Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04765

Experiment: Columbia 1 x (C) complex media

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_04764 and BACOVA_04765 are separated by 3 nucleotidesBACOVA_04765 and BACOVA_04766 are separated by 1 nucleotidesBACOVA_04766 and BACOVA_04767 are separated by 26 nucleotides BACOVA_04764: BACOVA_04764 - hypothetical protein, at 117,929 to 120,115 _04764 BACOVA_04765: BACOVA_04765 - hypothetical protein, at 120,119 to 120,865 _04765 BACOVA_04766: BACOVA_04766 - hypothetical protein, at 120,867 to 121,523 _04766 BACOVA_04767: BACOVA_04767 - hypothetical protein, at 121,550 to 122,074 _04767 Position (kb) 120 121Strain fitness (log2 ratio) -2 -1 0 1 2at 119.243 kb on - strand, within BACOVA_04764at 119.251 kb on - strand, within BACOVA_04764at 119.251 kb on - strand, within BACOVA_04764at 119.283 kb on + strand, within BACOVA_04764at 119.358 kb on + strand, within BACOVA_04764at 119.359 kb on - strand, within BACOVA_04764at 119.364 kb on + strand, within BACOVA_04764at 119.365 kb on - strand, within BACOVA_04764at 119.367 kb on + strand, within BACOVA_04764at 119.367 kb on + strand, within BACOVA_04764at 119.368 kb on - strand, within BACOVA_04764at 119.398 kb on - strand, within BACOVA_04764at 119.404 kb on - strand, within BACOVA_04764at 119.404 kb on - strand, within BACOVA_04764at 119.404 kb on - strand, within BACOVA_04764at 119.431 kb on + strand, within BACOVA_04764at 119.454 kb on - strand, within BACOVA_04764at 119.454 kb on - strand, within BACOVA_04764at 119.554 kb on - strand, within BACOVA_04764at 119.554 kb on - strand, within BACOVA_04764at 119.571 kb on - strand, within BACOVA_04764at 119.573 kb on - strand, within BACOVA_04764at 119.573 kb on - strand, within BACOVA_04764at 119.582 kb on - strand, within BACOVA_04764at 119.584 kb on - strand, within BACOVA_04764at 119.697 kb on - strand, within BACOVA_04764at 119.731 kb on - strand, within BACOVA_04764at 119.740 kb on + strand, within BACOVA_04764at 119.757 kb on + strand, within BACOVA_04764at 119.757 kb on + strand, within BACOVA_04764at 119.758 kb on - strand, within BACOVA_04764at 119.785 kb on - strand, within BACOVA_04764at 119.834 kb on + strand, within BACOVA_04764at 119.928 kb on + strandat 119.929 kb on - strandat 119.990 kb on + strandat 120.030 kb on + strandat 120.031 kb on - strandat 120.059 kb on - strandat 120.060 kb on + strandat 120.078 kb on - strandat 120.084 kb on + strandat 120.095 kb on + strandat 120.096 kb on - strandat 120.131 kb on + strandat 120.150 kb on + strandat 120.264 kb on + strand, within BACOVA_04765at 120.264 kb on + strand, within BACOVA_04765at 120.264 kb on + strand, within BACOVA_04765at 120.297 kb on + strand, within BACOVA_04765at 120.297 kb on + strand, within BACOVA_04765at 120.298 kb on - strand, within BACOVA_04765at 120.333 kb on - strand, within BACOVA_04765at 120.334 kb on + strand, within BACOVA_04765at 120.334 kb on + strand, within BACOVA_04765at 120.334 kb on + strand, within BACOVA_04765at 120.448 kb on - strand, within BACOVA_04765at 120.448 kb on - strand, within BACOVA_04765at 120.516 kb on - strand, within BACOVA_04765at 120.576 kb on + strand, within BACOVA_04765at 120.680 kb on - strand, within BACOVA_04765at 120.793 kb on - strandat 120.798 kb on - strandat 120.824 kb on + strandat 120.829 kb on + strandat 120.841 kb on + strandat 120.841 kb on + strandat 120.842 kb on - strandat 120.846 kb on - strandat 120.846 kb on - strandat 120.885 kb on + strandat 120.886 kb on - strandat 120.914 kb on - strandat 121.012 kb on + strand, within BACOVA_04766at 121.012 kb on + strand, within BACOVA_04766at 121.013 kb on - strand, within BACOVA_04766at 121.013 kb on - strand, within BACOVA_04766at 121.081 kb on + strand, within BACOVA_04766at 121.081 kb on + strand, within BACOVA_04766at 121.112 kb on + strand, within BACOVA_04766at 121.114 kb on + strand, within BACOVA_04766at 121.114 kb on + strand, within BACOVA_04766at 121.186 kb on + strand, within BACOVA_04766at 121.378 kb on + strand, within BACOVA_04766at 121.378 kb on + strand, within BACOVA_04766at 121.388 kb on - strand, within BACOVA_04766at 121.418 kb on + strand, within BACOVA_04766at 121.418 kb on + strand, within BACOVA_04766at 121.419 kb on - strand, within BACOVA_04766at 121.419 kb on - strand, within BACOVA_04766at 121.446 kb on + strand, within BACOVA_04766at 121.518 kb on + strandat 121.518 kb on + strandat 121.519 kb on - strandat 121.610 kb on + strand, within BACOVA_04767at 121.610 kb on + strand, within BACOVA_04767at 121.782 kb on + strand, within BACOVA_04767at 121.837 kb on + strand, within BACOVA_04767

