Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03749

Experiment: Columbia 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03748 and BACOVA_03749 are separated by 17 nucleotidesBACOVA_03749 and BACOVA_03750 are separated by 29 nucleotides BACOVA_03748: BACOVA_03748 - Ser/Thr phosphatase family protein, at 78,084 to 79,181 _03748 BACOVA_03749: BACOVA_03749 - hypothetical protein, at 79,199 to 80,212 _03749 BACOVA_03750: BACOVA_03750 - phosphate-selective porin O and P, at 80,242 to 81,612 _03750 Position (kb) 79 80 81Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 78.229 kb on + strand, within BACOVA_03748at 78.229 kb on + strand, within BACOVA_03748at 78.301 kb on + strand, within BACOVA_03748at 78.342 kb on - strand, within BACOVA_03748at 78.342 kb on - strand, within BACOVA_03748at 78.347 kb on + strand, within BACOVA_03748at 78.348 kb on - strand, within BACOVA_03748at 78.348 kb on - strand, within BACOVA_03748at 78.449 kb on + strand, within BACOVA_03748at 78.450 kb on - strand, within BACOVA_03748at 78.450 kb on - strand, within BACOVA_03748at 78.467 kb on + strand, within BACOVA_03748at 78.488 kb on + strand, within BACOVA_03748at 78.528 kb on + strand, within BACOVA_03748at 78.542 kb on + strand, within BACOVA_03748at 78.542 kb on + strand, within BACOVA_03748at 78.585 kb on - strand, within BACOVA_03748at 78.586 kb on + strand, within BACOVA_03748at 78.586 kb on + strand, within BACOVA_03748at 78.587 kb on - strand, within BACOVA_03748at 78.644 kb on - strand, within BACOVA_03748at 78.665 kb on - strand, within BACOVA_03748at 78.753 kb on + strand, within BACOVA_03748at 78.767 kb on - strand, within BACOVA_03748at 78.785 kb on + strand, within BACOVA_03748at 78.809 kb on - strand, within BACOVA_03748at 78.863 kb on + strand, within BACOVA_03748at 79.011 kb on - strand, within BACOVA_03748at 79.021 kb on - strand, within BACOVA_03748at 79.021 kb on - strand, within BACOVA_03748at 79.021 kb on - strand, within BACOVA_03748at 79.021 kb on - strand, within BACOVA_03748at 79.074 kb on + strandat 79.075 kb on - strandat 79.075 kb on - strandat 79.088 kb on - strandat 79.089 kb on + strandat 79.090 kb on - strandat 79.091 kb on + strandat 79.091 kb on + strandat 79.171 kb on - strandat 79.193 kb on - strandat 79.216 kb on + strandat 79.220 kb on + strandat 79.241 kb on - strandat 79.268 kb on - strandat 79.269 kb on + strandat 79.270 kb on - strandat 79.326 kb on + strand, within BACOVA_03749at 79.331 kb on - strand, within BACOVA_03749at 79.375 kb on + strand, within BACOVA_03749at 79.375 kb on + strand, within BACOVA_03749at 79.376 kb on - strand, within BACOVA_03749at 79.379 kb on + strand, within BACOVA_03749at 79.451 kb on - strand, within BACOVA_03749at 79.459 kb on + strand, within BACOVA_03749at 79.508 kb on + strand, within BACOVA_03749at 