Strain Fitness in Escherichia fergusonii Becca around EFB2_02578

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
2,723,804	+		EFB2_02576	0.57	+1.3
2,723,804	+		EFB2_02576	0.57	-0.1
2,723,804	+		EFB2_02576	0.57	-0.3
2,723,804	+		EFB2_02576	0.57	-0.8
2,723,804	+		EFB2_02576	0.57	+0.4
2,723,804	+		EFB2_02576	0.57	+0.3
2,723,805	-		EFB2_02576	0.57	+1.2
2,723,805	-		EFB2_02576	0.57	-1.9
2,723,842	+		EFB2_02576	0.61	-0.7
2,723,842	+		EFB2_02576	0.61	+0.5
2,723,842	+		EFB2_02576	0.61	-0.9
2,723,842	+		EFB2_02576	0.61	+0.9
2,723,842	+		EFB2_02576	0.61	-0.4
2,723,843	-		EFB2_02576	0.61	+0.1
2,723,876	+		EFB2_02576	0.64	+0.5
2,723,876	+		EFB2_02576	0.64	+1.0
2,723,876	+		EFB2_02576	0.64	-4.0
2,723,876	+		EFB2_02576	0.64	+0.2
2,723,876	+		EFB2_02576	0.64	+0.9
2,723,877	-		EFB2_02576	0.64	+2.7
2,723,877	-		EFB2_02576	0.64	-0.8
2,723,877	-		EFB2_02576	0.64	+0.0
2,723,935	+		EFB2_02576	0.70	-1.1
2,723,935	+		EFB2_02576	0.70	+1.1
2,723,935	+		EFB2_02576	0.70	-0.2
2,723,936	-		EFB2_02576	0.70	+0.4
2,724,020	+		EFB2_02576	0.78	+0.1
2,724,020	+		EFB2_02576	0.78	-0.0
2,724,020	+		EFB2_02576	0.78	-0.9
2,724,020	+		EFB2_02576	0.78	-1.1
2,724,020	+		EFB2_02576	0.78	-0.2
2,724,020	+		EFB2_02576	0.78	+2.9
2,724,020	+		EFB2_02576	0.78	+0.1
2,724,021	-		EFB2_02576	0.79	+0.7
2,724,021	-		EFB2_02576	0.79	+0.2
2,724,052	+		EFB2_02576	0.82	+0.9
2,724,052	+		EFB2_02576	0.82	+0.3
2,724,052	+		EFB2_02576	0.82	-0.3
2,724,052	+		EFB2_02576	0.82	+0.5
2,724,052	+		EFB2_02576	0.82	-0.5
2,724,081	+		EFB2_02576	0.85	-0.8
2,724,081	+		EFB2_02576	0.85	-0.3
2,724,081	+		EFB2_02576	0.85	-2.8
2,724,081	+		EFB2_02576	0.85	-2.7
2,724,081	+		EFB2_02576	0.85	-0.9
2,724,081	+		EFB2_02576	0.85	-1.3
2,724,082	-		EFB2_02576	0.85	-1.1
2,724,160	+				+1.5
2,724,160	+				+0.5
2,724,160	+				+0.5
2,724,160	+				+0.7
2,724,161	-				-1.9
2,724,161	-				-2.3
2,724,172	+				+2.3
2,724,172	+				-0.3
2,724,172	+				+0.3
2,724,172	+				+0.7
2,724,172	+				-2.2
2,724,172	+				-1.0
2,724,172	+				+0.3
2,724,173	-				-1.6
2,724,173	-				+1.6
2,724,186	+				-0.1
2,724,230	+				-0.5
2,724,230	+				-0.4
2,724,231	-				-1.0
2,724,264	+				-2.1
2,724,264	+				+1.5
2,724,264	+				+0.0
2,724,265	-				-0.8
2,724,265	-				-2.4
2,724,265	-				-0.3
2,724,272	+				+0.7
2,724,272	+				-0.8
2,724,272	+				-0.2
