Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01089

Experiment: Columbia 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01088 and BACOVA_01087 overlap by 2 nucleotidesBACOVA_01087 and BACOVA_01089 are separated by 582 nucleotidesBACOVA_01089 and BACOVA_01090 are separated by 111 nucleotides BACOVA_01088: BACOVA_01088 - hypothetical protein, at 297,835 to 299,943 _01088 BACOVA_01087: BACOVA_01087 - hypothetical protein, at 299,942 to 300,157 _01087 BACOVA_01089: BACOVA_01089 - hypothetical protein, at 300,740 to 300,859 _01089 BACOVA_01090: BACOVA_01090 - hypothetical protein, at 300,971 to 301,849 _01090 Position (kb) 300 301Strain fitness (log2 ratio) -2 -1 0 1 2at 299.828 kb on - strandat 299.946 kb on + strandat 299.956 kb on + strandat 299.957 kb on - strandat 299.963 kb on + strandat 299.963 kb on + strandat 299.963 kb on + strandat 299.994 kb on + strand, within BACOVA_01087at 299.994 kb on + strand, within BACOVA_01087at 299.994 kb on + strand, within BACOVA_01087at 300.001 kb on + strand, within BACOVA_01087at 300.002 kb on - strand, within BACOVA_01087at 300.020 kb on + strand, within BACOVA_01087at 300.050 kb on + strand, within BACOVA_01087at 300.050 kb on + strand, within BACOVA_01087at 300.054 kb on + strand, within BACOVA_01087at 300.054 kb on + strand, within BACOVA_01087at 300.055 kb on - strand, within BACOVA_01087at 300.055 kb on - strand, within BACOVA_01087at 300.055 kb on - strand, within BACOVA_01087at 300.055 kb on - strand, within BACOVA_01087at 300.057 kb on + strand, within BACOVA_01087at 300.058 kb on - strand, within BACOVA_01087at 300.077 kb on - strand, within BACOVA_01087at 300.080 kb on - strand, within BACOVA_01087at 300.100 kb on + strand, within BACOVA_01087at 300.121 kb on - strand, within BACOVA_01087at 300.123 kb on + strand, within BACOVA_01087at 300.124 kb on - strand, within BACOVA_01087at 300.172 kb on + strandat 300.175 kb on - strandat 300.176 kb on + strandat 300.176 kb on + strandat 300.177 kb on - strandat 300.236 kb on - strandat 300.267 kb on + strandat 300.288 kb on + strandat 300.288 kb on + strandat 300.289 kb on - strandat 300.289 kb on - strandat 300.307 kb on + strandat 300.307 kb on + strandat 300.308 kb on - strandat 300.311 kb on + strandat 300.312 kb on - strandat 300.314 kb on + strandat 300.315 kb on - strandat 300.333 kb on + strandat 300.333 kb on + strandat 300.334 kb on - strandat 300.334 kb on - strandat 300.354 kb on + strandat 300.355 kb on - strandat 300.436 kb on - strandat 300.462 kb on - strandat 300.463 kb on + strandat 300.463 kb on + strandat 300.463 kb on + strandat 300.467 kb on + strandat 300.467 kb on + strandat 300.467 kb on + strandat 300.468 kb on - strandat 300.472 kb on + strandat 300.531 kb on + strandat 300.532 kb on - strandat 300.553 kb on - strandat 300.610 kb on - strandat 300.612 kb on - strandat 300.612 kb on - strandat 300.612 kb on - strandat 300.615 kb on - strandat 300.637 kb on - strandat 300.670 kb on - strandat 300.689 kb on - strandat 300.738 kb on - strandat 300.758 kb on - strand, within