Strain Fitness in Escherichia fergusonii Becca around EFB2_04070

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
4,279,990	+		EFB2_04069	0.18	-3.5
4,279,991	-		EFB2_04069	0.19	+0.4
4,280,004	+		EFB2_04069	0.20	-0.4
4,280,004	+		EFB2_04069	0.20	-0.3
4,280,004	+		EFB2_04069	0.20	-2.1
4,280,004	+		EFB2_04069	0.20	-1.9
4,280,004	+		EFB2_04069	0.20	-0.5
4,280,005	-		EFB2_04069	0.20	+3.1
4,280,005	-		EFB2_04069	0.20	-0.7
4,280,006	+		EFB2_04069	0.20	-0.8
4,280,006	+		EFB2_04069	0.20	+0.7
4,280,006	+		EFB2_04069	0.20	-0.1
4,280,006	+		EFB2_04069	0.20	-1.2
4,280,007	-		EFB2_04069	0.20	+0.6
4,280,007	-		EFB2_04069	0.20	-2.2
4,280,007	-		EFB2_04069	0.20	-0.3
4,280,007	-		EFB2_04069	0.20	+0.8
4,280,007	-		EFB2_04069	0.20	-2.2
4,280,007	-		EFB2_04069	0.20	-1.5
4,280,007	-		EFB2_04069	0.20	-1.3
4,280,007	-		EFB2_04069	0.20	+1.5
4,280,046	+		EFB2_04069	0.24	-0.2
4,280,046	+		EFB2_04069	0.24	-1.0
4,280,047	-		EFB2_04069	0.24	+0.5
4,280,047	-		EFB2_04069	0.24	+0.5
4,280,047	-		EFB2_04069	0.24	+0.1
4,280,049	+		EFB2_04069	0.24	+0.5
4,280,049	+		EFB2_04069	0.24	+1.6
4,280,049	+		EFB2_04069	0.24	+0.5
4,280,049	+		EFB2_04069	0.24	+1.3
4,280,049	+		EFB2_04069	0.24	+0.0
4,280,049	+		EFB2_04069	0.24	-1.0
4,280,049	+		EFB2_04069	0.24	+0.3
4,280,049	+		EFB2_04069	0.24	-0.1
4,280,049	+		EFB2_04069	0.24	-0.2
4,280,049	+		EFB2_04069	0.24	+0.1
4,280,049	+		EFB2_04069	0.24	+1.0
4,280,049	+		EFB2_04069	0.24	+1.2
4,280,049	+		EFB2_04069	0.24	-1.6
4,280,049	+		EFB2_04069	0.24	+3.4
4,280,049	+		EFB2_04069	0.24	+2.1
4,280,049	+		EFB2_04069	0.24	+0.7
4,280,049	+		EFB2_04069	0.24	+1.0
4,280,050	-		EFB2_04069	0.24	+1.0
4,280,050	-		EFB2_04069	0.24	+1.8
4,280,050	-		EFB2_04069	0.24	-0.6
4,280,050	-		EFB2_04069	0.24	-0.9
4,280,050	-		EFB2_04069	0.24	-0.3
4,280,050	-		EFB2_04069	0.24	+1.7
4,280,050	-		EFB2_04069	0.24	-1.4
4,280,050	-		EFB2_04069	0.24	+0.5
4,280,050	-		EFB2_04069	0.24	-0.3
4,280,050	-		EFB2_04069	0.24	+1.7
4,280,050	-		EFB2_04069	0.24	+0.9
4,280,050	-		EFB2_04069	0.24	+0.3
4,280,050	-		EFB2_04069	0.24	+0.2
4,280,050	-		EFB2_04069	0.24	-0.1
4,280,050	-		EFB2_04069	0.24	+0.5
4,280,050	-		EFB2_04069	0.24	-1.1
4,280,070	-		EFB2_04069	0.26	+0.6
4,280,110	-		EFB2_04069	0.30	+0.3
4,280,129	+		EFB2_04069	0.31	+1.3
4,280,129	+		EFB2_04069	0.31	-1.4
4,280,129	+		EFB2_04069	0.31	+0.6
4,280,129	+		EFB2_04069	0.31	+0.6
4,280,130	-		EFB2_04069	0.31	+1.0
4,280,130	-		EFB2_04069	0.31	+0.6
4,280,175	+		EFB2_04069	0.36	-0.8
4,280,175	+		EFB2_04069	0.36	-1.7
4,280,176	-		EFB2_04069	0.36	+0.6
4,280,176	-		EFB2_04069	0.36	-0.7
4,280,176	-		EFB2_04069	0.36	+0.9
4,280,176	-		EFB2_04069	0.36	+0.1
4,280,176	-		EFB2_04069	0.36	-2.1