2,724,297	+				+1.6
2,724,297	+				+1.7
2,724,297	+				-1.7
2,724,297	+				-1.6
2,724,298	-				+0.8
2,724,298	-				+1.2
2,724,298	-				-0.3
2,724,309	-				+0.4
2,724,309	-				-2.6
2,724,328	+				-1.5
2,724,328	+				+0.3
2,724,328	+				+1.3
2,724,328	+				-1.5
2,724,329	-				-1.5
2,724,329	-				-0.5
2,724,329	-				-1.1
2,724,329	-				+0.7
2,724,353	+				-0.8
2,724,371	+				-2.4
2,724,395	+		EFB2_02577	0.12	-2.1
2,724,395	+		EFB2_02577	0.12	+0.3
2,724,395	+		EFB2_02577	0.12	-0.5
2,724,395	+		EFB2_02577	0.12	+1.0
2,724,395	+		EFB2_02577	0.12	-2.0
2,724,395	+		EFB2_02577	0.12	-1.8
2,724,395	+		EFB2_02577	0.12	-0.8
2,724,395	+		EFB2_02577	0.12	-0.1
2,724,395	+		EFB2_02577	0.12	+0.2
2,724,395	+		EFB2_02577	0.12	-0.5
2,724,395	+		EFB2_02577	0.12	-1.4
2,724,396	-		EFB2_02577	0.13	-1.5
2,724,396	-		EFB2_02577	0.13	-2.0
2,724,396	-		EFB2_02577	0.13	+1.2
2,724,396	-		EFB2_02577	0.13	-0.8
2,724,396	-		EFB2_02577	0.13	+1.5
2,724,396	-		EFB2_02577	0.13	+0.2
2,724,396	-		EFB2_02577	0.13	+0.8
2,724,396	-		EFB2_02577	0.13	-1.0
2,724,396	-		EFB2_02577	0.13	+4.8
2,724,396	-		EFB2_02577	0.13	-0.3
2,724,396	-		EFB2_02577	0.13	+2.0
2,724,396	-		EFB2_02577	0.13	+0.2
2,724,399	+		EFB2_02577	0.13	-1.2
2,724,399	+		EFB2_02577	0.13	-1.8
2,724,399	+		EFB2_02577	0.13	+1.5
2,724,399	+		EFB2_02577	0.13	-0.8
2,724,400	-		EFB2_02577	0.13	-0.7
2,724,400	-		EFB2_02577	0.13	-1.5
2,724,400	-		EFB2_02577	0.13	+1.2
2,724,416	+		EFB2_02577	0.17	-1.8
2,724,417	-		EFB2_02577	0.17	-0.5
2,724,431	+		EFB2_02577	0.21	+1.4
2,724,431	+		EFB2_02577	0.21	-0.7
2,724,431	+		EFB2_02577	0.21	+0.0
2,724,431	+		EFB2_02577	0.21	-1.1
2,724,431	+		EFB2_02577	0.21	-1.4
2,724,431	+		EFB2_02577	0.21	-2.0
2,724,431	+		EFB2_02577	0.21	+2.1
2,724,431	+		EFB2_02577	0.21	+2.3
2,724,432	-		EFB2_02577	0.21	-0.7
2,724,432	-		EFB2_02577	0.21	+2.4
2,724,432	-		EFB2_02577	0.21	-0.2
2,724,461	+		EFB2_02577	0.28	-2.1
2,724,461	+		EFB2_02577	0.28	-1.1
2,724,461	+		EFB2_02577	0.28	+1.7
2,724,469	-		EFB2_02577	0.30	-1.3
2,724,552	+		EFB2_02577	0.49	-3.3
2,724,553	-		EFB2_02577	0.50	-0.3
2,724,573	+		EFB2_02577	0.54	-1.3
2,724,612	+		EFB2_02577	0.64	-1.3
2,724,613	-		EFB2_02577	0.64	-1.4
2,724,613	-		EFB2_02577	0.64	-3.2
2,724,613	-		EFB2_02577	0.64	+0.2
2,724,636	+		EFB2_02577	0.69	+2.6
2,724,636	+		EFB2_02577	0.69	-0.4
