Strain Fitness in Escherichia fergusonii Becca around EFB2_01674

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
1,760,607	+				-0.7
1,760,608	-				-2.2
1,760,608	-				-0.1
1,760,632	+				+0.4
1,760,633	-				-2.5
1,760,646	+				+2.2
1,760,646	+				-0.2
1,760,646	+				+2.4
1,760,646	+				+1.1
1,760,647	-				+1.1
1,760,647	-				-0.3
1,760,647	-				+0.3
1,760,647	-				+2.1
1,760,706	+				-1.2
1,760,706	+				+0.3
1,760,707	-				-2.0
1,760,726	-				+0.6
1,760,726	-				+0.5
1,760,729	+				-0.7
1,760,729	+				-1.2
1,760,729	+				-1.6
1,760,729	+				-0.3
1,760,730	-				+0.1
1,760,730	-				-1.2
1,760,730	-				-2.0
1,760,730	-				-1.5
1,760,730	-				+2.3
1,760,730	-				-0.0
1,760,734	+				-0.0
1,760,734	+				-1.2
1,760,734	+				-3.3
1,760,735	-				+0.4
1,760,735	-				+0.8
1,760,742	+				+0.8
1,760,742	+				+1.1
1,760,742	+				+0.9
1,760,742	+				-0.5
1,760,742	+				+1.7
1,760,742	+				-1.1
1,760,743	-				+1.6
1,760,743	-				-1.8
1,760,743	-				-1.3
1,760,743	-				+0.2
1,760,743	-				-1.1
1,760,743	-				+1.0
1,760,743	-				-1.9
1,760,745	+				+1.1
1,760,745	+				-1.1
1,760,745	+				+2.4
1,760,745	+				+0.6
1,760,745	+				-2.7
1,760,745	+				-2.4
1,760,745	+				-3.1
1,760,745	+				-0.1
1,760,745	+				+1.7
1,760,745	+				+1.7
1,760,745	+				-1.5
1,760,745	+				+1.1
1,760,745	+				+3.6
1,760,745	+				-1.5
1,760,745	+				-0.7
1,760,745	+				-0.4
1,760,745	+				-0.5
1,760,745	+				-0.0
1,760,746	-				-0.2
1,760,746	-				+1.8
1,760,746	-				-1.9
1,760,746	-				-0.1
1,760,746	-				-0.1
1,760,746	-				+0.3
1,760,746	-				+0.8
1,760,746	-				-1.1
1,760,746	-				+0.3
1,760,746	-				-2.0
1,760,746	-				-1.7
1,760,746	-				-2.9
1,760,746	-				-0.2
1,760,746	-				+0.3
1,760,746	-				+0.5
1,760,746	-				-0.2
1,760,746	-				+1.1
1,760,746	-				+0.5
1,760,746	-				+0.7
1,760,746	-				+1.4
1,760,748	+				+1.4
1,760,748	+				+0.0
1,760,748	+				-2.5
1,760,748	+				+1.1
1,760,749	-				-1.5
1,760,749	-				-0.1
1,760,749	-				-1.9
1,760,780	+				+0.6
1,760,780	+				+1.4
1,760,780	+				+0.6
1,760,780	+				-0.1
1,760,780	+				-2.1
1,760,780	+				+1.2
1,760,780	+				+0.1
1,760,781	-				+3.5
1,760,781	-				+1.1
1,760,781	-				+0.1
1,760,783	+				-0.2
1,760,783	+				-0.1
1,760,783	+				-1.1
1,760,784	-				-1.3
1,760,784	-				+1.0
1,760,784	-				-0.7
1,760,784	-				+0.3
1,760,791	+				-0.8
1,760,791	+				+0.3
1,760,791	+				-2.6
1,760,791	+				+1.2
1,760,791	+				+0.1
1,760,791	+				+0.9
1,760,791	+				+1.0
1,760,792	-				+1.9
1,760,792	-				-0.9
1,760,792	-				+0.2
1,760,792	-				+2.3
1,760,793	+				-1.3