BACOVA_01089at 300.761 kb on - strand, within BACOVA_01089at 300.767 kb on + strand, within BACOVA_01089at 300.768 kb on - strand, within BACOVA_01089at 300.783 kb on + strand, within BACOVA_01089at 300.816 kb on + strand, within BACOVA_01089at 300.817 kb on - strand, within BACOVA_01089at 300.840 kb on - strand, within BACOVA_01089at 300.847 kb on - strand, within BACOVA_01089at 300.890 kb on - strandat 300.892 kb on - strandat 300.955 kb on - strandat 300.955 kb on - strandat 300.957 kb on + strandat 300.966 kb on + strandat 301.033 kb on + strandat 301.094 kb on + strand, within BACOVA_01090at 301.105 kb on + strand, within BACOVA_01090at 301.126 kb on - strand, within BACOVA_01090at 301.126 kb on - strand, within BACOVA_01090at 301.204 kb on - strand, within BACOVA_01090at 301.205 kb on + strand, within BACOVA_01090at 301.206 kb on - strand, within BACOVA_01090at 301.206 kb on - strand, within BACOVA_01090at 301.213 kb on + strand, within BACOVA_01090at 301.222 kb on + strand, within BACOVA_01090at 301.223 kb on - strand, within BACOVA_01090at 301.250 kb on - strand, within BACOVA_01090at 301.261 kb on + strand, within BACOVA_01090at 301.262 kb on - strand, within BACOVA_01090at 301.289 kb on - strand, within BACOVA_01090at 301.339 kb on + strand, within BACOVA_01090at 301.360 kb on - strand, within BACOVA_01090at 301.360 kb on - strand, within BACOVA_01090at 301.360 kb on - strand, within BACOVA_01090at 301.360 kb on - strand, within BACOVA_01090at 301.379 kb on + strand, within BACOVA_01090at 301.463 kb on - strand, within BACOVA_01090at 301.496 kb on - strand, within BACOVA_01090at 301.505 kb on - strand, within BACOVA_01090at 301.540 kb on - strand, within BACOVA_01090at 301.559 kb on - strand, within BACOVA_01090at 301.607 kb on + strand, within BACOVA_01090at 301.608 kb on - strand, within BACOVA_01090at 301.633 kb on - strand, within BACOVA_01090at 301.639 kb on + strand, within BACOVA_01090at 301.640 kb on - strand, within BACOVA_01090at 301.660 kb on + strand, within BACOVA_01090at 301.660 kb on + strand, within BACOVA_01090at 301.662 kb on + strand, within BACOVA_01090at 301.734 kb on - strand, within BACOVA_01090at 301.734 kb on - strand, within BACOVA_01090at 301.735 kb on + strand, within BACOVA_01090at 301.735 kb on + strand, within BACOVA_01090at 301.736 kb on - strand, within BACOVA_01090at 301.779 kb on + strandat 301.780 kb on - strandat 301.821 kb on - strandat 301.848 kb on - strandat 301.851 kb on + strandat 301.853 kb on + strandat 301.854 kb on - strandat 301.854 kb on - strandat 301.856 kb on + strandat 301.857 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Columbia 1 x (C) complex media
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299,828 - +0.1
299,946 + -0.4
299,956 + -0.7
299,957 - +1.0
299,963 + -0.1
299,963 + -0.8
299,963 + +0.2
299,994 + BACOVA_01087 0.24 -0.2
299,994 + BACOVA_01087 0.24 -1.7
299,994 + BACOVA_01087 0.24 +1.2
300,001 + BACOVA_01087 0.27 +0.5
300,002 - BACOVA_01087 0.28 -0.5
300,020 + BACOVA_01087 0.36 +0.3
300,050 + BACOVA_01087 0.50 -1.2