2,724,636	+		EFB2_02577	0.69	+0.2
2,724,636	+		EFB2_02577	0.69	+0.0
2,724,636	+		EFB2_02577	0.69	+0.7
2,724,637	-		EFB2_02577	0.70	+0.0
2,724,637	-		EFB2_02577	0.70	+0.2
2,724,734	+				+1.0
2,724,734	+				+0.6
2,724,734	+				-1.0
2,724,734	+				-1.1
2,724,734	+				-0.4
2,724,735	-				+0.6
2,724,735	-				+0.1
2,724,735	-				+0.7
2,724,735	-				-2.2
2,724,735	-				-1.1
2,724,739	+				-1.3
2,724,739	+				-1.0
2,724,739	+				-1.3
2,724,739	+				-0.8
2,724,739	+				-1.5
2,724,739	+				+0.4
2,724,739	+				+1.5
2,724,739	+				-2.9
2,724,739	+				+2.2
2,724,739	+				+1.7
2,724,739	+				-0.8
2,724,739	+				+2.9
2,724,740	-				-0.7
2,724,740	-				+2.0
2,724,740	-				+0.5
2,724,740	-				+0.3
2,724,740	-				+1.7
2,724,741	+				-0.3
2,724,741	+				+0.5
2,724,742	-				-0.8
2,724,742	-				-0.3
2,724,742	-				+1.9
2,724,742	-				-2.3
2,724,742	-				-0.1
2,724,742	-				+0.1
2,724,755	+				+2.3
2,724,763	+				+0.7
2,724,764	-				-1.0
2,724,766	+				-1.3
2,724,766	+				+0.7
2,724,766	+				+0.7
2,724,767	-				-1.3
2,724,767	-				-0.6
2,724,767	-				+0.6
2,724,767	-				-1.9
2,724,803	+		EFB2_02578	0.15	-0.5
2,724,846	-		EFB2_02578	0.31	+1.7
2,724,939	+		EFB2_02578	0.66	-1.6
2,724,940	-		EFB2_02578	0.67	+0.4
2,724,940	-		EFB2_02578	0.67	+0.3
2,724,940	-		EFB2_02578	0.67	-0.8
2,724,974	+		EFB2_02578	0.79	+3.1
2,724,975	-		EFB2_02578	0.80	+0.3
2,724,975	-		EFB2_02578	0.80	+1.8
2,724,975	-		EFB2_02578	0.80	+2.1
2,724,977	+		EFB2_02578	0.81	+2.7
2,724,977	+		EFB2_02578	0.81	-0.8
2,724,977	+		EFB2_02578	0.81	-0.3
2,724,978	-		EFB2_02578	0.81	+0.2
2,724,978	-		EFB2_02578	0.81	+2.3
2,724,978	-		EFB2_02578	0.81	+0.5
2,724,993	+		EFB2_02578	0.87	-0.6
2,724,993	+		EFB2_02578	0.87	-0.7
2,724,994	-		EFB2_02578	0.87	-0.5
2,724,994	-		EFB2_02578	0.87	-0.3
2,724,994	-		EFB2_02578	0.87	-1.1
2,724,994	-		EFB2_02578	0.87	+0.9
2,725,068	+				-0.5
2,725,069	-				-0.8
2,725,069	-				-0.1
2,725,072	+				-1.5
2,725,072	+				-1.1
2,725,072	+				+0.5
2,725,072	+				+0.7
2,725,072	+				-0.3
2,725,072	+				-1.1
2,725,072	+				-1.1
2,725,073	-				+1.0
2,725,073	-				-1.3
2,725,073	-				+0.0
2,725,073	-				+0.0
2,725,073	-				+1.2
2,725,073	-				-0.3
2,725,075	+				+1.4
2,725,076	-				-1.3
2,725,137	+				+1.0
2,725,137	+				+2.0
2,725,143	+				+0.4
2,725,178	+				-2.8
2,725,178	+				-1.6