1,760,794	-				+0.0
1,760,794	-				+0.5
1,760,794	-				+1.3
1,760,846	+				+2.2
1,760,877	-				+3.6
1,760,883	-				+1.7
1,760,912	+				+0.9
1,760,913	-				+1.1
1,760,913	-				-0.3
1,761,010	-		EFB2_01673	0.21	-0.1
1,761,048	+		EFB2_01673	0.26	-3.0
1,761,048	+		EFB2_01673	0.26	-0.9
1,761,048	+		EFB2_01673	0.26	-3.5
1,761,048	+		EFB2_01673	0.26	-2.7
1,761,048	+		EFB2_01673	0.26	+1.3
1,761,049	-		EFB2_01673	0.26	+1.6
1,761,049	-		EFB2_01673	0.26	+0.6
1,761,049	-		EFB2_01673	0.26	+1.8
1,761,049	-		EFB2_01673	0.26	-1.9
1,761,049	-		EFB2_01673	0.26	+0.5
1,761,062	+		EFB2_01673	0.28	-0.2
1,761,062	+		EFB2_01673	0.28	-0.8
1,761,062	+		EFB2_01673	0.28	-0.5
1,761,063	-		EFB2_01673	0.28	+2.1
1,761,063	-		EFB2_01673	0.28	-1.3
1,761,075	+		EFB2_01673	0.30	+1.2
1,761,075	+		EFB2_01673	0.30	-1.2
1,761,076	-		EFB2_01673	0.30	-1.5
1,761,076	-		EFB2_01673	0.30	-2.8
1,761,076	-		EFB2_01673	0.30	+0.5
1,761,076	-		EFB2_01673	0.30	-0.9
1,761,076	-		EFB2_01673	0.30	+0.3
1,761,076	-		EFB2_01673	0.30	-1.8
1,761,117	+		EFB2_01673	0.36	+1.9
1,761,117	+		EFB2_01673	0.36	-0.0
1,761,177	-		EFB2_01673	0.45	+2.0
1,761,177	-		EFB2_01673	0.45	+2.4
1,761,190	+		EFB2_01673	0.47	-2.9
1,761,190	+		EFB2_01673	0.47	-1.3
1,761,191	-		EFB2_01673	0.47	+0.6
1,761,191	-		EFB2_01673	0.47	+2.1
1,761,191	-		EFB2_01673	0.47	-2.3
1,761,193	+		EFB2_01673	0.47	-3.0
1,761,193	+		EFB2_01673	0.47	-1.1
1,761,193	+		EFB2_01673	0.47	+0.1
1,761,194	-		EFB2_01673	0.47	+1.2
1,761,227	+		EFB2_01673	0.52	+1.4
1,761,227	+		EFB2_01673	0.52	+1.1
1,761,227	+		EFB2_01673	0.52	-0.7
1,761,227	+		EFB2_01673	0.52	-0.9
1,761,227	+		EFB2_01673	0.52	-0.1
1,761,228	-		EFB2_01673	0.52	+0.2
1,761,228	-		EFB2_01673	0.52	+0.8
1,761,228	-		EFB2_01673	0.52	-0.3
1,761,228	-		EFB2_01673	0.52	-0.0
1,761,228	-		EFB2_01673	0.52	-0.1
1,761,228	-		EFB2_01673	0.52	+0.3
1,761,228	-		EFB2_01673	0.52	+0.0
1,761,228	-		EFB2_01673	0.52	+0.2
1,761,258	+		EFB2_01673	0.56	-0.7
1,761,258	+		EFB2_01673	0.56	+0.8
1,761,258	+		EFB2_01673	0.56	-2.8
1,761,258	+		EFB2_01673	0.56	-0.9
1,761,258	+		EFB2_01673	0.56	-0.1
1,761,259	-		EFB2_01673	0.57	+0.2
1,761,259	-		EFB2_01673	0.57	-1.3
1,761,259	-		EFB2_01673	0.57	-1.8
1,761,259	-		EFB2_01673	0.57	+0.8
1,761,259	-		EFB2_01673	0.57	+0.3
1,761,259	-		EFB2_01673	0.57	+1.3
1,761,259	-		EFB2_01673	0.57	-1.6
1,761,259	-		EFB2_01673	0.57	+0.2
1,761,259	-		EFB2_01673	0.57	+2.9
1,761,283	+		EFB2_01673	0.60	+0.1
1,761,283	+		EFB2_01673	0.60	+0.8
1,761,284	-		EFB2_01673	0.60	+1.5
1,761,311	+		EFB2_01673	0.64	-1.5
