Strain Fitness in Escherichia fergusonii Becca around EFB2_02892

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
3,030,090	-				-3.1
3,030,104	+				+1.2
3,030,104	+				-1.4
3,030,104	+				-1.3
3,030,104	+				+0.4
3,030,104	+				-2.6
3,030,104	+				-0.6
3,030,104	+				+1.1
3,030,105	-				-0.6
3,030,105	-				-0.2
3,030,105	-				-0.5
3,030,105	-				-1.3
3,030,105	-				+0.9
3,030,105	-				-2.7
3,030,105	-				+0.2
3,030,105	-				-1.7
3,030,105	-				-1.9
3,030,105	-				+0.2
3,030,105	-				+2.9
3,030,122	+				+2.4
3,030,122	+				+2.2
3,030,122	+				-0.7
3,030,123	-				-0.4
3,030,123	-				-0.0
3,030,123	-				-2.0
3,030,123	-				-2.1
3,030,123	-				-0.1
3,030,157	-				+0.7
3,030,163	-				+1.4
3,030,163	-				-1.3
3,030,163	-				+2.9
3,030,163	-				+3.3
3,030,163	-				-2.5
3,030,163	-				+1.4
3,030,172	-				+1.3
3,030,172	-				+1.8
3,030,172	-				-1.3
3,030,172	-				+0.0
3,030,172	-				-1.4
3,030,173	+				+0.5
3,030,173	+				+1.7
3,030,173	+				-0.8
3,030,173	+				+3.2
3,030,173	+				-2.6
3,030,174	-				-0.1
3,030,174	-				-1.5
3,030,174	-				-2.8
3,030,174	-				-0.8
3,030,174	-				-1.4
3,030,174	-				-0.1
3,030,174	-				-0.1
3,030,174	-				+1.1
3,030,174	-				-1.2
3,030,174	-				+0.7
3,030,174	-				+0.9
3,030,174	-				+1.5
3,030,174	-				-2.6
3,030,206	+				-0.6
3,030,206	+				+0.6
3,030,206	+				-1.1
3,030,206	+				-3.3
3,030,206	+				-0.4
3,030,206	+				-1.0
3,030,206	+				-1.8
3,030,207	-				-0.8
3,030,207	-				-0.1
3,030,207	-				+2.2
3,030,207	-				-1.5
3,030,207	-				+0.8
3,030,207	-				+0.1
3,030,207	-				-0.1
3,030,207	-				-1.1
3,030,207	-				+1.4
3,030,207	-				-0.3
3,030,207	-				+0.6
3,030,207	-				+1.9
3,030,207	-				+0.6
3,030,216	+				+0.9
3,030,216	+				-0.4
3,030,216	+				-1.7
3,030,216	+				-2.1
3,030,217	-		EFB2_02891	0.10	+0.8
3,030,217	-		EFB2_02891	0.10	+1.4
3,030,217	-		EFB2_02891	0.10	-2.4
3,030,217	-		EFB2_02891	0.10	+0.1
3,030,217	-		EFB2_02891	0.10	+0.3
3,030,217	-		EFB2_02891	0.10	-2.0
3,030,217	-		EFB2_02891	0.10	-2.3
3,030,217	-		EFB2_02891	0.10	-1.1
3,030,217	-		EFB2_02891	0.10	-1.8
3,030,217	-		EFB2_02891	0.10	+1.2
3,030,217	-		EFB2_02891	0.10	+1.3
3,030,282	+		EFB2_02891	0.17	+0.9
3,030,282	+		EFB2_02891	0.17	-0.1
3,030,282	+		EFB2_02891	0.17	+0.6
3,030,283	-		EFB2_02891	0.17	-1.5