79.513 kb on + strand, within BACOVA_03749at 79.529 kb on + strand, within BACOVA_03749at 79.530 kb on - strand, within BACOVA_03749at 79.530 kb on - strand, within BACOVA_03749at 79.531 kb on + strand, within BACOVA_03749at 79.531 kb on + strand, within BACOVA_03749at 79.533 kb on + strand, within BACOVA_03749at 79.533 kb on + strand, within BACOVA_03749at 79.577 kb on - strand, within BACOVA_03749at 79.598 kb on - strand, within BACOVA_03749at 79.601 kb on - strand, within BACOVA_03749at 79.602 kb on + strand, within BACOVA_03749at 79.602 kb on + strand, within BACOVA_03749at 79.603 kb on - strand, within BACOVA_03749at 79.659 kb on + strand, within BACOVA_03749at 79.660 kb on - strand, within BACOVA_03749at 79.660 kb on - strand, within BACOVA_03749at 79.667 kb on - strand, within BACOVA_03749at 79.697 kb on - strand, within BACOVA_03749at 79.711 kb on + strand, within BACOVA_03749at 79.711 kb on + strand, within BACOVA_03749at 79.714 kb on + strand, within BACOVA_03749at 79.786 kb on + strand, within BACOVA_03749at 79.892 kb on - strand, within BACOVA_03749at 79.959 kb on + strand, within BACOVA_03749at 79.963 kb on + strand, within BACOVA_03749at 80.003 kb on - strand, within BACOVA_03749at 80.017 kb on + strand, within BACOVA_03749at 80.018 kb on - strand, within BACOVA_03749at 80.026 kb on + strand, within BACOVA_03749at 80.027 kb on - strand, within BACOVA_03749at 80.035 kb on + strand, within BACOVA_03749at 80.068 kb on + strand, within BACOVA_03749at 80.119 kb on + strandat 80.120 kb on - strandat 80.120 kb on - strandat 80.153 kb on - strandat 80.153 kb on - strandat 80.207 kb on - strandat 80.227 kb on + strandat 80.259 kb on + strandat 80.260 kb on - strandat 80.273 kb on - strandat 80.299 kb on + strandat 80.308 kb on + strandat 80.316 kb on + strandat 80.317 kb on - strandat 80.355 kb on + strandat 80.361 kb on + strandat 80.369 kb on + strandat 80.370 kb on - strandat 80.376 kb on - strandat 80.376 kb on - strandat 80.409 kb on - strand, within BACOVA_03750at 80.453 kb on - strand, within BACOVA_03750at 80.454 kb on + strand, within BACOVA_03750at 80.455 kb on - strand, within BACOVA_03750at 80.456 kb on + strand, within BACOVA_03750at 80.457 kb on - strand, within BACOVA_03750at 80.457 kb on - strand, within BACOVA_03750at 80.485 kb on - strand, within BACOVA_03750at 80.488 kb on + strand, within BACOVA_03750at 80.489 kb on - strand, within BACOVA_03750at 80.489 kb on - strand, within BACOVA_03750at 80.493 kb on + strand, within BACOVA_03750at 80.529 kb on + strand, within BACOVA_03750at 80.573 kb on + strand, within BACOVA_03750at 80.573 kb on + strand, within BACOVA_03750at 80.611 kb on - strand, within BACOVA_03750at 80.615 kb on + strand, within BACOVA_03750at 80.626 kb on - strand, within BACOVA_03750at 80.629 kb on + strand, within BACOVA_03750at 