1,761,312	-		EFB2_01673	0.64	-0.0
1,761,347	+		EFB2_01673	0.69	-0.2
1,761,347	+		EFB2_01673	0.69	-0.1
1,761,348	-		EFB2_01673	0.69	-1.3
1,761,476	+		EFB2_01673	0.88	+0.9
1,761,476	+		EFB2_01673	0.88	-1.5
1,761,476	+		EFB2_01673	0.88	+1.0
1,761,476	+		EFB2_01673	0.88	-0.4
1,761,476	+		EFB2_01673	0.88	-1.8
1,761,476	+		EFB2_01673	0.88	+0.0
1,761,477	-		EFB2_01673	0.88	+1.3
1,761,477	-		EFB2_01673	0.88	-0.7
1,761,477	-		EFB2_01673	0.88	+0.9
1,761,477	-		EFB2_01673	0.88	+0.2
1,761,488	+		EFB2_01673	0.90	-2.9
1,761,488	+		EFB2_01673	0.90	-0.3
1,761,488	+		EFB2_01673	0.90	-1.4
1,761,488	+		EFB2_01673	0.90	-0.8
1,761,489	-		EFB2_01673	0.90	+1.5
1,761,489	-		EFB2_01673	0.90	+1.9
1,761,489	-		EFB2_01673	0.90	-0.7
1,761,489	-		EFB2_01673	0.90	+2.1
1,761,489	-		EFB2_01673	0.90	-0.9
1,761,505	+				-2.6
1,761,505	+				-1.6
1,761,505	+				+0.4
1,761,520	-				-3.6
1,761,520	-				+0.3
1,761,618	-				+0.0
1,761,626	+				-2.4
1,761,626	+				+0.9
1,761,627	-				-1.1
1,761,627	-				+0.8
1,761,668	+				-0.2
1,761,668	+				+0.6
1,761,668	+				+0.2
1,761,668	+				+0.7
1,761,668	+				-0.9
1,761,668	+				+1.5
1,761,668	+				+0.5
1,761,668	+				-0.0
1,761,668	+				-1.9
1,761,668	+				-0.1
1,761,668	+				+1.2
1,761,668	+				+0.5
1,761,668	+				+1.6
1,761,668	+				-0.9
1,761,668	+				+0.2
1,761,668	+				-1.2
1,761,668	+				+0.8
1,761,668	+				+0.7
1,761,669	-				+1.5
1,761,669	-				-0.0
1,761,669	-				+0.5
1,761,669	-				+2.1
1,761,669	-				-0.1
1,761,669	-				-0.2
1,761,669	-				-1.2
1,761,669	-				-0.5
1,761,669	-				+2.0
1,761,669	-				-0.2
1,761,669	-				+0.7
1,761,669	-				+1.8
1,761,669	-				+0.1
1,761,669	-				-1.7
1,761,672	+				-0.8
1,761,672	+				-0.5
1,761,672	+				+1.0
1,761,672	+				-1.8
1,761,672	+				-0.5
1,761,672	+				-0.5
1,761,672	+				-0.7
1,761,672	+				+0.3
1,761,672	+				+0.1
1,761,672	+				+0.1
1,761,672	+				+1.2
1,761,672	+				+0.4
1,761,672	+				-0.2
1,761,672	+				-1.4
1,761,672	+				+0.9
1,761,672	+				+0.8
1,761,672	+				-0.4
1,761,672	+				+0.1
1,761,672	+				+0.9
1,761,672	+				+0.4
1,761,672	+				+1.3
1,761,672	+				+1.1
1,761,672	+				+0.2
1,761,672	+				+0.2
1,761,672	+				-2.6
1,761,672	+				-0.4
1,761,672	+				-1.0
1,761,672	+				-3.4
1,761,672	+				-2.3
1,761,672	+				-2.1
1,761,672	+				-0.2
1,761,672	+				-1.0
1,761,672	+				+1.5
1,761,672	+				-0.6
1,761,672	+				-0.9
1,761,672	+				+0.5
1,761,672	+				+0.0
1,761,672	+				+0.8
1,761,672	+				+0.8
1,761,672	+				-0.9
1,761,672	+				+0.5
1,761,672	+				+0.3
1,761,672	+				+0.9
1,761,672	+				-0.9
1,761,672	+				+2.1
