1,253,290	-		EFB2_01195	0.37	-0.5
1,253,373	+		EFB2_01195	0.67	+1.9
1,253,373	+		EFB2_01195	0.67	+0.5
1,253,374	-		EFB2_01195	0.67	-0.4
1,253,374	-		EFB2_01195	0.67	+1.2
1,253,374	-		EFB2_01195	0.67	-2.0
1,253,374	-		EFB2_01195	0.67	-0.3
1,253,374	-		EFB2_01195	0.67	+0.7
1,253,436	+				-0.0
1,253,436	+				+0.3
1,253,436	+				-0.5
1,253,436	+				+0.4
1,253,436	+				+0.7
1,253,436	+				-0.3
1,253,437	-				+1.2
1,253,437	-				-3.1
1,253,437	-				-0.1
1,253,454	+				-0.5
1,253,455	-				+0.9
1,253,455	-				-1.6
1,253,455	-				-0.2
1,253,455	-				-0.1
1,253,455	-				+1.3
1,253,521	+				+0.5
1,253,521	+				-2.2
1,253,521	+				+0.3
1,253,522	-				+2.5
1,253,522	-				-1.0
1,253,522	-				-2.0
1,253,644	+		EFB2_01196	0.22	+0.7
1,253,644	+		EFB2_01196	0.22	-1.0
1,253,644	+		EFB2_01196	0.22	-1.8
1,253,644	+		EFB2_01196	0.22	-0.3
1,253,644	+		EFB2_01196	0.22	+0.5
1,253,645	-		EFB2_01196	0.22	-0.6
1,253,645	-		EFB2_01196	0.22	+0.8
1,253,653	-		EFB2_01196	0.23	-0.5
1,253,768	-		EFB2_01196	0.36	+0.1
1,253,768	-		EFB2_01196	0.36	-2.5
1,253,768	-		EFB2_01196	0.36	+0.9
1,253,836	+		EFB2_01196	0.44	+0.2
1,253,917	+		EFB2_01196	0.53	-1.6
1,253,917	+		EFB2_01196	0.53	-1.9
1,253,917	+		EFB2_01196	0.53	+1.0
1,253,917	+		EFB2_01196	0.53	-1.8
1,253,918	-		EFB2_01196	0.53	-0.5
1,253,918	-		EFB2_01196	0.53	-0.2
1,253,918	-		EFB2_01196	0.53	-1.9
1,253,951	+		EFB2_01196	0.57	+0.9
1,253,951	+		EFB2_01196	0.57	+2.0
1,253,951	+		EFB2_01196	0.57	-0.7
1,253,952	-		EFB2_01196	0.57	-0.1
1,253,952	-		EFB2_01196	0.57	+0.4
1,253,952	-		EFB2_01196	0.57	-1.2
1,253,952	-		EFB2_01196	0.57	+1.3
1,254,061	+		EFB2_01196	0.70	+0.6
1,254,196	+		EFB2_01196	0.85	+0.4
1,254,268	+				-1.0
1,254,268	+				-0.5
1,254,268	+				+1.6
1,254,268	+				-4.0
1,254,268	+				+1.0
1,254,268	+				-4.2
1,254,268	+				-0.1
1,254,268	+				-2.8
1,254,268	+				-2.0
1,254,268	+				-0.4
1,254,269	-				-0.3
1,254,269	-				+0.5
1,254,269	-				-2.0
1,254,269	-				-0.9
1,254,269	-				-3.0
1,254,269	-				+0.0
1,254,269	-				+1.6
1,254,286	+				-3.0
1,254,288	+				-0.3
1,254,288	+				-0.5
1,254,288	+				+0.3
1,254,288	+				-0.3
1,254,288	+				-2.5
1,254,288	+				-1.7
1,254,288	+				-0.0
1,254,288	+				-0.4
1,254,288	+				+1.0
1,254,288	+				-0.8
1,254,288	+				-1.6
1,254,288	+				-0.4
1,254,288	+				+1.1
1,254,288	+				+0.6
1,254,288	+				-0.0
1,254,288	+				-0.5
1,254,288	+				-3.2
1,254,288	+				+0.8
1,254,289	-				-1.7
1,254,289	-				-0.4
1,254,289	-				+1.0
1,254,289	-				+0.9
1,254,289	-				-2.0
1,254,289	-				+3.2
1,254,289	-				-0.2
1,254,289	-				+0.1
1,254,289	-				+1.1
1,254,289	-				-0.4
1,254,319	+				-0.0
1,254,319	+				+0.9
1,254,319	+				+0.6
1,254,319	+				-0.3