80.661 kb on + strand, within BACOVA_03750at 80.662 kb on - strand, within BACOVA_03750at 80.669 kb on + strand, within BACOVA_03750at 80.670 kb on - strand, within BACOVA_03750at 80.670 kb on - strand, within BACOVA_03750at 80.674 kb on - strand, within BACOVA_03750at 80.691 kb on + strand, within BACOVA_03750at 80.691 kb on + strand, within BACOVA_03750at 80.698 kb on - strand, within BACOVA_03750at 80.699 kb on + strand, within BACOVA_03750at 80.709 kb on - strand, within BACOVA_03750at 80.751 kb on + strand, within BACOVA_03750at 80.751 kb on + strand, within BACOVA_03750at 80.754 kb on + strand, within BACOVA_03750at 80.756 kb on + strand, within BACOVA_03750at 80.880 kb on + strand, within BACOVA_03750at 80.881 kb on - strand, within BACOVA_03750at 80.885 kb on + strand, within BACOVA_03750at 80.918 kb on + strand, within BACOVA_03750at 80.923 kb on - strand, within BACOVA_03750at 80.935 kb on + strand, within BACOVA_03750at 80.989 kb on - strand, within BACOVA_03750at 81.200 kb on + strand, within BACOVA_03750at 81.209 kb on + strand, within BACOVA_03750at 81.209 kb on + strand, within BACOVA_03750

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Per-strain Table

Position Strand Gene LocusTag Fraction Columbia 1 x (C) complex media
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78,229 + BACOVA_03748 0.13 +1.0
78,229 + BACOVA_03748 0.13 +0.8
78,301 + BACOVA_03748 0.20 +0.2
78,342 - BACOVA_03748 0.23 +0.6
78,342 - BACOVA_03748 0.23 +0.6
78,347 + BACOVA_03748 0.24 -1.2
78,348 - BACOVA_03748 0.24 -0.4
78,348 - BACOVA_03748 0.24 -0.0
78,449 + BACOVA_03748 0.33 -0.0
78,450 - BACOVA_03748 0.33 +0.0
78,450 - BACOVA_03748 0.33 -0.4
78,467 + BACOVA_03748 0.35 -0.4
78,488 + BACOVA_03748 0.37 -1.4
78,528 + BACOVA_03748 0.40 -0.3
78,542 + BACOVA_03748 0.42 +0.1
78,542 + BACOVA_03748 0.42 -0.5
78,585 - BACOVA_03748 0.46 -0.1
78,586 + BACOVA_03748 0.46 +0.8
78,586 + BACOVA_03748 0.46 -0.1
78,587 - BACOVA_03748 0.46 -0.9
78,644 - BACOVA_03748 0.51 -0.6
78,665 - BACOVA_03748 0.53 -1.5
78,753 + BACOVA_03748 0.61 -0.3
78,767 - BACOVA_03748 0.62 +0.2
78,785 + BACOVA_03748 0.64 -1.5
78,809 - BACOVA_03748 0.66 +0.1
78,863 + BACOVA_03748 0.71 -0.8
79,011 - BACOVA_03748 0.84 +0.6
79,021 - BACOVA_03748 0.85 -0.1
79,021 - BACOVA_03748 0.85 +0.3
79,021 - BACOVA_03748 0.85 -0.6
79,021 - BACOVA_03748 0.85 +0.3
79,074 + +0.0
79,075 - +0.1
79,075 - -0.8
79,088 - +0.8
79,089 + +0.4
79,090 - -1.0
79,091 + +0.6
79,091 + -0.0
79,171 - +0.6
79,193 - -0.7
79,216 + +1.9
79,220 + -0.0
79,241 - +0.0
79,268 - +1.4
79,269 + -0.7
79,270 - +0.8
79,326 + BACOVA_03749 0.13 -0.5
79,331 - BACOVA_03749 0.13 +0.8
79,375 + BACOVA_03749 0.17 +0.9
79,375 + BACOVA_03749 0.17 +0.5
79,376 - BACOVA_03749 0.17 -0.1
79,379 + BACOVA_03749 0.18 +1.8
79,451 - BACOVA_03749 0.25 -0.1
79,459 + BACOVA_03749 0.26 -0.9
