Strain Fitness in Escherichia fergusonii Becca around EFB2_01737

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
1,833,506	+		EFB2_01736	0.57	+0.2
1,833,507	-		EFB2_01736	0.57	-2.1
1,833,507	-		EFB2_01736	0.57	+0.2
1,833,522	+		EFB2_01736	0.58	-0.1
1,833,523	-		EFB2_01736	0.58	-1.8
1,833,523	-		EFB2_01736	0.58	-1.9
1,833,523	-		EFB2_01736	0.58	+1.4
1,833,546	+		EFB2_01736	0.59	+0.7
1,833,547	-		EFB2_01736	0.59	-1.7
1,833,547	-		EFB2_01736	0.59	+0.6
1,833,547	-		EFB2_01736	0.59	+1.0
1,833,552	+		EFB2_01736	0.59	-1.1
1,833,552	+		EFB2_01736	0.59	+0.6
1,833,552	+		EFB2_01736	0.59	-0.5
1,833,552	+		EFB2_01736	0.59	+0.3
1,833,552	+		EFB2_01736	0.59	+0.4
1,833,552	+		EFB2_01736	0.59	-0.2
1,833,552	+		EFB2_01736	0.59	-1.3
1,833,552	+		EFB2_01736	0.59	+0.7
1,833,552	+		EFB2_01736	0.59	-1.5
1,833,552	+		EFB2_01736	0.59	-1.5
1,833,552	+		EFB2_01736	0.59	-1.2
1,833,552	+		EFB2_01736	0.59	-0.3
1,833,552	+		EFB2_01736	0.59	-1.5
1,833,553	-		EFB2_01736	0.59	+0.2
1,833,553	-		EFB2_01736	0.59	-1.7
1,833,553	-		EFB2_01736	0.59	-2.2
1,833,553	-		EFB2_01736	0.59	-2.7
1,833,553	-		EFB2_01736	0.59	+0.4
1,833,553	-		EFB2_01736	0.59	-1.8
1,833,553	-		EFB2_01736	0.59	+0.5
1,833,553	-		EFB2_01736	0.59	+2.1
1,833,553	-		EFB2_01736	0.59	-1.3
1,833,553	-		EFB2_01736	0.59	-0.2
1,833,553	-		EFB2_01736	0.59	+1.2
1,833,557	+		EFB2_01736	0.59	-1.7
1,833,557	+		EFB2_01736	0.59	+1.8
1,833,557	+		EFB2_01736	0.59	+0.1
1,833,557	+		EFB2_01736	0.59	-1.8
1,833,558	-		EFB2_01736	0.59	-0.7
1,833,558	-		EFB2_01736	0.59	+0.6
1,833,558	-		EFB2_01736	0.59	+1.7
1,833,558	-		EFB2_01736	0.59	+1.4
1,833,558	-		EFB2_01736	0.59	-0.7
1,833,584	+		EFB2_01736	0.60	+0.9
1,833,584	+		EFB2_01736	0.60	+0.9
1,833,584	+		EFB2_01736	0.60	-0.3
1,833,584	+		EFB2_01736	0.60	-3.0
1,833,584	+		EFB2_01736	0.60	+1.2
1,833,585	-		EFB2_01736	0.61	-0.2
1,833,585	-		EFB2_01736	0.61	-1.8
1,833,585	-		EFB2_01736	0.61	-0.2
1,833,608	+		EFB2_01736	0.62	+2.3
1,833,609	-		EFB2_01736	0.62	-0.7
1,833,609	-		EFB2_01736	0.62	+0.4
1,833,617	+		EFB2_01736	0.62	+0.6
1,833,618	-		EFB2_01736	0.62	-1.2
1,833,650	+		EFB2_01736	0.63	+0.2
1,833,687	+		EFB2_01736	0.65	+0.7
1,833,687	+		EFB2_01736	0.65	-2.8
1,833,687	+		EFB2_01736	0.65	+2.4
1,833,688	-		EFB2_01736	0.65	+0.5
1,833,742	+		EFB2_01736	0.67	+0.1
1,833,743	-		EFB2_01736	0.67	+0.1
1,833,775	+		EFB2_01736	0.69	-2.1
1,833,775	+		EFB2_01736	0.69	+0.3
1,833,775	+		EFB2_01736	0.69	-1.8
1,833,775	+		EFB2_01736	0.69	+1.0
1,833,775	+		EFB2_01736	0.69	-1.3
1,833,776	-		EFB2_01736	0.69	+0.1
1,833,776	-		EFB2_01736	0.69	-0.7
1,833,776	-		EFB2_01736	0.69	-0.2
1,833,776	-		EFB2_01736	0.69	-0.1