4,280,222	+		EFB2_04069	0.40	-2.7
4,280,222	+		EFB2_04069	0.40	-0.8
4,280,222	+		EFB2_04069	0.40	+0.4
4,280,222	+		EFB2_04069	0.40	-0.7
4,280,222	+		EFB2_04069	0.40	+0.4
4,280,222	+		EFB2_04069	0.40	+0.1
4,280,223	-		EFB2_04069	0.40	-2.4
4,280,223	-		EFB2_04069	0.40	-0.2
4,280,223	-		EFB2_04069	0.40	+2.3
4,280,223	-		EFB2_04069	0.40	-2.1
4,280,223	-		EFB2_04069	0.40	+0.2
4,280,225	+		EFB2_04069	0.40	-0.9
4,280,225	+		EFB2_04069	0.40	+0.8
4,280,225	+		EFB2_04069	0.40	+3.0
4,280,225	+		EFB2_04069	0.40	-0.9
4,280,225	+		EFB2_04069	0.40	-0.5
4,280,225	+		EFB2_04069	0.40	+0.5
4,280,225	+		EFB2_04069	0.40	-0.6
4,280,226	-		EFB2_04069	0.40	+0.5
4,280,226	-		EFB2_04069	0.40	+1.1
4,280,226	-		EFB2_04069	0.40	-0.8
4,280,226	-		EFB2_04069	0.40	+0.3
4,280,226	-		EFB2_04069	0.40	+1.5
4,280,226	-		EFB2_04069	0.40	+1.0
4,280,226	-		EFB2_04069	0.40	+0.5
4,280,324	+		EFB2_04069	0.50	-1.0
4,280,324	+		EFB2_04069	0.50	-1.6
4,280,324	+		EFB2_04069	0.50	-0.0
4,280,324	+		EFB2_04069	0.50	+1.3
4,280,325	-		EFB2_04069	0.50	+1.5
4,280,328	+		EFB2_04069	0.50	-1.2
4,280,328	+		EFB2_04069	0.50	+1.2
4,280,328	+		EFB2_04069	0.50	+0.5
4,280,328	+		EFB2_04069	0.50	-0.4
4,280,328	+		EFB2_04069	0.50	-1.1
4,280,328	+		EFB2_04069	0.50	-0.5
4,280,328	+		EFB2_04069	0.50	-2.1
4,280,328	+		EFB2_04069	0.50	+0.3
4,280,328	+		EFB2_04069	0.50	+1.8
4,280,328	+		EFB2_04069	0.50	+0.4
4,280,328	+		EFB2_04069	0.50	+0.7
4,280,328	+		EFB2_04069	0.50	-2.8
4,280,328	+		EFB2_04069	0.50	-3.1
4,280,328	+		EFB2_04069	0.50	+1.4
4,280,328	+		EFB2_04069	0.50	-0.0
4,280,328	+		EFB2_04069	0.50	-2.1
4,280,328	+		EFB2_04069	0.50	+1.1
4,280,328	+		EFB2_04069	0.50	+0.9
4,280,328	+		EFB2_04069	0.50	-1.3
4,280,328	+		EFB2_04069	0.50	-0.9
4,280,328	+		EFB2_04069	0.50	-3.4
4,280,328	+		EFB2_04069	0.50	-0.8
4,280,328	+		EFB2_04069	0.50	-0.6
4,280,329	-		EFB2_04069	0.50	-0.7
4,280,329	-		EFB2_04069	0.50	-1.9
4,280,329	-		EFB2_04069	0.50	-0.3
4,280,329	-		EFB2_04069	0.50	-2.3
4,280,329	-		EFB2_04069	0.50	+0.3
4,280,329	-		EFB2_04069	0.50	-3.1
4,280,329	-		EFB2_04069	0.50	+0.6
4,280,329	-		EFB2_04069	0.50	-0.5
4,280,329	-		EFB2_04069	0.50	+1.5
4,280,329	-		EFB2_04069	0.50	+1.0
4,280,329	-		EFB2_04069	0.50	+1.2
4,280,329	-		EFB2_04069	0.50	-3.6
4,280,329	-		EFB2_04069	0.50	-0.3
4,280,329	-		EFB2_04069	0.50	-0.7
4,280,329	-		EFB2_04069	0.50	-0.6
4,280,329	-		EFB2_04069	0.50	+1.0
4,280,329	-		EFB2_04069	0.50	+0.3
4,280,329	-		EFB2_04069	0.50	+1.8
4,280,329	-		EFB2_04069	0.50	+1.2
4,280,329	-		EFB2_04069	0.50	+1.5
4,280,329	-		EFB2_04069	0.50	-2.4
4,280,329	-		EFB2_04069	0.50	+0.4
4,280,329	-		EFB2_04069	0.50	+1.1
4,280,331	+		EFB2_04069	0.50	-0.1
4,280,331	+		EFB2_04069	0.50	-0.7