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Columbia 1 x (C) complex media
remove
119,243 - BACOVA_04764 0.60 +0.4
119,251 - BACOVA_04764 0.60 -1.2
119,251 - BACOVA_04764 0.60 +0.2
119,283 + BACOVA_04764 0.62 +0.1
119,358 + BACOVA_04764 0.65 -0.8
119,359 - BACOVA_04764 0.65 -1.4
119,364 + BACOVA_04764 0.66 -0.6
119,365 - BACOVA_04764 0.66 +0.7
119,367 + BACOVA_04764 0.66 -0.4
119,367 + BACOVA_04764 0.66 -1.7
119,368 - BACOVA_04764 0.66 +0.6
119,398 - BACOVA_04764 0.67 +0.1
119,404 - BACOVA_04764 0.67 +0.5
119,404 - BACOVA_04764 0.67 +1.3
119,404 - BACOVA_04764 0.67 -0.0
119,431 + BACOVA_04764 0.69 +0.9
119,454 - BACOVA_04764 0.70 +0.4
119,454 - BACOVA_04764 0.70 +0.4
119,554 - BACOVA_04764 0.74 -0.1
119,554 - BACOVA_04764 0.74 +1.0
119,571 - BACOVA_04764 0.75 +0.5
119,573 - BACOVA_04764 0.75 -1.0
119,573 - BACOVA_04764 0.75 -1.1
119,582 - BACOVA_04764 0.76 -0.6
119,584 - BACOVA_04764 0.76 -0.1
119,697 - BACOVA_04764 0.81 +1.0
119,731 - BACOVA_04764 0.82 +0.4
119,740 + BACOVA_04764 0.83 -0.7
119,757 + BACOVA_04764 0.84 -0.1
119,757 + BACOVA_04764 0.84 -1.2
119,758 - BACOVA_04764 0.84 +0.7
119,785 - BACOVA_04764 0.85 +0.2
119,834 + BACOVA_04764 0.87 +1.0
119,928 + -1.3
119,929 - -0.4
119,990 + -1.5
120,030 + -0.8
120,031 - +0.6
120,059 - +0.3
120,060 + -0.8
120,078 - +0.5
120,084 + -2.3
120,095 + +0.1
120,096 - -0.6
120,131 + +0.1
120,150 + -0.4
120,264 + BACOVA_04765 0.19 -1.8
120,264 + BACOVA_04765 0.19 +0.0
120,264 + BACOVA_04765 0.19 +1.9
120,297 + BACOVA_04765 0.24 +1.4
120,297 + BACOVA_04765 0.24 -0.8
120,298 - BACOVA_04765 0.24 -1.5
120,333 - BACOVA_04765 0.29 -0.3
120,334 + BACOVA_04765 0.29 +0.2
120,334 + BACOVA_04765 0.29 -0.5
120,334 + BACOVA_04765 0.29 +0.2
120,448 - BACOVA_04765 0.44 +1.0
120,448 - BACOVA_04765 0.44 +1.9
120,516 - BACOVA_04765 0.53 +0.5
120,576 + BACOVA_04765 0.61 +0.6
120,680 - BACOVA_04765 0.75 -0.2
120,793 - -0.2
120,798 - -0.0
120,824 + -0.4
120,829 + +0.1
120,841 + +0.3
120,841 + -0.9
120,842 - +0.3
120,846 - +1.0
120,846 - +0.5
120,885 + +0.1
120,886 - -0.5
120,914 - +1.1
121,012 + BACOVA_04766 0.22 -0.6
121,012 + BACOVA_04766 0.22 +1.0
121,013 - BACOVA_04766 0.22 -0.9
121,013 - BACOVA_04766 0.22 -0.3
121,081 + BACOVA_04766 0.33 +0.3
121,081 + BACOVA_04766 0.33 -0.9
121,112 + BACOVA_04766 0.37 -0.2
121,114 + BACOVA_04766 0.38 -0.9
121,114 + BACOVA_04766 0.38 +0.3
121,186 + BACOVA_04766 0.49 +0.5
121,378 + BACOVA_04766 0.78 -0.3
121,378 + BACOVA_04766 0.78 -0.3
121,388 - BACOVA_04766 0.79 -0.2
121,418 + BACOVA_04766 0.84 -0.6
121,418 + BACOVA_04766 0.84 +0.8
121,419 - BACOVA_04766 0.84 +0.7
121,419 - BACOVA_04766 0.84 -0.1
121,446 + BACOVA_04766 0.88 +0.4
121,518 + +0.1
121,518 + -0.9
121,519 - -1.0
121,610 + BACOVA_04767 0.11 +0.0
121,610 + BACOVA_04767 0.11 +1.3
121,782 + BACOVA_04767 0.44 -0.1
121,837 + BACOVA_04767 0.55 +2.3

Or see this region's nucleotide sequence