2,725,178	+				-3.2
2,725,178	+				+0.3
2,725,178	+				-0.3
2,725,179	-				-1.7
2,725,243	+				+0.6
2,725,243	+				-0.7
2,725,243	+				-0.3
2,725,244	-				+1.6
2,725,244	-				-0.1
2,725,244	-				-1.7
2,725,244	-				-1.4
2,725,246	+				-1.3
2,725,247	-				-2.6
2,725,247	-				-1.3
2,725,247	-				-1.1
2,725,290	+				-0.2
2,725,290	+				-1.5
2,725,290	+				+0.7
2,725,290	+				-2.4
2,725,290	+				+2.2
2,725,290	+				+0.5
2,725,290	+				+0.3
2,725,290	+				+1.5
2,725,290	+				+2.3
2,725,290	+				+1.1
2,725,290	+				+0.7
2,725,290	+				+3.0
2,725,290	+				+0.0
2,725,290	+				-1.3
2,725,290	+				-0.4
2,725,290	+				+1.6
2,725,290	+				+0.7
2,725,290	+				-0.9
2,725,290	+				+0.5
2,725,290	+				-0.3
2,725,291	-				+2.2
2,725,291	-				-1.0
2,725,291	-				+1.5
2,725,291	-				-2.1
2,725,291	-				+2.1
2,725,291	-				-0.0
2,725,291	-				+1.5
2,725,291	-				+1.2
2,725,291	-				+2.7
2,725,291	-				+0.1
2,725,291	-				-0.3
2,725,291	-				-0.6
2,725,291	-				-2.8
2,725,291	-				-0.5
2,725,301	+				+0.5
2,725,301	+				-0.7
2,725,301	+				-3.6
2,725,301	+				-1.0
2,725,301	+				-0.8
2,725,301	+				-0.3
2,725,301	+				-0.7
2,725,301	+				+1.8
2,725,301	+				+1.6
2,725,301	+				+1.2
2,725,301	+				-0.3
2,725,302	-				+2.6
2,725,302	-				-1.9
2,725,302	-				+1.7
2,725,302	-				+0.2
2,725,302	-				-0.7
2,725,302	-				+0.5
2,725,302	-				+2.9
2,725,302	-				+0.3
2,725,302	-				+0.4
2,725,302	-				+0.0
2,725,302	-				-2.0
2,725,302	-				+1.7
2,725,302	-				+4.7
2,725,302	-				+0.4
2,725,302	-				-1.0
2,725,302	-				-1.3
2,725,307	+				+1.1
2,725,307	+				-0.8
2,725,307	+				+1.0
2,725,307	+				-0.8
2,725,307	+				+0.9
2,725,307	+				+0.5
2,725,307	+				-0.9
2,725,307	+				+3.5
2,725,308	-				+0.4
2,725,308	-				+0.7
2,725,308	-				-3.1
2,725,308	-				-0.7
2,725,308	-				-0.8
2,725,308	-				-0.8
2,725,308	-				-0.7
2,725,308	-				+1.3
2,725,308	-				-0.5
2,725,308	-				+1.8
2,725,310	+				+1.7
2,725,310	+				-1.8
2,725,310	+				+0.7
2,725,310	+				-1.7
2,725,310	+				-1.9
2,725,311	-				+0.9
2,725,311	-				-1.4
2,725,311	-				-0.0
2,725,311	-				+1.3
2,725,311	-				+1.0
2,725,311	-				-0.1
2,725,311	-				+0.0
2,725,311	-				-1.9
2,725,371	+				-0.1
2,725,371	+				+3.9
2,725,371	+				+1.2
2,725,371	+				-0.3
2,725,371	+				+1.6
2,725,371	+				+1.1
2,725,372	-				-1.4