79,508 + BACOVA_03749 0.30 +0.3
79,513 + BACOVA_03749 0.31 +0.3
79,529 + BACOVA_03749 0.33 +0.5
79,530 - BACOVA_03749 0.33 +1.4
79,530 - BACOVA_03749 0.33 +0.6
79,531 + BACOVA_03749 0.33 -0.1
79,531 + BACOVA_03749 0.33 -1.4
79,533 + BACOVA_03749 0.33 +0.7
79,533 + BACOVA_03749 0.33 +0.5
79,577 - BACOVA_03749 0.37 +0.5
79,598 - BACOVA_03749 0.39 +0.2
79,601 - BACOVA_03749 0.40 -1.4
79,602 + BACOVA_03749 0.40 -0.1
79,602 + BACOVA_03749 0.40 +0.3
79,603 - BACOVA_03749 0.40 +0.2
79,659 + BACOVA_03749 0.45 -1.5
79,660 - BACOVA_03749 0.45 -0.4
79,660 - BACOVA_03749 0.45 -0.6
79,667 - BACOVA_03749 0.46 -0.2
79,697 - BACOVA_03749 0.49 -0.8
79,711 + BACOVA_03749 0.50 +0.0
79,711 + BACOVA_03749 0.50 +1.5
79,714 + BACOVA_03749 0.51 +0.5
79,786 + BACOVA_03749 0.58 -0.0
79,892 - BACOVA_03749 0.68 -0.1
79,959 + BACOVA_03749 0.75 -2.7
79,963 + BACOVA_03749 0.75 +1.8
80,003 - BACOVA_03749 0.79 +0.2
80,017 + BACOVA_03749 0.81 -0.8
80,018 - BACOVA_03749 0.81 -0.2
80,026 + BACOVA_03749 0.82 +0.6
80,027 - BACOVA_03749 0.82 -0.2
80,035 + BACOVA_03749 0.82 -1.3
80,068 + BACOVA_03749 0.86 +0.9
80,119 + -0.6
80,120 - +1.0
80,120 - +0.4
80,153 - -0.3
80,153 - -0.3
80,207 - -1.0
80,227 + +0.1
80,259 + -1.0
80,260 - -0.7
80,273 - -1.4
80,299 + +0.1
80,308 + +1.0
80,316 + -0.2
80,317 - -0.0
80,355 + +1.3
80,361 + -0.7
80,369 + +0.1
80,370 - -0.9
80,376 - +1.0
80,376 - -0.0
80,409 - BACOVA_03750 0.12 -0.4
80,453 - BACOVA_03750 0.15 -0.4
80,454 + BACOVA_03750 0.15 +0.3
80,455 - BACOVA_03750 0.16 -1.8
80,456 + BACOVA_03750 0.16 -0.6
80,457 - BACOVA_03750 0.16 +0.9
80,457 - BACOVA_03750 0.16 +0.2
80,485 - BACOVA_03750 0.18 +0.8
80,488 + BACOVA_03750 0.18 -0.4
80,489 - BACOVA_03750 0.18 -0.6
80,489 - BACOVA_03750 0.18 -0.1
80,493 + BACOVA_03750 0.18 -0.3
80,529 + BACOVA_03750 0.21 +0.7
80,573 + BACOVA_03750 0.24 -0.6
80,573 + BACOVA_03750 0.24 -2.8
80,611 - BACOVA_03750 0.27 +1.5
80,615 + BACOVA_03750 0.27 -1.0
80,626 - BACOVA_03750 0.28 -0.9
80,629 + BACOVA_03750 0.28 -0.4
80,661 + BACOVA_03750 0.31 +0.1
80,662 - BACOVA_03750 0.31 +0.5
80,669 + BACOVA_03750 0.31 +0.0
80,670 - BACOVA_03750 0.31 -1.2
80,670 - BACOVA_03750 0.31 -1.1
80,674 - BACOVA_03750 0.32 +0.6
80,691 + BACOVA_03750 0.33 -1.0
80,691 + BACOVA_03750 0.33 +0.1
80,698 - BACOVA_03750 0.33 +0.6
80,699 + BACOVA_03750 0.33 -1.4
80,709 - BACOVA_03750 0.34 -0.2
80,751 + BACOVA_03750 0.37 +0.3
80,751 + BACOVA_03750 0.37 +0.2
80,754 + BACOVA_03750 0.37 -0.5
80,756 + BACOVA_03750 0.37 -1.4
80,880 + BACOVA_03750 0.47 -0.5
80,881 - BACOVA_03750 0.47 -0.1
80,885 + BACOVA_03750 0.47 +0.5
80,918 + BACOVA_03750 0.49 +0.2
80,923 - BACOVA_03750 0.50 +0.3
80,935 + BACOVA_03750 0.51 -0.6
80,989 - BACOVA_03750 0.54 +0.7
81,200 + BACOVA_03750 0.70 -1.8
81,209 + BACOVA_03750 0.71 -0.4
81,209 + BACOVA_03750 0.71 -0.1

Or see this region's nucleotide sequence