1,833,776	-		EFB2_01736	0.69	+0.9
1,833,776	-		EFB2_01736	0.69	+1.3
1,833,787	+		EFB2_01736	0.69	+0.0
1,833,787	+		EFB2_01736	0.69	-2.5
1,833,787	+		EFB2_01736	0.69	+1.7
1,833,787	+		EFB2_01736	0.69	-0.5
1,833,787	+		EFB2_01736	0.69	-2.7
1,833,787	+		EFB2_01736	0.69	-0.2
1,833,787	+		EFB2_01736	0.69	-0.9
1,833,787	+		EFB2_01736	0.69	-2.3
1,833,787	+		EFB2_01736	0.69	+1.7
1,833,787	+		EFB2_01736	0.69	+1.9
1,833,788	-		EFB2_01736	0.69	+0.2
1,833,788	-		EFB2_01736	0.69	+0.8
1,833,788	-		EFB2_01736	0.69	+1.6
1,833,833	+		EFB2_01736	0.71	-0.3
1,833,833	+		EFB2_01736	0.71	-0.3
1,833,833	+		EFB2_01736	0.71	-0.3
1,833,833	+		EFB2_01736	0.71	+0.9
1,833,834	-		EFB2_01736	0.71	+1.0
1,833,901	-		EFB2_01736	0.74	+0.5
1,833,901	-		EFB2_01736	0.74	-2.7
1,833,935	+		EFB2_01736	0.76	+0.9
1,833,935	+		EFB2_01736	0.76	-0.9
1,833,935	+		EFB2_01736	0.76	+0.4
1,833,935	+		EFB2_01736	0.76	-1.2
1,833,935	+		EFB2_01736	0.76	+1.1
1,833,936	-		EFB2_01736	0.76	+0.0
1,833,936	-		EFB2_01736	0.76	+1.5
1,833,936	-		EFB2_01736	0.76	-2.2
1,833,936	-		EFB2_01736	0.76	+0.1
1,833,951	-		EFB2_01736	0.77	-0.4
1,834,032	+		EFB2_01736	0.80	+0.1
1,834,033	-		EFB2_01736	0.80	+2.0
1,834,062	+		EFB2_01736	0.81	-1.7
1,834,062	+		EFB2_01736	0.81	-0.7
1,834,062	+		EFB2_01736	0.81	+1.8
1,834,062	+		EFB2_01736	0.81	+0.7
1,834,063	-		EFB2_01736	0.81	+1.1
1,834,063	-		EFB2_01736	0.81	-2.5
1,834,113	+		EFB2_01736	0.84	-1.0
1,834,113	+		EFB2_01736	0.84	+0.1
1,834,113	+		EFB2_01736	0.84	-2.2
1,834,113	+		EFB2_01736	0.84	-1.6
1,834,114	-		EFB2_01736	0.84	+0.1
1,834,114	-		EFB2_01736	0.84	-2.3
1,834,114	-		EFB2_01736	0.84	+1.7
1,834,114	-		EFB2_01736	0.84	-0.2
1,834,114	-		EFB2_01736	0.84	+2.3
1,834,114	-		EFB2_01736	0.84	+0.2
1,834,136	+		EFB2_01736	0.85	+2.0
1,834,136	+		EFB2_01736	0.85	-0.5
1,834,136	+		EFB2_01736	0.85	+0.3
1,834,137	-		EFB2_01736	0.85	+0.8
1,834,137	-		EFB2_01736	0.85	-1.7
1,834,192	+		EFB2_01736	0.87	-0.1
1,834,192	+		EFB2_01736	0.87	-1.3
1,834,192	+		EFB2_01736	0.87	-1.9
1,834,192	+		EFB2_01736	0.87	+1.6
1,834,192	+		EFB2_01736	0.87	+1.0
1,834,192	+		EFB2_01736	0.87	-2.8
1,834,192	+		EFB2_01736	0.87	+0.8
1,834,193	-		EFB2_01736	0.87	+0.6
1,834,193	-		EFB2_01736	0.87	+1.1
1,834,193	-		EFB2_01736	0.87	-0.5
1,834,193	-		EFB2_01736	0.87	+1.5
1,834,193	-		EFB2_01736	0.87	+1.1
1,834,193	-		EFB2_01736	0.87	-3.3
1,834,193	-		EFB2_01736	0.87	-1.0
1,834,193	-		EFB2_01736	0.87	-0.3
1,834,193	-		EFB2_01736	0.87	-0.2
1,834,193	-		EFB2_01736	0.87	-0.1
1,834,208	+		EFB2_01736	0.88	-2.7
1,834,224	+		EFB2_01736	0.89	+0.4
1,834,224	+		EFB2_01736	0.89	-2.3
1,834,224	+		EFB2_01736	0.89	+0.0
1,834,225	-		EFB2_01736	0.89	+2.1