3,030,283	-		EFB2_02891	0.17	+1.9
3,030,286	+		EFB2_02891	0.17	-1.4
3,030,286	+		EFB2_02891	0.17	+0.2
3,030,286	+		EFB2_02891	0.17	-1.1
3,030,287	-		EFB2_02891	0.17	-1.1
3,030,287	-		EFB2_02891	0.17	-0.9
3,030,287	-		EFB2_02891	0.17	+0.2
3,030,287	-		EFB2_02891	0.17	+0.9
3,030,287	-		EFB2_02891	0.17	-1.0
3,030,287	-		EFB2_02891	0.17	-2.6
3,030,287	-		EFB2_02891	0.17	-1.8
3,030,287	-		EFB2_02891	0.17	-0.2
3,030,287	-		EFB2_02891	0.17	+1.0
3,030,385	-		EFB2_02891	0.28	-2.0
3,030,526	-		EFB2_02891	0.42	+1.8
3,030,528	+		EFB2_02891	0.43	+1.6
3,030,529	-		EFB2_02891	0.43	-0.8
3,030,529	-		EFB2_02891	0.43	+1.1
3,030,529	-		EFB2_02891	0.43	-0.1
3,030,529	-		EFB2_02891	0.43	-2.2
3,030,529	-		EFB2_02891	0.43	+0.9
3,030,529	-		EFB2_02891	0.43	+0.6
3,030,529	-		EFB2_02891	0.43	-2.8
3,030,552	+		EFB2_02891	0.45	-1.5
3,030,552	+		EFB2_02891	0.45	+0.2
3,030,552	+		EFB2_02891	0.45	+1.6
3,030,552	+		EFB2_02891	0.45	-0.8
3,030,552	+		EFB2_02891	0.45	+4.2
3,030,552	+		EFB2_02891	0.45	-0.6
3,030,552	+		EFB2_02891	0.45	-0.6
3,030,553	-		EFB2_02891	0.45	+1.3
3,030,553	-		EFB2_02891	0.45	+0.1
3,030,553	-		EFB2_02891	0.45	-1.0
3,030,553	-		EFB2_02891	0.45	-1.3
3,030,553	-		EFB2_02891	0.45	-1.4
3,030,559	+		EFB2_02891	0.46	-0.4
3,030,559	+		EFB2_02891	0.46	-0.1
3,030,559	+		EFB2_02891	0.46	-3.0
3,030,559	+		EFB2_02891	0.46	-2.8
3,030,560	-		EFB2_02891	0.46	+0.1
3,030,560	-		EFB2_02891	0.46	+0.4
3,030,560	-		EFB2_02891	0.46	+0.2
3,030,560	-		EFB2_02891	0.46	-1.4
3,030,560	-		EFB2_02891	0.46	+0.0
3,030,560	-		EFB2_02891	0.46	-0.8
3,030,595	-		EFB2_02891	0.50	-1.3
3,030,595	-		EFB2_02891	0.50	+3.2
3,030,595	-		EFB2_02891	0.50	-0.0
3,030,595	-		EFB2_02891	0.50	-1.6
3,030,595	-		EFB2_02891	0.50	-1.6
3,030,595	-		EFB2_02891	0.50	+0.7
3,030,597	+		EFB2_02891	0.50	-0.8
3,030,597	+		EFB2_02891	0.50	+0.2
3,030,598	-		EFB2_02891	0.50	+1.0
3,030,598	-		EFB2_02891	0.50	-1.7
3,030,598	-		EFB2_02891	0.50	-1.0
3,030,617	+		EFB2_02891	0.52	+1.2
3,030,617	+		EFB2_02891	0.52	+2.2
3,030,617	+		EFB2_02891	0.52	+0.6
3,030,617	+		EFB2_02891	0.52	-1.5
3,030,617	+		EFB2_02891	0.52	-1.8
3,030,618	-		EFB2_02891	0.52	-1.6
3,030,618	-		EFB2_02891	0.52	-1.1
3,030,618	-		EFB2_02891	0.52	-3.1
3,030,618	-		EFB2_02891	0.52	+0.3
3,030,618	-		EFB2_02891	0.52	+1.9
3,030,618	-		EFB2_02891	0.52	+0.0