2,725,372	-				-0.3
2,725,372	-				-1.7
2,725,372	-				-0.3
2,725,372	-				+3.3
2,725,372	-				+1.7
2,725,372	-				-1.5
2,725,372	-				-0.7
2,725,376	+				-3.4
2,725,376	+				+2.6
2,725,376	+				-1.1
2,725,376	+				-0.2
2,725,376	+				-0.6
2,725,376	+				+0.1
2,725,377	-				-0.5
2,725,377	-				+1.1
2,725,377	-				+2.3
2,725,377	-				-0.9
2,725,377	-				+1.7
2,725,377	-				-0.9
2,725,379	+				-2.6
2,725,380	-				-1.4
2,725,491	-				+1.3
2,725,496	+				+2.0
2,725,497	-				+2.2
2,725,541	+				-1.8
2,725,542	-				+0.7
2,725,542	-				+1.3
2,725,581	+				+2.9
2,725,582	-				-0.4
2,725,631	+				-2.3
2,725,631	+				-2.0
2,725,631	+				+0.0
2,725,631	+				-0.8
2,725,632	-				+0.6
2,725,632	-				-0.3
2,725,632	-				+1.7
2,725,656	-		EFB2_02579	0.10	+1.7
2,725,656	-		EFB2_02579	0.10	+1.3
2,725,656	-		EFB2_02579	0.10	-0.5
2,725,656	-		EFB2_02579	0.10	+1.3
2,725,790	+		EFB2_02579	0.14	-0.2
2,725,790	+		EFB2_02579	0.14	-1.8
2,725,791	-		EFB2_02579	0.14	+0.1
2,725,833	-		EFB2_02579	0.15	+0.0
2,725,941	-		EFB2_02579	0.18	-1.6
2,725,962	+		EFB2_02579	0.19	+0.1
2,725,962	+		EFB2_02579	0.19	+0.6
2,725,962	+		EFB2_02579	0.19	+1.3
2,725,962	+		EFB2_02579	0.19	-2.6
2,725,962	+		EFB2_02579	0.19	-2.4
2,725,962	+		EFB2_02579	0.19	+0.0
2,725,963	-		EFB2_02579	0.19	-0.5
2,725,963	-		EFB2_02579	0.19	-0.8
2,725,963	-		EFB2_02579	0.19	+2.9
2,725,963	-		EFB2_02579	0.19	+1.1
2,725,963	-		EFB2_02579	0.19	+1.3
2,725,963	-		EFB2_02579	0.19	+0.9
2,725,995	+		EFB2_02579	0.20	+1.5
2,725,995	+		EFB2_02579	0.20	+0.4
2,725,995	+		EFB2_02579	0.20	+0.6
2,725,995	+		EFB2_02579	0.20	+0.7
2,725,995	+		EFB2_02579	0.20	+0.6
2,725,995	+		EFB2_02579	0.20	+0.9
2,725,996	-		EFB2_02579	0.20	+2.0
2,725,996	-		EFB2_02579	0.20	+0.7
2,725,996	-		EFB2_02579	0.20	+0.1
2,725,996	-		EFB2_02579	0.20	-0.8
2,725,996	-		EFB2_02579	0.20	-0.7
2,726,007	+		EFB2_02579	0.20	-0.0
2,726,007	+		EFB2_02579	0.20	+0.5
2,726,007	+		EFB2_02579	0.20	+0.5
2,726,007	+		EFB2_02579	0.20	+0.2
2,726,007	+		EFB2_02579	0.20	+1.0
2,726,007	+		EFB2_02579	0.20	-2.7
2,726,008	-		EFB2_02579	0.20	+0.7
2,726,008	-		EFB2_02579	0.20	+1.7
2,726,008	-		EFB2_02579	0.20	-3.8
2,726,008	-		EFB2_02579	0.20	+0.1
2,726,008	-		EFB2_02579	0.20	+0.9
2,726,008	-		EFB2_02579	0.20	-1.0
2,726,008	-		EFB2_02579	0.20	-0.7
2,726,008	-		EFB2_02579	0.20	+0.8