Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_02595

Experiment: Columbia 1 x (C) complex media

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBACOVA_02593 and BACOVA_02594 are separated by 83 nucleotidesBACOVA_02594 and BACOVA_02595 are separated by 180 nucleotidesBACOVA_02595 and BACOVA_02596 are separated by 36 nucleotidesBACOVA_02596 and BACOVA_02597 overlap by 23 nucleotidesBACOVA_02597 and BACOVA_02598 are separated by 47 nucleotides BACOVA_02593: BACOVA_02593 - hypothetical protein, at 363,548 to 364,669 _02593 BACOVA_02594: BACOVA_02594 - hypothetical protein, at 364,753 to 365,295 _02594 BACOVA_02595: BACOVA_02595 - hypothetical protein, at 365,476 to 367,032 _02595 BACOVA_02596: BACOVA_02596 - ABC transporter, ATP-binding protein, at 367,069 to 367,584 _02596 BACOVA_02597: BACOVA_02597 - hypothetical protein, at 367,562 to 367,690 _02597 BACOVA_02598: BACOVA_02598 - conserved hypothetical protein TIGR00245, at 367,738 to 368,532 _02598 Position (kb) 365 366 367 368Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 364.532 kb on + strand, within BACOVA_02593at 364.533 kb on - strand, within BACOVA_02593at 364.534 kb on + strand, within BACOVA_02593at 364.535 kb on - strand, within BACOVA_02593at 364.583 kb on + strandat 364.675 kb on + strandat 364.678 kb on - strandat 364.679 kb on + strandat 364.682 kb on - strandat 364.682 kb on - strandat 364.686 kb on - strandat 364.694 kb on - strandat 364.948 kb on + strand, within BACOVA_02594at 364.948 kb on + strand, within BACOVA_02594at 365.077 kb on + strand, within BACOVA_02594at 365.125 kb on + strand, within BACOVA_02594at 365.130 kb on + strand, within BACOVA_02594at 365.131 kb on - strand, within BACOVA_02594at 365.134 kb on + strand, within BACOVA_02594at 365.134 kb on + strand, within BACOVA_02594at 365.134 kb on + strand, within BACOVA_02594at 365.135 kb on - strand, within BACOVA_02594at 365.140 kb on - strand, within BACOVA_02594at 365.154 kb on - strand, within BACOVA_02594at 365.157 kb on + strand, within BACOVA_02594at 365.190 kb on + strand, within BACOVA_02594at 365.257 kb on + strandat 365.258 kb on - strandat 365.309 kb on + strandat 365.317 kb on - strandat 365.364 kb on + strandat 365.364 kb on + strandat 365.368 kb on + strandat 365.369 kb on - strandat 365.473 kb on + strandat 365.475 kb on + strandat 365.475 kb on + strandat 365.566 kb on + strandat 365.868 kb on + strand, within BACOVA_02595at 366.280 kb on - strand, within BACOVA_02595at 366.499 kb on + strand, within BACOVA_02595at 366.505 kb on - strand, within BACOVA_02595at 366.586 kb on + strand, within BACOVA_02595at 366.586 kb on + strand, within BACOVA_02595at 366.609 kb on + strand, within BACOVA_02595at 366.611 kb on + strand, within BACOVA_02595at 366.673 kb on + strand, within BACOVA_02595at 366.674 kb on - strand, within BACOVA_02595at 367.031 kb on - strandat 367.031 kb on - strandat 367.031 kb on - strandat 367.066 kb on + strandat 367.073 kb on + strandat 367.073 kb on + strandat 367.073 kb on + strandat 367.074 kb on - strandat 367.074 kb on - strandat 367.077 kb on + strandat 367.080 kb on + strandat 367.092 kb on + strandat 367.131 kb on + strand, within BACOVA_02596at 367.208 kb on + strand, within BACOVA_02596at 367.239 kb on + strand, within BACOVA_02596at 367.239 kb on + strand, within BACOVA_02596at 367.240 kb on - strand, within BACOVA_02596at 367.266 kb on + strand, within BACOVA_02596at 367.266 kb on + strand, within BACOVA_02596at 367.282 kb on - strand, within BACOVA_02596at 367.326 kb on + strand, within BACOVA_02596at 367.494 kb on + strand, within BACOVA_02596at 367.495 kb on - strand, within BACOVA_02596at 367.495 kb on - strand, within BACOVA_02596at 367.497 kb on + strand, within BACOVA_02596at 367.537 kb on - strandat 367.633 kb on - strand, within BACOVA_02597at 367.639 kb on - strand, within BACOVA_02597at 367.680 kb on + strandat 367.692 kb on + strandat 367.718 kb on - strandat 367.733 kb on - strandat 367.753 kb on - strandat 367.753 kb on - strandat 367.754 kb on + strandat 367.759 kb on + strandat 367.760 kb on - strandat 367.762 kb on + strandat 367.762 kb on + strandat 367.762 kb on + strandat 367.762 kb on + strandat 367.764 kb on + strandat 367.859 kb on + strand, within BACOVA_02598at 367.860 kb on - strand, within BACOVA_02598at 367.884 kb on + strand, within BACOVA_02598at 367.894 kb on + strand, within BACOVA_02598at 367.953 kb on + strand, within BACOVA_02598at 367.953 kb on + strand, within BACOVA_02598at 367.958 kb on + strand, within BACOVA_02598at 367.990 kb on - strand, within BACOVA_02598at 368.026 kb on - strand, within BACOVA_02598

