Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01788

Experiment: Columbia 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01786 and BACOVA_01787 overlap by 4 nucleotidesBACOVA_01787 and BACOVA_01788 are separated by 27 nucleotidesBACOVA_01788 and BACOVA_01789 are separated by 212 nucleotides BACOVA_01786: BACOVA_01786 - hypothetical protein, at 207,937 to 208,047 _01786 BACOVA_01787: BACOVA_01787 - hypothetical protein, at 208,044 to 208,922 _01787 BACOVA_01788: BACOVA_01788 - hypothetical protein, at 208,950 to 209,531 _01788 BACOVA_01789: BACOVA_01789 - hypothetical protein, at 209,744 to 211,786 _01789 Position (kb) 208 209 210Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 207.950 kb on + strand, within BACOVA_01786at 208.007 kb on - strand, within BACOVA_01786at 208.010 kb on + strand, within BACOVA_01786at 208.010 kb on + strand, within BACOVA_01786at 208.015 kb on - strand, within BACOVA_01786at 208.019 kb on + strand, within BACOVA_01786at 208.025 kb on + strand, within BACOVA_01786at 208.025 kb on + strand, within BACOVA_01786at 208.026 kb on - strand, within BACOVA_01786at 208.039 kb on - strandat 208.064 kb on - strandat 208.080 kb on + strandat 208.158 kb on + strand, within BACOVA_01787at 208.158 kb on + strand, within BACOVA_01787at 208.162 kb on + strand, within BACOVA_01787at 208.163 kb on - strand, within BACOVA_01787at 208.170 kb on + strand, within BACOVA_01787at 208.179 kb on + strand, within BACOVA_01787at 208.196 kb on + strand, within BACOVA_01787at 208.201 kb on - strand, within BACOVA_01787at 208.240 kb on - strand, within BACOVA_01787at 208.240 kb on - strand, within BACOVA_01787at 208.245 kb on + strand, within BACOVA_01787at 208.324 kb on - strand, within BACOVA_01787at 208.324 kb on - strand, within BACOVA_01787at 208.332 kb on - strand, within BACOVA_01787at 208.340 kb on + strand, within BACOVA_01787at 208.347 kb on + strand, within BACOVA_01787at 208.421 kb on + strand, within BACOVA_01787at 208.433 kb on - strand, within BACOVA_01787at 208.469 kb on + strand, within BACOVA_01787at 208.497 kb on - strand, within BACOVA_01787at 208.517 kb on - strand, within BACOVA_01787at 208.615 kb on + strand, within BACOVA_01787at 208.649 kb on + strand, within BACOVA_01787at 208.649 kb on + strand, within BACOVA_01787at 208.650 kb on - strand, within BACOVA_01787at 208.652 kb on - strand, within BACOVA_01787at 208.656 kb on + strand, within BACOVA_01787at 208.656 kb on + strand, within BACOVA_01787at 208.701 kb on + strand, within BACOVA_01787at 208.701 kb on + strand, within BACOVA_01787at 208.702 kb on - strand, within BACOVA_01787at 208.702 kb on - strand, within BACOVA_01787at 208.702 kb on - strand, within BACOVA_01787at 208.751 kb on + strand, within BACOVA_01787at 208.784 kb on + strand, within BACOVA_01787at 208.800 kb on + strand, within BACOVA_01787at 208.804 kb on + strand, within BACOVA_01787at 208.824 kb on + strand, within BACOVA_01787at 208.824 kb on + strand, within BACOVA_01787at 208.825 kb on - strand, within BACOVA_01787at 208.825 kb on - strand, within BACOVA_01787at 208.836 kb on - strandat 208.848 kb on - strandat 208.854 kb on + strandat 208.855 kb on - strandat 208.855 kb on - strandat 208.862 kb on + strandat 209.007 kb on - strandat 209.071 kb on + strand, within BACOVA_01788at 209.072 kb on - strand, within BACOVA_01788at 209.072 kb on - strand, within BACOVA_01788at 209.102 kb on - strand, within BACOVA_01788at 209.209 kb on - strand, within BACOVA_01788at 209.230 kb on - strand, within BACOVA_01788at 209.272 kb on - strand, within BACOVA_01788at 209.273 kb on + strand, within BACOVA_01788at 209.274 kb on - strand, within BACOVA_01788at 209.310 kb on + strand, within BACOVA_01788at 209.311 kb on - strand, within BACOVA_01788at 209.311 kb on - strand, within BACOVA_01788at 209.311 kb on - strand, within BACOVA_01788at 209.311 kb on - strand, within BACOVA_01788at 209.311 kb on - strand, within BACOVA_01788at 209.313 kb on + strand, within BACOVA_01788at 209.346 kb on - strand, within BACOVA_01788at 209.366 kb on + strand, within BACOVA_01788at 209.367 kb on - strand, within BACOVA_01788at 209.368 kb on + strand, within BACOVA_01788at 209.368 kb on + strand, within BACOVA_01788at 209.369 kb on - strand, within BACOVA_01788at 209.384 kb on - strand, within BACOVA_01788at 209.391 kb on - strand, within BACOVA_01788at 209.404 kb on + strand, within BACOVA_01788at 209.482 kb on - strandat 209.549 kb on + strandat 209.550 kb on - strandat 209.554 kb on - strandat 209.558 kb on + strandat 209.606 kb on - strandat 209.618 kb on - strandat 209.626 kb on + strandat 209.679 kb on + strandat 209.815 kb on - strandat 209.830 kb on - strandat 209.830 kb on - strandat 209.830 kb on - strandat 209.858 kb on + strandat 209.866 kb on - strandat 209.866 kb on - strandat 209.906 kb on - strandat 209.947 kb on + strandat 210.087 kb on + strand, within BACOVA_01789at 210.088 kb on - strand, within BACOVA_01789at 210.088 kb on - strand, within BACOVA_01789at 210.090 kb on + strand, within BACOVA_01789at 210.133 kb on + strand, within BACOVA_01789at 210.202 kb on + strand, within BACOVA_01789at 210.245 kb on - strand, within BACOVA_01789at 210.254 kb on - strand, within BACOVA_01789at 210.268 kb on + strand, within BACOVA_01789at 210.275 kb on - strand, within BACOVA_01789at 210.275 kb on - strand, within BACOVA_01789at 210.317 kb on + strand, within BACOVA_01789at 210.479 kb on + strand, within BACOVA_01789at 210.480 kb on - strand, within BACOVA_01789at 210.500 kb on - strand, within BACOVA_01789at 210.500 kb on - strand, within BACOVA_01789at 210.505 kb on + strand, within BACOVA_01789at 210.505 kb on + strand, within BACOVA_01789at 210.505 kb on + strand, within BACOVA_01789at 210.506 kb on - strand, within BACOVA_01789at 210.509 kb on + strand, within BACOVA_01789at 210.510 kb on - strand, within BACOVA_01789at 210.530 kb on + strand, within BACOVA_01789

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Per-strain Table

Position Strand Gene LocusTag Fraction Columbia 1 x (C) complex media
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207,950 + BACOVA_01786 0.12 -1.3
208,007 - BACOVA_01786 0.63 -0.7
208,010 + BACOVA_01786 0.66 -0.8
208,010 + BACOVA_01786 0.66 -0.8
208,015 - BACOVA_01786 0.70 -0.1
208,019 + BACOVA_01786 0.74 +0.0
208,025 + BACOVA_01786 0.79 -0.2
208,025 + BACOVA_01786 0.79 +0.7
208,026 - BACOVA_01786 0.80 -0.1
208,039 - -0.5
208,064 - -1.2
208,080 + +0.1
208,158 + BACOVA_01787 0.13 +1.8
208,158 + BACOVA_01787 0.13 +0.0
208,162 + BACOVA_01787 0.13 +0.1
