Experiment: Columbia 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03652 and BACOVA_03653 are separated by 2 nucleotides BACOVA_03653 and BACOVA_03654 are separated by 128 nucleotides
BACOVA_03652: BACOVA_03652 - hypothetical protein, at 481,195 to 485,706
_03652
BACOVA_03653: BACOVA_03653 - outer membrane protein, OMP85 family, at 485,709 to 488,051
_03653
BACOVA_03654: BACOVA_03654 - hypothetical protein, at 488,180 to 489,091
_03654
Position (kb) 485
486
487
488
489 Strain fitness (log2 ratio) -2
-1
0
1 at 484.761 kb on - strand, within BACOVA_03652 at 484.765 kb on - strand, within BACOVA_03652 at 484.855 kb on + strand, within BACOVA_03652 at 484.970 kb on - strand, within BACOVA_03652 at 484.970 kb on - strand, within BACOVA_03652 at 485.138 kb on + strand, within BACOVA_03652 at 485.488 kb on - strand at 485.667 kb on + strand at 485.704 kb on + strand at 485.719 kb on + strand at 485.719 kb on + strand at 485.719 kb on + strand at 485.719 kb on + strand at 485.721 kb on + strand at 485.722 kb on - strand at 485.841 kb on - strand at 485.937 kb on - strand at 485.959 kb on - strand, within BACOVA_03653 at 485.961 kb on - strand, within BACOVA_03653 at 486.065 kb on + strand, within BACOVA_03653 at 486.066 kb on - strand, within BACOVA_03653 at 486.083 kb on - strand, within BACOVA_03653 at 486.120 kb on + strand, within BACOVA_03653 at 486.121 kb on - strand, within BACOVA_03653 at 486.175 kb on + strand, within BACOVA_03653 at 486.176 kb on - strand, within BACOVA_03653 at 486.270 kb on + strand, within BACOVA_03653 at 486.273 kb on - strand, within BACOVA_03653 at 486.420 kb on - strand, within BACOVA_03653 at 486.478 kb on - strand, within BACOVA_03653 at 486.560 kb on - strand, within BACOVA_03653 at 487.130 kb on + strand, within BACOVA_03653 at 487.279 kb on + strand, within BACOVA_03653 at 487.279 kb on + strand, within BACOVA_03653 at 487.282 kb on - strand, within BACOVA_03653 at 487.282 kb on - strand, within BACOVA_03653 at 487.283 kb on + strand, within BACOVA_03653 at 487.284 kb on - strand, within BACOVA_03653 at 487.322 kb on + strand, within BACOVA_03653 at 487.326 kb on + strand, within BACOVA_03653 at 487.327 kb on - strand, within BACOVA_03653 at 487.467 kb on - strand, within BACOVA_03653 at 487.487 kb on + strand, within BACOVA_03653 at 487.538 kb on + strand, within BACOVA_03653 at 487.659 kb on - strand, within BACOVA_03653 at 487.677 kb on + strand, within BACOVA_03653 at 487.704 kb on + strand, within BACOVA_03653 at 487.744 kb on + strand, within BACOVA_03653 at 487.744 kb on + strand, within BACOVA_03653 at 487.745 kb on - strand, within BACOVA_03653 at 487.911 kb on - strand at 487.911 kb on - strand at 487.986 kb on + strand at 488.049 kb on + strand at 488.049 kb on + strand at 488.049 kb on + strand at 488.049 kb on + strand at 488.080 kb on + strand at 488.090 kb on + strand at 488.090 kb on + strand at 488.091 kb on - strand at 488.112 kb on + strand at 488.113 kb on - strand at 488.113 kb on - strand at 488.156 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Columbia 1 x (C) complex media remove 484,761 - BACOVA_03652 0.79 -1.3 484,765 - BACOVA_03652 0.79 -2.1 484,855 + BACOVA_03652 0.81 -2.6 484,970 - BACOVA_03652 0.84 -1.7 484,970 - BACOVA_03652 0.84 -1.1 485,138 + BACOVA_03652 0.87 -0.9 485,488 - -1.3 485,667 + +0.6 485,704 + -0.1 485,719 + -0.3 485,719 + -0.7 485,719 + -0.9 485,719 + -0.4 485,721 + -0.9 485,722 - -1.5 485,841 - -1.1 485,937 - -1.1 485,959 - BACOVA_03653 0.11 -0.7 485,961 - BACOVA_03653 0.11 -1.3 486,065 + BACOVA_03653 0.15 +0.1 486,066 - BACOVA_03653 0.15 -2.4 486,083 - BACOVA_03653 0.16 -1.7 486,120 + BACOVA_03653 0.18 -0.3 486,121 - BACOVA_03653 0.18 -1.1 486,175 + BACOVA_03653 0.20 +0.1 486,176 - BACOVA_03653 0.20 -1.5 486,270 + BACOVA_03653 0.24 -0.7 486,273 - BACOVA_03653 0.24 -1.1 486,420 - BACOVA_03653 0.30 -2.3 486,478 - BACOVA_03653 0.33 -0.1 486,560 - BACOVA_03653 0.36 -1.5 487,130 + BACOVA_03653 0.61 -2.1 487,279 + BACOVA_03653 0.67 -1.3 487,279 + BACOVA_03653 0.67 -0.9 487,282 - BACOVA_03653 0.67 -1.1 487,282 - BACOVA_03653 0.67 -0.7 487,283 + BACOVA_03653 0.67 -0.8 487,284 - BACOVA_03653 0.67 -0.5 487,322 + BACOVA_03653 0.69 -2.1 487,326 + BACOVA_03653 0.69 -0.7 487,327 - BACOVA_03653 0.69 -1.5 487,467 - BACOVA_03653 0.75 -1.1 487,487 + BACOVA_03653 0.76 -1.3 487,538 + BACOVA_03653 0.78 -1.3 487,659 - BACOVA_03653 0.83 +0.1 487,677 + BACOVA_03653 0.84 -0.7 487,704 + BACOVA_03653 0.85 -1.5 487,744 + BACOVA_03653 0.87 -2.3 487,744 + BACOVA_03653 0.87 -1.5 487,745 - BACOVA_03653 0.87 -1.8 487,911 - -1.5 487,911 - -0.9 487,986 + +0.3 488,049 + -0.9 488,049 + +0.2 488,049 + -1.1 488,049 + +0.2 488,080 + +0.4 488,090 + -1.3 488,090 + -0.8 488,091 - +0.2 488,112 + -0.4 488,113 - +0.5 488,113 - -0.7 488,156 + +0.5
Or see this region's nucleotide sequence