1,254,319	+				-4.0
1,254,319	+				-0.7
1,254,319	+				-1.7
1,254,319	+				-2.3
1,254,320	-				+1.1
1,254,320	-				-1.4
1,254,320	-				-0.9
1,254,320	-				-3.5
1,254,320	-				+1.0
1,254,320	-				+0.5
1,254,320	-				-0.6
1,254,320	-				+0.4
1,254,320	-				+0.4
1,254,320	-				-0.3
1,254,341	+				-1.0
1,254,341	+				-1.2
1,254,341	+				+0.0
1,254,341	+				+1.1
1,254,341	+				-1.6
1,254,341	+				-1.2
1,254,341	+				+0.9
1,254,341	+				-0.1
1,254,341	+				-1.6
1,254,342	-				-1.6
1,254,342	-				-1.3
1,254,342	-				+0.3
1,254,342	-				-1.3
1,254,342	-				-2.7
1,254,342	-				-0.8
1,254,342	-				+2.1
1,254,342	-				-0.5
1,254,348	-				+1.0
1,254,363	-				-1.3
1,254,363	-				+1.9
1,254,363	-				+0.8
1,254,386	+		EFB2_01197	0.16	-0.1
1,254,386	+		EFB2_01197	0.16	-0.5
1,254,386	+		EFB2_01197	0.16	-0.7
1,254,386	+		EFB2_01197	0.16	+1.0
1,254,386	+		EFB2_01197	0.16	-0.9
1,254,387	-		EFB2_01197	0.17	-2.6
1,254,387	-		EFB2_01197	0.17	-1.2
1,254,387	-		EFB2_01197	0.17	+0.5
1,254,387	-		EFB2_01197	0.17	-0.6
1,254,434	+		EFB2_01197	0.30	+0.2
1,254,435	-		EFB2_01197	0.30	+0.8
1,254,444	+		EFB2_01197	0.33	-2.7
1,254,444	+		EFB2_01197	0.33	-0.5
1,254,444	+		EFB2_01197	0.33	+1.1
1,254,444	+		EFB2_01197	0.33	+0.5
1,254,444	+		EFB2_01197	0.33	+0.8
1,254,444	+		EFB2_01197	0.33	-1.6
1,254,444	+		EFB2_01197	0.33	+0.4
1,254,444	+		EFB2_01197	0.33	+1.3
1,254,444	+		EFB2_01197	0.33	+0.7
1,254,444	+		EFB2_01197	0.33	+0.5
1,254,444	+		EFB2_01197	0.33	-0.3
1,254,444	+		EFB2_01197	0.33	+0.1
1,254,444	+		EFB2_01197	0.33	+1.9
1,254,444	+		EFB2_01197	0.33	-3.2
1,254,444	+		EFB2_01197	0.33	-0.0
1,254,444	+		EFB2_01197	0.33	-0.5
1,254,444	+		EFB2_01197	0.33	-0.3
1,254,444	+		EFB2_01197	0.33	-0.2
1,254,444	+		EFB2_01197	0.33	+1.1
1,254,444	+		EFB2_01197	0.33	+2.4
1,254,444	+		EFB2_01197	0.33	+1.3
1,254,445	-		EFB2_01197	0.33	-1.9
1,254,445	-		EFB2_01197	0.33	-0.5
1,254,445	-		EFB2_01197	0.33	-3.2
1,254,445	-		EFB2_01197	0.33	-3.6
1,254,445	-		EFB2_01197	0.33	+0.1
1,254,445	-		EFB2_01197	0.33	-1.0
1,254,445	-		EFB2_01197	0.33	+1.3
1,254,445	-		EFB2_01197	0.33	-1.2
1,254,445	-		EFB2_01197	0.33	+1.2
1,254,445	-		EFB2_01197	0.33	+0.3
1,254,445	-		EFB2_01197	0.33	-2.8
1,254,445	-		EFB2_01197	0.33	+1.5
1,254,445	-		EFB2_01197	0.33	-2.1
1,254,445	-		EFB2_01197	0.33	+0.3
1,254,445	-		EFB2_01197	0.33	+0.3
1,254,445	-		EFB2_01197	0.33	-0.3
1,254,445	-		EFB2_01197	0.33	+0.6
1,254,445	-		EFB2_01197	0.33	-3.8
1,254,445	-		EFB2_01197	0.33	-0.3
1,254,445	-		EFB2_01197	0.33	-2.5
1,254,445	-		EFB2_01197	0.33	+0.3
1,254,445	-		EFB2_01197	0.33	+0.0
1,254,445	-		EFB2_01197	0.33	+1.6
1,254,445	-		EFB2_01197	0.33	+0.2
1,254,445	-		EFB2_01197	0.33	-2.4