3,030,618	-		EFB2_02891	0.52	-1.4
3,030,618	-		EFB2_02891	0.52	-1.4
3,030,618	-		EFB2_02891	0.52	+1.3
3,030,636	+		EFB2_02891	0.54	-2.6
3,030,657	+		EFB2_02891	0.56	+1.2
3,030,658	-		EFB2_02891	0.56	+0.3
3,030,658	-		EFB2_02891	0.56	+0.8
3,030,660	-		EFB2_02891	0.56	+1.2
3,030,712	+		EFB2_02891	0.62	+1.1
3,030,712	+		EFB2_02891	0.62	-0.1
3,030,712	+		EFB2_02891	0.62	+2.0
3,030,713	-		EFB2_02891	0.62	-1.9
3,030,736	-		EFB2_02891	0.64	-0.0
3,030,788	+		EFB2_02891	0.70	+0.1
3,030,890	+		EFB2_02891	0.81	-2.1
3,030,891	-		EFB2_02891	0.81	+0.6
3,030,891	-		EFB2_02891	0.81	+3.5
3,030,998	+				-1.1
3,030,998	+				-2.5
3,030,999	-				+0.8
3,030,999	-				-1.0
3,031,049	+				+1.7
3,031,050	-				+3.5
3,031,050	-				-0.3
3,031,050	-				-0.2
3,031,077	+				-1.0
3,031,077	+				+0.4
3,031,077	+				-0.1
3,031,078	-				-0.8
3,031,078	-				-0.2
3,031,154	-				+0.6
3,031,154	-				-0.7
3,031,154	-				+0.7
3,031,154	-				+0.3
3,031,154	-				-0.3
3,031,154	-				+1.4
3,031,154	-				-1.4
3,031,156	+				-0.0
3,031,156	+				-1.2
3,031,157	-				-1.7
3,031,157	-				-0.8
3,031,157	-				-1.0
3,031,247	+				-1.0
3,031,247	+				+1.2
3,031,247	+				-0.6
3,031,247	+				-0.5
3,031,247	+				+1.2
3,031,248	-				+1.0
3,031,248	-				-2.1
3,031,248	-				+0.2
3,031,248	-				-1.2
3,031,248	-				-1.1
3,031,248	-				+0.1
3,031,248	-				-0.1
3,031,287	-		EFB2_02892	0.12	-3.1
3,031,315	+		EFB2_02892	0.14	-0.3
3,031,315	+		EFB2_02892	0.14	-0.9
3,031,315	+		EFB2_02892	0.14	+2.2
3,031,315	+		EFB2_02892	0.14	-1.1
3,031,315	+		EFB2_02892	0.14	-0.6
3,031,316	-		EFB2_02892	0.14	+1.3
3,031,316	-		EFB2_02892	0.14	-0.4
3,031,316	-		EFB2_02892	0.14	+1.0
3,031,316	-		EFB2_02892	0.14	-1.1
3,031,316	-		EFB2_02892	0.14	-0.1
3,031,352	+		EFB2_02892	0.16	-0.1
3,031,352	+		EFB2_02892	0.16	-0.4
3,031,352	+		EFB2_02892	0.16	+0.4
3,031,352	+		EFB2_02892	0.16	+1.3
3,031,353	-		EFB2_02892	0.16	-1.4
3,031,452	+		EFB2_02892	0.22	+1.0
3,031,453	-		EFB2_02892	0.22	-0.6
3,031,453	-		EFB2_02892	0.22	-2.0
3,031,453	-		EFB2_02892	0.22	+0.5
3,031,453	-		EFB2_02892	0.22	-1.9
3,031,453	-		EFB2_02892	0.22	+1.0
3,031,453	-		EFB2_02892	0.22	+2.0
3,031,453	-		EFB2_02892	0.22	-0.3
3,031,453	-		EFB2_02892	0.22	-1.9
3,031,455	+		EFB2_02892	0.22	-0.6
3,031,455	+		EFB2_02892	0.22	-2.0
3,031,455	+		EFB2_02892	0.22	+0.2