4,280,331	+		EFB2_04069	0.50	-0.4
4,280,331	+		EFB2_04069	0.50	+2.0
4,280,331	+		EFB2_04069	0.50	-0.1
4,280,331	+		EFB2_04069	0.50	+0.3
4,280,331	+		EFB2_04069	0.50	-1.1
4,280,332	-		EFB2_04069	0.50	+0.5
4,280,332	-		EFB2_04069	0.50	-0.5
4,280,332	-		EFB2_04069	0.50	+0.9
4,280,332	-		EFB2_04069	0.50	+1.1
4,280,332	-		EFB2_04069	0.50	-1.5
4,280,332	-		EFB2_04069	0.50	+1.3
4,280,332	-		EFB2_04069	0.50	+0.0
4,280,332	-		EFB2_04069	0.50	-0.7
4,280,357	+		EFB2_04069	0.53	-0.2
4,280,357	+		EFB2_04069	0.53	+0.2
4,280,358	-		EFB2_04069	0.53	+0.0
4,280,368	+		EFB2_04069	0.54	+0.8
4,280,409	+		EFB2_04069	0.57	+1.7
4,280,410	-		EFB2_04069	0.58	+0.3
4,280,410	-		EFB2_04069	0.58	-0.4
4,280,424	-		EFB2_04069	0.59	-0.1
4,280,435	+		EFB2_04069	0.60	+0.6
4,280,435	+		EFB2_04069	0.60	+0.6
4,280,436	-		EFB2_04069	0.60	+0.3
4,280,436	-		EFB2_04069	0.60	+0.9
4,280,436	-		EFB2_04069	0.60	-0.7
4,280,436	-		EFB2_04069	0.60	+1.0
4,280,436	-		EFB2_04069	0.60	-2.6
4,280,436	-		EFB2_04069	0.60	+1.3
4,280,460	+		EFB2_04069	0.62	+1.2
4,280,460	+		EFB2_04069	0.62	+1.4
4,280,460	+		EFB2_04069	0.62	+0.5
4,280,460	+		EFB2_04069	0.62	+1.7
4,280,460	+		EFB2_04069	0.62	+0.4
4,280,460	+		EFB2_04069	0.62	-0.8
4,280,460	+		EFB2_04069	0.62	+0.2
4,280,460	+		EFB2_04069	0.62	-1.4
4,280,460	+		EFB2_04069	0.62	-2.1
4,280,460	+		EFB2_04069	0.62	-1.7
4,280,460	+		EFB2_04069	0.62	+0.8
4,280,461	-		EFB2_04069	0.62	-2.3
4,280,461	-		EFB2_04069	0.62	+0.3
4,280,461	-		EFB2_04069	0.62	+1.1
4,280,461	-		EFB2_04069	0.62	+0.3
4,280,461	-		EFB2_04069	0.62	+0.1
4,280,461	-		EFB2_04069	0.62	+0.8
4,280,461	-		EFB2_04069	0.62	+0.6
4,280,461	-		EFB2_04069	0.62	-3.2
4,280,461	-		EFB2_04069	0.62	+1.0
4,280,461	-		EFB2_04069	0.62	+0.0
4,280,461	-		EFB2_04069	0.62	+0.0
4,280,461	-		EFB2_04069	0.62	+1.1
4,280,461	-		EFB2_04069	0.62	+0.7
4,280,461	-		EFB2_04069	0.62	-3.0
4,280,461	-		EFB2_04069	0.62	+1.2
4,280,461	-		EFB2_04069	0.62	+2.1
4,280,461	-		EFB2_04069	0.62	-3.7
4,280,461	-		EFB2_04069	0.62	-1.7
4,280,462	+		EFB2_04069	0.62	-0.5
4,280,462	+		EFB2_04069	0.62	+0.1
4,280,462	+		EFB2_04069	0.62	-0.6
4,280,462	+		EFB2_04069	0.62	+1.1
4,280,462	+		EFB2_04069	0.62	+1.4
4,280,462	+		EFB2_04069	0.62	+0.6
4,280,462	+		EFB2_04069	0.62	+0.4
4,280,462	+		EFB2_04069	0.62	-0.4
4,280,462	+		EFB2_04069	0.62	-0.3
4,280,462	+		EFB2_04069	0.62	+0.2
4,280,462	+		EFB2_04069	0.62	+0.7
4,280,462	+		EFB2_04069	0.62	+0.9
4,280,462	+		EFB2_04069	0.62	+0.9
4,280,462	+		EFB2_04069	0.62	-2.9
4,280,462	+		EFB2_04069	0.62	+1.0
4,280,462	+		EFB2_04069	0.62	-0.2
4,280,462	+		EFB2_04069	0.62	+0.8
4,280,463	-		EFB2_04069	0.62	-0.7
4,280,463	-		EFB2_04069	0.62	+0.1
4,280,463	-		EFB2_04069	0.62	-3.0
