Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03753

Experiment: Columbia 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03752 and BACOVA_03753 are separated by 2 nucleotidesBACOVA_03753 and BACOVA_03754 are separated by 27 nucleotides BACOVA_03752: BACOVA_03752 - carbamoyl-phosphate synthase, large subunit, at 81,784 to 85,011 _03752 BACOVA_03753: BACOVA_03753 - carbamoyl-phosphate synthase, small subunit, at 85,014 to 86,159 _03753 BACOVA_03754: BACOVA_03754 - class II glutamine amidotransferase, at 86,187 to 88,070 _03754 Position (kb) 85 86 87Strain fitness (log2 ratio) -2 -1 0 1 2at 84.127 kb on + strand, within BACOVA_03752at 84.170 kb on + strand, within BACOVA_03752at 84.170 kb on + strand, within BACOVA_03752at 84.171 kb on + strand, within BACOVA_03752at 84.171 kb on - strand, within BACOVA_03752at 84.175 kb on + strand, within BACOVA_03752at 84.176 kb on - strand, within BACOVA_03752at 84.213 kb on + strand, within BACOVA_03752at 84.217 kb on + strand, within BACOVA_03752at 84.217 kb on + strand, within BACOVA_03752at 84.217 kb on + strand, within BACOVA_03752at 84.217 kb on + strand, within BACOVA_03752at 84.217 kb on + strand, within BACOVA_03752at 84.237 kb on + strand, within BACOVA_03752at 84.237 kb on + strand, within BACOVA_03752at 84.238 kb on - strand, within BACOVA_03752at 84.242 kb on + strand, within BACOVA_03752at 84.339 kb on + strand, within BACOVA_03752at 84.361 kb on + strand, within BACOVA_03752at 84.371 kb on + strand, within BACOVA_03752at 84.371 kb on + strand, within BACOVA_03752at 84.372 kb on - strand, within BACOVA_03752at 84.410 kb on - strand, within BACOVA_03752at 84.412 kb on + strand, within BACOVA_03752at 84.504 kb on - strand, within BACOVA_03752at 84.520 kb on + strand, within BACOVA_03752at 84.616 kb on - strand, within BACOVA_03752at 84.687 kb on - strand, within BACOVA_03752at 84.711 kb on - strandat 84.711 kb on - strandat 84.759 kb on + strandat 84.759 kb on + strandat 84.760 kb on - strandat 84.760 kb on - strandat 84.760 kb on - strandat 84.762 kb on + strandat 84.762 kb on + strandat 84.825 kb on - strandat 84.862 kb on - strandat 84.862 kb on - strandat 84.879 kb on + strandat 84.880 kb on - strandat 84.916 kb on - strandat 84.916 kb on - strandat 84.935 kb on + strandat 84.983 kb on - strandat 84.988 kb on + strandat 84.989 kb on - strandat 85.184 kb on + strand, within BACOVA_03753at 85.187 kb on + strand, within BACOVA_03753at 85.187 kb on + strand, within BACOVA_03753at 85.187 kb on + strand, within BACOVA_03753at 85.187 kb on + strand, within BACOVA_03753at 85.187 kb on + strand, within BACOVA_03753at 85.187 kb on + strand, within BACOVA_03753at 85.187 kb on + strand, within BACOVA_03753at 85.188 kb on - strand, within BACOVA_03753at 85.240 kb on - strand, within BACOVA_03753at 85.245 kb on - strand, within BACOVA_03753at 85.265 kb on + strand, within BACOVA_03753at 85.289 kb on - strand, within BACOVA_03753at 85.380 kb on - strand, within BACOVA_03753at 85.435 kb on - strand, within BACOVA_03753at 85.465 kb on + strand, within BACOVA_03753at 85.491 kb on + strand, within BACOVA_03753at 85.492 kb on - strand, within BACOVA_03753at 85.496 kb on + strand, within BACOVA_03753at 85.497 kb on - strand, within BACOVA_03753at 85.497 kb on - strand, within BACOVA_03753at 85.520 kb on + strand, within BACOVA_03753at 85.520 kb on + strand, within BACOVA_03753at 85.521 kb on - strand, within BACOVA_03753at 85.559 kb on + strand, within