3,031,455	+		EFB2_02892	0.22	-2.0
3,031,455	+		EFB2_02892	0.22	-1.4
3,031,455	+		EFB2_02892	0.22	-2.1
3,031,455	+		EFB2_02892	0.22	-1.8
3,031,455	+		EFB2_02892	0.22	-0.2
3,031,455	+		EFB2_02892	0.22	-0.4
3,031,455	+		EFB2_02892	0.22	+0.2
3,031,455	+		EFB2_02892	0.22	-0.3
3,031,455	+		EFB2_02892	0.22	+2.2
3,031,455	+		EFB2_02892	0.22	+0.3
3,031,455	+		EFB2_02892	0.22	+1.0
3,031,455	+		EFB2_02892	0.22	-0.1
3,031,455	+		EFB2_02892	0.22	+1.3
3,031,455	+		EFB2_02892	0.22	+3.0
3,031,455	+		EFB2_02892	0.22	-2.1
3,031,455	+		EFB2_02892	0.22	-1.2
3,031,455	+		EFB2_02892	0.22	+0.6
3,031,455	+		EFB2_02892	0.22	-1.4
3,031,455	+		EFB2_02892	0.22	+1.0
3,031,455	+		EFB2_02892	0.22	-0.6
3,031,455	+		EFB2_02892	0.22	-1.1
3,031,456	-		EFB2_02892	0.23	+1.1
3,031,456	-		EFB2_02892	0.23	-0.1
3,031,456	-		EFB2_02892	0.23	-0.8
3,031,456	-		EFB2_02892	0.23	+2.7
3,031,456	-		EFB2_02892	0.23	-0.5
3,031,456	-		EFB2_02892	0.23	-2.1
3,031,456	-		EFB2_02892	0.23	-3.3
3,031,456	-		EFB2_02892	0.23	+0.9
3,031,456	-		EFB2_02892	0.23	-3.0
3,031,456	-		EFB2_02892	0.23	+0.9
3,031,456	-		EFB2_02892	0.23	+1.5
3,031,456	-		EFB2_02892	0.23	+0.5
3,031,456	-		EFB2_02892	0.23	+0.9
3,031,456	-		EFB2_02892	0.23	-0.6
3,031,456	-		EFB2_02892	0.23	-1.0
3,031,456	-		EFB2_02892	0.23	-0.6
3,031,456	-		EFB2_02892	0.23	+0.5
3,031,456	-		EFB2_02892	0.23	+3.8
3,031,456	-		EFB2_02892	0.23	-2.1
3,031,482	+		EFB2_02892	0.24	-1.7
3,031,526	+		EFB2_02892	0.27	+1.4
3,031,526	+		EFB2_02892	0.27	-0.5
3,031,559	+		EFB2_02892	0.29	-1.6
3,031,559	+		EFB2_02892	0.29	+0.8
3,031,583	+		EFB2_02892	0.30	+0.9
3,031,583	+		EFB2_02892	0.30	-2.2
3,031,583	+		EFB2_02892	0.30	-0.5
3,031,592	+		EFB2_02892	0.31	+1.3
3,031,593	-		EFB2_02892	0.31	+1.4
3,031,593	-		EFB2_02892	0.31	-1.6
3,031,593	-		EFB2_02892	0.31	-1.8
3,031,593	-		EFB2_02892	0.31	-0.8
3,031,593	-		EFB2_02892	0.31	+1.7
3,031,593	-		EFB2_02892	0.31	+2.1
3,031,595	+		EFB2_02892	0.31	-2.1
3,031,596	-		EFB2_02892	0.31	-1.0
3,031,596	-		EFB2_02892	0.31	-3.8
3,031,596	-		EFB2_02892	0.31	+2.0
3,031,625	+		EFB2_02892	0.33	-1.4
3,031,625	+		EFB2_02892	0.33	-0.6
3,031,625	+		EFB2_02892	0.33	-2.1
3,031,626	-		EFB2_02892	0.33	+2.2
3,031,626	-		EFB2_02892	0.33	+1.2
3,031,626	-		EFB2_02892	0.33	-1.0
3,031,626	-		EFB2_02892	0.33	-3.0
3,031,629	-		EFB2_02892	0.33	+0.2