4,280,463	-		EFB2_04069	0.62	+0.3
4,280,463	-		EFB2_04069	0.62	+1.3
4,280,463	-		EFB2_04069	0.62	-0.7
4,280,463	-		EFB2_04069	0.62	-0.3
4,280,463	-		EFB2_04069	0.62	-1.3
4,280,463	-		EFB2_04069	0.62	+1.1
4,280,463	-		EFB2_04069	0.62	-3.2
4,280,463	-		EFB2_04069	0.62	-0.1
4,280,463	-		EFB2_04069	0.62	+1.2
4,280,486	-		EFB2_04069	0.65	-0.1
4,280,612	+		EFB2_04069	0.76	-0.5
4,280,612	+		EFB2_04069	0.76	+1.8
4,280,613	-		EFB2_04069	0.76	+0.5
4,280,613	-		EFB2_04069	0.76	+0.2
4,280,613	-		EFB2_04069	0.76	-0.9
4,280,655	+		EFB2_04069	0.80	+0.4
4,280,656	-		EFB2_04069	0.80	-2.7
4,280,656	-		EFB2_04069	0.80	-0.5
4,280,656	-		EFB2_04069	0.80	-1.0
4,280,657	+		EFB2_04069	0.81	-0.1
4,280,657	+		EFB2_04069	0.81	-0.2
4,280,657	+		EFB2_04069	0.81	-0.5
4,280,657	+		EFB2_04069	0.81	-0.6
4,280,657	+		EFB2_04069	0.81	-0.5
4,280,657	+		EFB2_04069	0.81	-3.3
4,280,657	+		EFB2_04069	0.81	-0.4
4,280,657	+		EFB2_04069	0.81	+0.4
4,280,657	+		EFB2_04069	0.81	-1.4
4,280,657	+		EFB2_04069	0.81	+0.6
4,280,657	+		EFB2_04069	0.81	+0.2
4,280,657	+		EFB2_04069	0.81	-0.5
4,280,657	+		EFB2_04069	0.81	+0.1
4,280,657	+		EFB2_04069	0.81	+0.6
4,280,657	+		EFB2_04069	0.81	+0.6
4,280,658	-		EFB2_04069	0.81	-1.7
4,280,658	-		EFB2_04069	0.81	-0.6
4,280,658	-		EFB2_04069	0.81	+1.1
4,280,658	-		EFB2_04069	0.81	-2.2
4,280,658	-		EFB2_04069	0.81	-0.4
4,280,658	-		EFB2_04069	0.81	+0.4
4,280,658	-		EFB2_04069	0.81	-0.1
4,280,658	-		EFB2_04069	0.81	-0.9
4,280,658	-		EFB2_04069	0.81	+0.2
4,280,658	-		EFB2_04069	0.81	-0.2
4,280,658	-		EFB2_04069	0.81	+1.4
4,280,658	-		EFB2_04069	0.81	-1.1
4,280,658	-		EFB2_04069	0.81	+0.4
4,280,658	-		EFB2_04069	0.81	+1.2
4,280,658	-		EFB2_04069	0.81	-0.7
4,280,658	-		EFB2_04069	0.81	+1.8
4,280,696	+		EFB2_04069	0.84	+0.9
4,280,696	+		EFB2_04069	0.84	-1.6
4,280,697	-		EFB2_04069	0.84	-1.0
4,280,713	-		EFB2_04069	0.86	+0.6
4,280,713	-		EFB2_04069	0.86	-0.7
4,280,713	-		EFB2_04069	0.86	+1.5
4,280,713	-		EFB2_04069	0.86	-2.8
4,280,727	+		EFB2_04069	0.87	-0.1
4,280,727	+		EFB2_04069	0.87	+0.2
4,280,727	+		EFB2_04069	0.87	-1.4
4,280,727	+		EFB2_04069	0.87	+0.4
4,280,728	-		EFB2_04069	0.87	+0.7
4,280,728	-		EFB2_04069	0.87	+0.5
4,280,815	+				-0.8
4,280,833	-				+0.4
4,280,833	-				+1.2
4,280,833	-				+1.1
4,280,835	+				-0.1
4,280,835	+				-1.8
4,280,835	+				-1.8
4,280,836	-				-0.2
4,280,836	-				+0.3
4,280,836	-				+0.1
4,280,836	-				+1.2
4,280,845	+				+0.5
4,280,846	-				-1.6
4,280,851	+				+0.0
4,280,852	-				-0.9
4,280,852	-				+0.9
4,280,852	-				-0.9
4,280,904	+				+0.9
4,280,905	-				+0.7
4,280,914	+				-1.1
4,280,914	+				+1.6
4,280,914	+				-0.2
4,280,915	-				+1.6
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