BACOVA_03753at 85.648 kb on + strand, within BACOVA_03753at 85.656 kb on - strand, within BACOVA_03753at 85.671 kb on + strand, within BACOVA_03753at 85.680 kb on + strand, within BACOVA_03753at 85.681 kb on - strand, within BACOVA_03753at 85.684 kb on + strand, within BACOVA_03753at 85.684 kb on + strand, within BACOVA_03753at 85.685 kb on - strand, within BACOVA_03753at 85.685 kb on - strand, within BACOVA_03753at 85.699 kb on + strand, within BACOVA_03753at 85.778 kb on + strand, within BACOVA_03753at 85.870 kb on + strand, within BACOVA_03753at 85.870 kb on + strand, within BACOVA_03753at 85.870 kb on + strand, within BACOVA_03753at 85.877 kb on - strand, within BACOVA_03753at 85.882 kb on + strand, within BACOVA_03753at 85.959 kb on - strand, within BACOVA_03753at 85.959 kb on - strand, within BACOVA_03753at 85.980 kb on - strand, within BACOVA_03753at 85.998 kb on - strand, within BACOVA_03753at 86.020 kb on + strand, within BACOVA_03753at 86.063 kb on + strandat 86.064 kb on - strandat 86.074 kb on - strandat 86.142 kb on + strandat 86.163 kb on + strandat 86.163 kb on + strandat 86.163 kb on + strandat 86.179 kb on + strandat 86.180 kb on - strandat 86.208 kb on + strandat 86.209 kb on - strandat 86.211 kb on - strandat 86.211 kb on - strandat 86.211 kb on - strandat 86.212 kb on + strandat 86.212 kb on + strandat 86.255 kb on + strandat 86.261 kb on - strandat 86.261 kb on - strandat 86.261 kb on - strandat 86.416 kb on + strand, within BACOVA_03754at 86.416 kb on + strand, within BACOVA_03754at 86.417 kb on - strand, within BACOVA_03754at 86.417 kb on - strand, within BACOVA_03754at 86.417 kb on - strand, within BACOVA_03754at 86.417 kb on - strand, within BACOVA_03754at 86.417 kb on - strand, within BACOVA_03754at 86.431 kb on + strand, within BACOVA_03754at 86.436 kb on + strand, within BACOVA_03754at 86.436 kb on + strand, within BACOVA_03754at 86.581 kb on + strand, within BACOVA_03754at 86.585 kb on - strand, within BACOVA_03754at 86.616 kb on + strand, within BACOVA_03754at 86.617 kb on - strand, within BACOVA_03754at 86.619 kb on + strand, within BACOVA_03754at 86.620 kb on - strand, within BACOVA_03754at 86.663 kb on + strand, within BACOVA_03754at 86.743 kb on + strand, within BACOVA_03754at 86.748 kb on - strand, within BACOVA_03754at 86.748 kb on - strand, within BACOVA_03754at 86.755 kb on + strand, within BACOVA_03754at 86.805 kb on - strand, within BACOVA_03754at 86.847 kb on - strand, within BACOVA_03754at 86.960 kb on - strand, within BACOVA_03754at 86.960 kb on - strand, within BACOVA_03754at 87.003 kb on - strand, within BACOVA_03754at 87.018 kb on - strand, within BACOVA_03754at 87.074 kb on + strand, within BACOVA_03754at 87.106 kb on + strand, within BACOVA_03754at 87.110 kb on + strand, within BACOVA_03754

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Per-strain Table

Position Strand Gene LocusTag Fraction Columbia 1 x (C) complex media
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84,127 + BACOVA_03752 0.73 +0.1
84,170 + BACOVA_03752 0.74 -1.9
84,170 + BACOVA_03752 0.74 -0.6
84,171 + BACOVA_03752 0.74 +0.2
84,171 - BACOVA_03752 0.74 -0.3
84,175 + BACOVA_03752 0.74 -0.7
84,176 - BACOVA_03752 0.74 -0.1
84,213 + BACOVA_03752 0.75 +1.1
84,217 + BACOVA_03752 0.75 -1.5
84,217 + BACOVA_03752 0.75 -0.5
84,217 + BACOVA_03752 0.75 -0.3
84,217 + BACOVA_03752 0.75 +0.6
84,217 + BACOVA_03752 0.75 -1.4
84,237 + BACOVA_03752 0.76 -1.1
84,237 + BACOVA_03752 0.76 +1.3