1,834,225	-		EFB2_01736	0.89	-4.0
1,834,225	-		EFB2_01736	0.89	-0.9
1,834,306	+				-1.6
1,834,306	+				-0.4
1,834,306	+				-2.0
1,834,306	+				+3.0
1,834,306	+				-1.3
1,834,307	-				-1.5
1,834,307	-				-2.3
1,834,307	-				-2.5
1,834,312	+				+1.4
1,834,312	+				-0.3
1,834,312	+				+2.0
1,834,312	+				+0.1
1,834,312	+				-0.1
1,834,313	-				+1.0
1,834,313	-				-0.3
1,834,313	-				-0.5
1,834,313	-				+1.1
1,834,313	-				+0.1
1,834,313	-				-2.1
1,834,316	+				-2.0
1,834,316	+				-3.3
1,834,316	+				-1.1
1,834,316	+				-3.2
1,834,316	+				+2.4
1,834,316	+				-1.2
1,834,316	+				-1.0
1,834,316	+				-1.1
1,834,316	+				+0.9
1,834,316	+				-0.6
1,834,316	+				-1.0
1,834,317	-				-0.5
1,834,317	-				+0.3
1,834,317	-				+1.0
1,834,317	-				-0.4
1,834,317	-				-0.2
1,834,317	-				+1.0
1,834,317	-				-0.2
1,834,317	-				-0.6
1,834,317	-				+0.3
1,834,317	-				-0.2
1,834,320	+				-0.3
1,834,365	-				+0.8
1,834,365	-				-2.8
1,834,365	-				-3.8
1,834,389	+				+0.1
1,834,389	+				-2.0
1,834,389	+				+0.5
1,834,389	+				+0.4
1,834,389	+				-0.1
1,834,389	+				-1.7
1,834,389	+				+1.2
1,834,389	+				+1.3
1,834,389	+				-0.8
1,834,389	+				+0.6
1,834,389	+				-3.2
1,834,390	-				-0.5
1,834,390	-				+0.1
1,834,390	-				+2.4
1,834,390	-				+2.6
1,834,390	-				+2.8
1,834,390	-				-1.1
1,834,390	-				+2.2
1,834,390	-				+0.4
1,834,390	-				-1.8
1,834,390	-				-0.5
1,834,390	-				-0.6
1,834,390	-				-0.9
1,834,390	-				-0.4
1,834,393	+				-0.1
1,834,393	+				-1.6
1,834,393	+				+1.5
1,834,393	+				-1.1
1,834,393	+				+1.1
1,834,394	-				-0.3
1,834,394	-				+0.8
1,834,394	-				-2.3
1,834,394	-				-0.7
1,834,417	-				+1.2
1,834,448	+				-1.9
1,834,448	+				+1.9
1,834,448	+				+1.6
1,834,448	+				+0.2
1,834,448	+				+0.6
1,834,448	+				+1.3
1,834,448	+				-2.7
1,834,448	+				+1.0
1,834,449	-				-0.6
1,834,449	-				-0.5
1,834,449	-				-2.4
1,834,449	-				+1.0
1,834,449	-				+0.6
1,834,449	-				-0.9
1,834,449	-				+1.4
1,834,449	-				+0.9
1,834,449	-				+0.7
1,834,449	-				-0.3
1,834,449	-				-0.8
1,834,449	-				+0.9
1,834,449	-				-1.3
1,834,449	-				-2.3
1,834,449	-				-0.7
1,834,449	-				-3.1
1,834,484	+				-1.3
1,834,484	+				-1.5
1,834,484	+				+0.9
1,834,484	+				+0.9
1,834,484	+				-1.1
1,834,484	+				+0.7
1,834,484	+				+1.2
1,834,485	-				-0.5
1,834,485	-				-1.6
1,834,485	-				-1.0
1,834,485	-				-0.9
1,834,485	-				-1.3
1,834,485	-				+0.6
1,834,485	-				+3.4
1,834,485	-				+2.1
1,834,485	-				-0.6
1,834,520	+				+1.0
1,834,520	+				+1.9
1,834,521	-				+0.9
1,834,521	-				-0.5
1,834,521	-				+1.7
1,834,521	-				+2.5
1,834,521	-				-0.1
1,834,521	-				-0.8