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Columbia 1 x (C) complex media
remove
364,532 + BACOVA_02593 0.88 +1.1
364,533 - BACOVA_02593 0.88 -0.9
364,534 + BACOVA_02593 0.88 -1.1
364,535 - BACOVA_02593 0.88 -0.9
364,583 + -0.1
364,675 + -1.2
364,678 - -0.6
364,679 + -0.6
364,682 - -0.7
364,682 - -1.1
364,686 - +1.6
364,694 - -0.4
364,948 + BACOVA_02594 0.36 -0.1
364,948 + BACOVA_02594 0.36 +0.6
365,077 + BACOVA_02594 0.60 -0.6
365,125 + BACOVA_02594 0.69 -0.6
365,130 + BACOVA_02594 0.69 -1.3
365,131 - BACOVA_02594 0.70 +1.9
365,134 + BACOVA_02594 0.70 -1.1
365,134 + BACOVA_02594 0.70 -0.6
365,134 + BACOVA_02594 0.70 +0.1
365,135 - BACOVA_02594 0.70 -1.9
365,140 - BACOVA_02594 0.71 -0.4
365,154 - BACOVA_02594 0.74 -1.1
365,157 + BACOVA_02594 0.74 +1.9
365,190 + BACOVA_02594 0.80 -1.8
365,257 + -1.6
365,258 - -0.2
365,309 + +0.5
365,317 - -0.1
365,364 + +0.8
365,364 + +0.2
365,368 + +0.3
365,369 - -1.6
365,473 + -1.2
365,475 + -0.9
365,475 + -0.1
365,566 + -1.5
365,868 + BACOVA_02595 0.25 +1.1
366,280 - BACOVA_02595 0.52 +0.6
366,499 + BACOVA_02595 0.66 +0.9
366,505 - BACOVA_02595 0.66 -1.4
366,586 + BACOVA_02595 0.71 +0.6
366,586 + BACOVA_02595 0.71 +1.4
366,609 + BACOVA_02595 0.73 -0.6
366,611 + BACOVA_02595 0.73 -1.5
366,673 + BACOVA_02595 0.77 +0.4
366,674 - BACOVA_02595 0.77 -1.2
367,031 - +0.4
367,031 - +0.9
367,031 - -0.3
367,066 + +0.9
367,073 + -1.2
367,073 + -0.2
367,073 + +0.1
367,074 - +0.1
367,074 - +1.5
367,077 + +0.9
367,080 + -1.7
367,092 + +0.1
367,131 + BACOVA_02596 0.12 +1.0
367,208 + BACOVA_02596 0.27 +1.2
367,239 + BACOVA_02596 0.33 +0.5
367,239 + BACOVA_02596 0.33 +0.7
367,240 - BACOVA_02596 0.33 +0.9
367,266 + BACOVA_02596 0.38 -0.9
367,266 + BACOVA_02596 0.38 -0.3
367,282 - BACOVA_02596 0.41 +0.6
367,326 + BACOVA_02596 0.50 -3.6
367,494 + BACOVA_02596 0.82 +0.2
367,495 - BACOVA_02596 0.83 -1.5
367,495 - BACOVA_02596 0.83 +1.2
367,497 + BACOVA_02596 0.83 -1.1
367,537 - -1.1
367,633 - BACOVA_02597 0.55 -0.9
367,639 - BACOVA_02597 0.60 -1.1
367,680 + +0.5
367,692 + +0.9
367,718 - -1.1
367,733 - -0.4
367,753 - -0.4
367,753 - -0.1
367,754 + -0.1
367,759 + -1.2
367,760 - -1.2
367,762 + +0.5
367,762 + -2.9
367,762 + +0.8
367,762 + +1.4
367,764 + +0.8
367,859 + BACOVA_02598 0.15 -0.5
367,860 - BACOVA_02598 0.15 -0.6
367,884 + BACOVA_02598 0.18 +1.7
367,894 + BACOVA_02598 0.20 +1.1
367,953 + BACOVA_02598 0.27 -0.2
367,953 + BACOVA_02598 0.27 +0.8
367,958 + BACOVA_02598 0.28 -0.8
367,990 - BACOVA_02598 0.32 +0.4
368,026 - BACOVA_02598 0.36 -0.4

Or see this region's nucleotide sequence