208,163 - BACOVA_01787 0.14 -0.1
208,170 + BACOVA_01787 0.14 -3.1
208,179 + BACOVA_01787 0.15 +0.3
208,196 + BACOVA_01787 0.17 -0.2
208,201 - BACOVA_01787 0.18 -0.2
208,240 - BACOVA_01787 0.22 +0.2
208,240 - BACOVA_01787 0.22 -0.8
208,245 + BACOVA_01787 0.23 +0.7
208,324 - BACOVA_01787 0.32 -1.3
208,324 - BACOVA_01787 0.32 +0.5
208,332 - BACOVA_01787 0.33 +0.3
208,340 + BACOVA_01787 0.34 -0.2
208,347 + BACOVA_01787 0.34 +0.3
208,421 + BACOVA_01787 0.43 -0.7
208,433 - BACOVA_01787 0.44 -1.4
208,469 + BACOVA_01787 0.48 -1.3
208,497 - BACOVA_01787 0.52 -0.8
208,517 - BACOVA_01787 0.54 -0.1
208,615 + BACOVA_01787 0.65 -0.9
208,649 + BACOVA_01787 0.69 -0.7
208,649 + BACOVA_01787 0.69 -0.4
208,650 - BACOVA_01787 0.69 -1.1
208,652 - BACOVA_01787 0.69 -0.6
208,656 + BACOVA_01787 0.70 +0.1
208,656 + BACOVA_01787 0.70 +0.6
208,701 + BACOVA_01787 0.75 -0.0
208,701 + BACOVA_01787 0.75 +0.2
208,702 - BACOVA_01787 0.75 -0.9
208,702 - BACOVA_01787 0.75 -0.4
208,702 - BACOVA_01787 0.75 +0.7
208,751 + BACOVA_01787 0.80 -1.6
208,784 + BACOVA_01787 0.84 +0.4
208,800 + BACOVA_01787 0.86 +0.3
208,804 + BACOVA_01787 0.86 -0.0
208,824 + BACOVA_01787 0.89 +0.3
208,824 + BACOVA_01787 0.89 -1.8
208,825 - BACOVA_01787 0.89 +0.9
208,825 - BACOVA_01787 0.89 -0.0
208,836 - +0.0
208,848 - +0.4
208,854 + +1.2
208,855 - -1.1
208,855 - -0.5
208,862 + -0.3
209,007 - +0.0
209,071 + BACOVA_01788 0.21 -2.4
209,072 - BACOVA_01788 0.21 -0.8
209,072 - BACOVA_01788 0.21 -2.3
209,102 - BACOVA_01788 0.26 -0.1
209,209 - BACOVA_01788 0.45 -0.3
209,230 - BACOVA_01788 0.48 -0.7
209,272 - BACOVA_01788 0.55 -0.0
209,273 + BACOVA_01788 0.55 -1.4
209,274 - BACOVA_01788 0.56 +0.1
209,310 + BACOVA_01788 0.62 -0.4
209,311 - BACOVA_01788 0.62 -1.7
209,311 - BACOVA_01788 0.62 -0.7
209,311 - BACOVA_01788 0.62 +1.8
209,311 - BACOVA_01788 0.62 +0.3
209,311 - BACOVA_01788 0.62 +0.8
209,313 + BACOVA_01788 0.62 -1.3
209,346 - BACOVA_01788 0.68 -1.3
209,366 + BACOVA_01788 0.71 +0.6
209,367 - BACOVA_01788 0.72 -1.5
209,368 + BACOVA_01788 0.72 -1.7
209,368 + BACOVA_01788 0.72 +0.8
209,369 - BACOVA_01788 0.72 -1.1
209,384 - BACOVA_01788 0.75 -0.0
209,391 - BACOVA_01788 0.76 +0.5
209,404 + BACOVA_01788 0.78 -0.4
209,482 - +0.4
209,549 + +0.8
209,550 - -1.6
209,554 - -1.1
209,558 + +0.0
209,606 - +0.4
209,618 - +0.0
209,626 + +1.6
209,679 + +0.7
209,815 - -2.0
209,830 - -1.1
209,830 - -0.4
209,830 - -0.3
209,858 + +0.3
209,866 - -0.4
209,866 - +0.4
209,906 - -4.1
209,947 + -0.4
210,087 + BACOVA_01789 0.17 -1.7
210,088 - BACOVA_01789 0.17 -0.9
210,088 - BACOVA_01789 0.17 +0.1
210,090 + BACOVA_01789 0.17 +1.0
210,133 + BACOVA_01789 0.19 +0.6
210,202 + BACOVA_01789 0.22 +0.0
210,245 - BACOVA_01789 0.25 +1.1
210,254 - BACOVA_01789 0.25 -0.4
210,268 + BACOVA_01789 0.26 -0.1
210,275 - BACOVA_01789 0.26 -0.5
210,275 - BACOVA_01789 0.26 -0.3
210,317 + BACOVA_01789 0.28 +0.5
210,479 + BACOVA_01789 0.36 +0.6
210,480 - BACOVA_01789 0.36 -0.3
210,500 - BACOVA_01789 0.37 +0.1
210,500 - BACOVA_01789 0.37 +0.2
210,505 + BACOVA_01789 0.37 -0.2
210,505 + BACOVA_01789 0.37 -0.4
210,505 + BACOVA_01789 0.37 -0.2
210,506 - BACOVA_01789 0.37 -0.5
210,509 + BACOVA_01789 0.37 +0.6
210,510 - BACOVA_01789 0.37 -0.2
210,530 + BACOVA_01789 0.38 -0.0

Or see this region's nucleotide sequence