1,834,521	-				+1.4
1,834,523	+				+1.3
1,834,523	+				-0.4
1,834,523	+				+0.8
1,834,523	+				+0.9
1,834,523	+				+1.1
1,834,523	+				+0.1
1,834,523	+				-1.2
1,834,523	+				+0.2
1,834,524	-				-2.2
1,834,524	-				+1.1
1,834,524	-				+2.4
1,834,524	-				-0.6
1,834,524	-				-0.3
1,834,524	-				+1.3
1,834,524	-				-1.1
1,834,524	-				+0.9
1,834,524	-				+0.7
1,834,524	-				-0.1
1,834,524	-				-1.8
1,834,524	-				+1.3
1,834,545	+				-1.1
1,834,545	+				+0.8
1,834,545	+				-2.0
1,834,545	+				-0.1
1,834,545	+				+0.2
1,834,545	+				+0.1
1,834,545	+				-0.5
1,834,545	+				-0.2
1,834,545	+				+0.3
1,834,545	+				+0.3
1,834,545	+				-0.1
1,834,545	+				-0.5
1,834,545	+				-0.4
1,834,545	+				-3.2
1,834,545	+				+2.1
1,834,545	+				-0.7
1,834,546	-				-0.0
1,834,546	-				+1.6
1,834,546	-				+0.9
1,834,546	-				-0.6
1,834,546	-				+1.6
1,834,546	-				+0.6
1,834,546	-				-0.1
1,834,546	-				+0.2
1,834,546	-				+1.2
1,834,546	-				+1.1
1,834,546	-				+0.4
1,834,546	-				-0.4
1,834,551	+				-0.3
1,834,551	+				+0.3
1,834,551	+				-0.4
1,834,551	+				-0.5
1,834,551	+				+2.1
1,834,552	-				-0.9
1,834,552	-				+0.0
1,834,552	-				+0.2
1,834,552	-				+0.4
1,834,552	-				-0.2
1,834,552	-				-0.1
1,834,572	-				-1.7
1,834,572	-				+0.1
1,834,603	-				-0.5
1,834,626	+		EFB2_01737	0.12	+0.3
1,834,626	+		EFB2_01737	0.12	+0.7
1,834,626	+		EFB2_01737	0.12	-0.2
1,834,626	+		EFB2_01737	0.12	-2.5
1,834,626	+		EFB2_01737	0.12	+1.1
1,834,626	+		EFB2_01737	0.12	-1.0
1,834,626	+		EFB2_01737	0.12	+0.6
1,834,626	+		EFB2_01737	0.12	-3.5
1,834,627	-		EFB2_01737	0.12	+1.5
1,834,627	-		EFB2_01737	0.12	-0.3
1,834,627	-		EFB2_01737	0.12	+1.8
1,834,627	-		EFB2_01737	0.12	+0.0
1,834,627	-		EFB2_01737	0.12	-0.1
1,834,627	-		EFB2_01737	0.12	+1.0
1,834,627	-		EFB2_01737	0.12	-2.2
1,834,627	-		EFB2_01737	0.12	-0.4
1,834,627	-		EFB2_01737	0.12	+1.7
1,834,627	-		EFB2_01737	0.12	-1.6
1,834,725	+		EFB2_01737	0.21	-1.1
1,834,725	+		EFB2_01737	0.21	+0.8
1,834,725	+		EFB2_01737	0.21	+1.4
1,834,725	+		EFB2_01737	0.21	-2.1
1,834,725	+		EFB2_01737	0.21	-1.2
1,834,725	+		EFB2_01737	0.21	+1.0
1,834,725	+		EFB2_01737	0.21	+0.2
1,834,726	-		EFB2_01737	0.21	-0.6
1,834,726	-		EFB2_01737	0.21	-2.6
1,834,726	-		EFB2_01737	0.21	+0.6
1,834,726	-		EFB2_01737	0.21	-0.9
1,834,726	-		EFB2_01737	0.21	+0.7
1,834,726	-		EFB2_01737	0.21	-0.7
1,834,726	-		EFB2_01737	0.21	-1.5
1,834,726	-		EFB2_01737	0.21	-0.5
1,834,740	+		EFB2_01737	0.22	-2.2
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1,836,578	+		EFB2_01739	0.45	-2.1
1,836,578	+		EFB2_01739	0.45	+1.2
1,836,578	+		EFB2_01739	0.45	+0.3
1,836,578	+		EFB2_01739	0.45	+0.7