300,050 + BACOVA_01087 0.50 -0.2
300,054 + BACOVA_01087 0.52 +0.3
300,054 + BACOVA_01087 0.52 +0.3
300,055 - BACOVA_01087 0.52 +0.7
300,055 - BACOVA_01087 0.52 -0.8
300,055 - BACOVA_01087 0.52 -0.4
300,055 - BACOVA_01087 0.52 +1.9
300,057 + BACOVA_01087 0.53 +0.6
300,058 - BACOVA_01087 0.54 +0.2
300,077 - BACOVA_01087 0.62 -0.0
300,080 - BACOVA_01087 0.64 +0.6
300,100 + BACOVA_01087 0.73 -0.4
300,121 - BACOVA_01087 0.83 -0.7
300,123 + BACOVA_01087 0.84 -0.1
300,124 - BACOVA_01087 0.84 +0.4
300,172 + -0.1
300,175 - -1.4
300,176 + -0.8
300,176 + +0.6
300,177 - -0.6
300,236 - -0.3
300,267 + +1.9
300,288 + +0.4
300,288 + -0.8
300,289 - -0.2
300,289 - -0.1
300,307 + -1.9
300,307 + +0.3
300,308 - -0.3
300,311 + +0.0
300,312 - -0.1
300,314 + +0.3
300,315 - +0.1
300,333 + -1.2
300,333 + -0.2
300,334 - +0.0
300,334 - -0.1
300,354 + +0.2
300,355 - -0.9
300,436 - -0.3
300,462 - +0.1
300,463 + +1.4
300,463 + -0.0
300,463 + -0.4
300,467 + -1.1
300,467 + -0.5
300,467 + +0.7
300,468 - -0.3
300,472 + -0.6
300,531 + -0.7
300,532 - -0.3
300,553 - +0.9
300,610 - -0.0
300,612 - +0.2
300,612 - +0.5
300,612 - -1.2
300,615 - +1.4
300,637 - +0.5
300,670 - -0.5
300,689 - +0.8
300,738 - -0.9
300,758 - BACOVA_01089 0.15 +1.3
300,761 - BACOVA_01089 0.17 +1.6
300,767 + BACOVA_01089 0.23 -0.8
300,768 - BACOVA_01089 0.23 +1.0
300,783 + BACOVA_01089 0.36 +0.0
300,816 + BACOVA_01089 0.63 +0.1
300,817 - BACOVA_01089 0.64 +0.6
300,840 - BACOVA_01089 0.83 +0.3
300,847 - BACOVA_01089 0.89 +0.5
300,890 - -1.0
300,892 - -0.3
300,955 - +0.1
300,955 - -0.2
300,957 + +0.1
300,966 + -2.0
301,033 + +0.3
301,094 + BACOVA_01090 0.14 +0.9
301,105 + BACOVA_01090 0.15 -0.5
301,126 - BACOVA_01090 0.18 +0.1
301,126 - BACOVA_01090 0.18 -0.4
301,204 - BACOVA_01090 0.27 -0.2
301,205 + BACOVA_01090 0.27 +0.1
301,206 - BACOVA_01090 0.27 -1.5
301,206 - BACOVA_01090 0.27 -0.0
301,213 + BACOVA_01090 0.28 -0.5
301,222 + BACOVA_01090 0.29 -0.3
301,223 - BACOVA_01090 0.29 -1.7
301,250 - BACOVA_01090 0.32 -0.8
301,261 + BACOVA_01090 0.33 +0.2
301,262 - BACOVA_01090 0.33 -0.3
301,289 - BACOVA_01090 0.36 +0.4
301,339 + BACOVA_01090 0.42 +0.0
301,360 - BACOVA_01090 0.44 +1.6
301,360 - BACOVA_01090 0.44 +0.3
301,360 - BACOVA_01090 0.44 +0.0
301,360 - BACOVA_01090 0.44 -1.1
301,379 + BACOVA_01090 0.46 -0.8
301,463 - BACOVA_01090 0.56 -0.1
301,496 - BACOVA_01090 0.60 +0.3
301,505 - BACOVA_01090 0.61 +0.1
301,540 - BACOVA_01090 0.65 +0.3
301,559 - BACOVA_01090 0.67 +0.2
301,607 + BACOVA_01090 0.72 +0.7
301,608 - BACOVA_01090 0.72 -0.3
301,633 - BACOVA_01090 0.75 -0.7
301,639 + BACOVA_01090 0.76 -0.8
301,640 - BACOVA_01090 0.76 -1.1
301,660 + BACOVA_01090 0.78 -0.9
301,660 + BACOVA_01090 0.78 -0.5
301,662 + BACOVA_01090 0.79 +0.2
301,734 - BACOVA_01090 0.87 +0.1
301,734 - BACOVA_01090 0.87 +0.5
301,735 + BACOVA_01090 0.87 -0.8
301,735 + BACOVA_01090 0.87 -1.7
301,736 - BACOVA_01090 0.87 -0.9
301,779 + -1.1
301,780 - -0.1
301,821 - +0.6
301,848 - -0.3
301,851 + -0.3
301,853 + +0.1
301,854 - -0.9
301,854 - -1.1
301,856 + -0.1
301,857 - +0.3

Or see this region's nucleotide sequence