3,031,646	-		EFB2_02892	0.34	-1.7
3,031,678	-		EFB2_02892	0.36	-2.0
3,031,713	-		EFB2_02892	0.38	-1.5
3,031,737	-		EFB2_02892	0.40	-0.6
3,031,841	+		EFB2_02892	0.46	+2.2
3,031,841	+		EFB2_02892	0.46	-1.7
3,031,842	-		EFB2_02892	0.46	-0.3
3,031,844	+		EFB2_02892	0.46	-1.3
3,031,844	+		EFB2_02892	0.46	-0.8
3,031,845	-		EFB2_02892	0.46	-1.4
3,031,845	-		EFB2_02892	0.46	-0.2
3,031,845	-		EFB2_02892	0.46	+2.3
3,031,845	-		EFB2_02892	0.46	+0.9
3,031,845	-		EFB2_02892	0.46	-0.4
3,031,902	-		EFB2_02892	0.50	-1.4
3,031,909	-		EFB2_02892	0.50	-0.6
3,031,929	-		EFB2_02892	0.51	-0.8
3,031,943	+		EFB2_02892	0.52	+1.2
3,031,943	+		EFB2_02892	0.52	+1.6
3,031,951	+		EFB2_02892	0.53	+0.8
3,031,951	+		EFB2_02892	0.53	+0.9
3,031,951	+		EFB2_02892	0.53	+2.0
3,031,951	+		EFB2_02892	0.53	+0.6
3,031,951	+		EFB2_02892	0.53	+0.7
3,031,951	+		EFB2_02892	0.53	+0.7
3,031,951	+		EFB2_02892	0.53	+1.3
3,031,951	+		EFB2_02892	0.53	+1.2
3,031,951	+		EFB2_02892	0.53	+2.6
3,031,951	+		EFB2_02892	0.53	+0.6
3,031,951	+		EFB2_02892	0.53	-1.1
3,031,951	+		EFB2_02892	0.53	-0.2
3,031,951	+		EFB2_02892	0.53	+1.0
3,031,951	+		EFB2_02892	0.53	-0.6
3,031,952	-		EFB2_02892	0.53	-0.3
3,031,952	-		EFB2_02892	0.53	+1.2
3,031,952	-		EFB2_02892	0.53	-1.0
3,031,952	-		EFB2_02892	0.53	-1.3
3,031,952	-		EFB2_02892	0.53	-2.3
3,031,952	-		EFB2_02892	0.53	+1.0
3,031,952	-		EFB2_02892	0.53	-1.9
3,032,012	+		EFB2_02892	0.56	+1.4
3,032,013	-		EFB2_02892	0.56	+0.3
3,032,013	-		EFB2_02892	0.56	-1.5
3,032,033	-		EFB2_02892	0.58	+1.4
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3,033,528	+		EFB2_02893	0.78	+1.0
3,033,528	+		EFB2_02893	0.78	-1.9
3,033,528	+		EFB2_02893	0.78	+0.7
3,033,528	+		EFB2_02893	0.78	+1.2
3,033,528	+		EFB2_02893	0.78	-2.2
3,033,529	-		EFB2_02893	0.78	+0.3
3,033,529	-		EFB2_02893	0.78	-1.7
3,033,529	-		EFB2_02893	0.78	-0.8
3,033,529	-		EFB2_02893	0.78	-0.4
3,033,529	-		EFB2_02893	0.78	-1.1
3,033,529	-		EFB2_02893	0.78	-0.1
3,033,529	-		EFB2_02893	0.78	+1.2
3,033,529	-		EFB2_02893	0.78	+0.7
3,033,569	+		EFB2_02893	0.82	-1.6
3,033,641	-		EFB2_02893	0.90	-3.1
3,033,674	+				-0.4
3,033,675	-				+0.2
3,033,675	-				-1.0
3,033,675	-				-0.7
3,033,675	-				+0.1
3,033,675	-				+0.1
3,033,675	-				+0.2
3,033,716	+				-0.4
3,033,716	+				+1.1
3,033,717	-				-0.5