84,238 - BACOVA_03752 0.76 -0.2
84,242 + BACOVA_03752 0.76 +1.8
84,339 + BACOVA_03752 0.79 +0.2
84,361 + BACOVA_03752 0.80 +0.7
84,371 + BACOVA_03752 0.80 -0.5
84,371 + BACOVA_03752 0.80 -0.5
84,372 - BACOVA_03752 0.80 +0.6
84,410 - BACOVA_03752 0.81 +0.2
84,412 + BACOVA_03752 0.81 +0.1
84,504 - BACOVA_03752 0.84 +1.0
84,520 + BACOVA_03752 0.85 -0.7
84,616 - BACOVA_03752 0.88 -0.3
84,687 - BACOVA_03752 0.90 +0.2
84,711 - -2.3
84,711 - +0.3
84,759 + +0.9
84,759 + -1.2
84,760 - +0.3
84,760 - +0.4
84,760 - +0.6
84,762 + +1.3
84,762 + +1.0
84,825 - +1.0
84,862 - +1.0
84,862 - +0.8
84,879 + -0.8
84,880 - -1.5
84,916 - -0.2
84,916 - -1.5
84,935 + +0.8
84,983 - -1.0
84,988 + +0.3
84,989 - -0.3
85,184 + BACOVA_03753 0.15 -0.4
85,187 + BACOVA_03753 0.15 -0.7
85,187 + BACOVA_03753 0.15 +0.8
85,187 + BACOVA_03753 0.15 -0.1
85,187 + BACOVA_03753 0.15 +0.5
85,187 + BACOVA_03753 0.15 -0.1
85,187 + BACOVA_03753 0.15 -0.4
85,187 + BACOVA_03753 0.15 -0.2
85,188 - BACOVA_03753 0.15 -0.5
85,240 - BACOVA_03753 0.20 +0.1
85,245 - BACOVA_03753 0.20 -0.7
85,265 + BACOVA_03753 0.22 +0.1
85,289 - BACOVA_03753 0.24 -1.0
85,380 - BACOVA_03753 0.32 -0.3
85,435 - BACOVA_03753 0.37 -1.1
85,465 + BACOVA_03753 0.39 +0.6
85,491 + BACOVA_03753 0.42 +0.4
85,492 - BACOVA_03753 0.42 -0.1
85,496 + BACOVA_03753 0.42 -0.4
85,497 - BACOVA_03753 0.42 -1.1
85,497 - BACOVA_03753 0.42 +0.3
85,520 + BACOVA_03753 0.44 -0.0
85,520 + BACOVA_03753 0.44 +0.1
85,521 - BACOVA_03753 0.44 +1.2
85,559 + BACOVA_03753 0.48 +0.6
85,648 + BACOVA_03753 0.55 -0.2
85,656 - BACOVA_03753 0.56 +0.4
85,671 + BACOVA_03753 0.57 +0.2
85,680 + BACOVA_03753 0.58 -0.7
85,681 - BACOVA_03753 0.58 +1.2
85,684 + BACOVA_03753 0.58 -0.0
85,684 + BACOVA_03753 0.58 +0.3
85,685 - BACOVA_03753 0.59 -0.9
85,685 - BACOVA_03753 0.59 -0.1
85,699 + BACOVA_03753 0.60 -0.0
85,778 + BACOVA_03753 0.67 +0.3
85,870 + BACOVA_03753 0.75 +0.4
85,870 + BACOVA_03753 0.75 +0.5
85,870 + BACOVA_03753 0.75 +0.8
85,877 - BACOVA_03753 0.75 +2.1
85,882 + BACOVA_03753 0.76 +0.3
85,959 - BACOVA_03753 0.82 +1.3
85,959 - BACOVA_03753 0.82 +0.2
85,980 - BACOVA_03753 0.84 +0.0
85,998 - BACOVA_03753 0.86 -0.2
86,020 + BACOVA_03753 0.88 +1.0
86,063 + -2.7
86,064 - -0.7
86,074 - +0.3
86,142 + -0.4
86,163 + -0.4
86,163 + -1.0
86,163 + +1.0
86,179 + -2.6
86,180 - -2.4
86,208 + +0.2
86,209 - +0.3
86,211 - +1.2
86,211 - +1.1
86,211 - -0.1
86,212 + +0.9
86,212 + +0.0
86,255 + +0.1
86,261 - +0.4
86,261 - -1.3
86,261 - +0.8
86,416 + BACOVA_03754 0.12 +0.7
86,416 + BACOVA_03754 0.12 +0.7
86,417 - BACOVA_03754 0.12 -1.1
86,417 - BACOVA_03754 0.12 +0.9
86,417 - BACOVA_03754 0.12 +1.0
86,417 - BACOVA_03754 0.12 -0.5
86,417 - BACOVA_03754 0.12 -0.1
86,431 + BACOVA_03754 0.13 -0.3
86,436 + BACOVA_03754 0.13 +0.2
86,436 + BACOVA_03754 0.13 -1.2
86,581 + BACOVA_03754 0.21 -0.2
86,585 - BACOVA_03754 0.21 +0.5
86,616 + BACOVA_03754 0.23 -0.8
86,617 - BACOVA_03754 0.23 -1.3
86,619 + BACOVA_03754 0.23 -1.0
86,620 - BACOVA_03754 0.23 -0.6
86,663 + BACOVA_03754 0.25 +0.2
86,743 + BACOVA_03754 0.30 +1.1
86,748 - BACOVA_03754 0.30 +1.0
86,748 - BACOVA_03754 0.30 +0.3
86,755 + BACOVA_03754 0.30 -0.3
86,805 - BACOVA_03754 0.33 -0.4
86,847 - BACOVA_03754 0.35 +0.7
86,960 - BACOVA_03754 0.41 -0.8
86,960 - BACOVA_03754 0.41 -0.0
87,003 - BACOVA_03754 0.43 +0.7
87,018 - BACOVA_03754 0.44 -0.1
87,074 + BACOVA_03754 0.47 -1.0
87,106 + BACOVA_03754 0.49 -2.7
87,110 + BACOVA_03754 0.49 +0.8

Or see this region's nucleotide sequence