1,761,672	+				+0.9
1,761,672	+				-0.5
1,761,672	+				-0.1
1,761,672	+				-0.0
1,761,673	-				-0.5
1,761,673	-				+0.4
1,761,673	-				+0.8
1,761,673	-				+2.1
1,761,673	-				+1.3
1,761,673	-				+0.5
1,761,673	-				-2.4
1,761,673	-				+0.5
1,761,673	-				-2.6
1,761,673	-				-2.1
1,761,673	-				-0.4
1,761,673	-				+0.3
1,761,673	-				-0.2
1,761,673	-				+0.9
1,761,673	-				-0.5
1,761,673	-				+0.2
1,761,673	-				-0.9
1,761,673	-				-1.9
1,761,673	-				+2.4
1,761,673	-				+1.0
1,761,673	-				-0.0
1,761,673	-				-0.9
1,761,673	-				+1.3
1,761,673	-				+0.1
1,761,673	-				+0.2
1,761,673	-				+0.2
1,761,673	-				+1.1
1,761,673	-				+1.1
1,761,673	-				-2.9
1,761,673	-				+1.7
1,761,673	-				+1.8
1,761,673	-				+0.8
1,761,673	-				-0.5
1,761,673	-				-1.9
1,761,673	-				+0.5
1,761,673	-				+1.3
1,761,673	-				+2.1
1,761,673	-				+0.6
1,761,673	-				+0.8
1,761,673	-				-1.8
1,761,673	-				-0.2
1,761,673	-				+1.1
1,761,673	-				+1.8
1,761,673	-				-1.5
1,761,673	-				-0.2
1,761,673	-				-0.5
1,761,725	+		EFB2_01674	0.12	-1.2
1,761,725	+		EFB2_01674	0.12	-2.1
1,761,725	+		EFB2_01674	0.12	+1.1
1,761,726	-		EFB2_01674	0.12	-0.2
1,761,726	-		EFB2_01674	0.12	+1.0
1,761,726	-		EFB2_01674	0.12	+0.7
1,761,743	+		EFB2_01674	0.13	+0.1
1,761,743	+		EFB2_01674	0.13	+1.9
1,761,743	+		EFB2_01674	0.13	+0.8
1,761,743	+		EFB2_01674	0.13	+0.6
1,761,743	+		EFB2_01674	0.13	-1.4
1,761,743	+		EFB2_01674	0.13	+0.6
1,761,743	+		EFB2_01674	0.13	-2.1
1,761,743	+		EFB2_01674	0.13	-2.8
1,761,744	-		EFB2_01674	0.13	+1.2
1,761,744	-		EFB2_01674	0.13	-0.1
1,761,744	-		EFB2_01674	0.13	-1.3
1,761,744	-		EFB2_01674	0.13	+1.0
1,761,744	-		EFB2_01674	0.13	-2.6
1,761,744	-		EFB2_01674	0.13	+1.5
1,761,744	-		EFB2_01674	0.13	+1.0
1,761,744	-		EFB2_01674	0.13	+1.9
1,761,744	-		EFB2_01674	0.13	-0.8
1,761,744	-		EFB2_01674	0.13	-2.5
1,761,747	+		EFB2_01674	0.13	+0.8
1,761,747	+		EFB2_01674	0.13	+0.6
1,761,747	+		EFB2_01674	0.13	-0.8
1,761,747	+		EFB2_01674	0.13	-0.5
1,761,747	+		EFB2_01674	0.13	-2.8
1,761,747	+		EFB2_01674	0.13	-2.0
1,761,747	+		EFB2_01674	0.13	+1.7
1,761,747	+		EFB2_01674	0.13	-0.9
1,761,747	+		EFB2_01674	0.13	+1.3
1,761,747	+		EFB2_01674	0.13	+0.1
1,761,747	+		EFB2_01674	0.13	+1.9
1,761,747	+		EFB2_01674	0.13	-0.4
1,761,747	+		EFB2_01674	0.13	-2.8
1,761,747	+		EFB2_01674	0.13	-1.7
1,761,747	+		EFB2_01674	0.13	-0.0
1,761,747	+		EFB2_01674	0.13	-2.3
1,761,747	+		EFB2_01674	0.13	-0.7
1,761,747	+		EFB2_01674	0.13	+0.2
1,761,748	-		EFB2_01674	0.13	+0.4
1,761,748	-		EFB2_01674	0.13	+0.7
1,761,748	-		EFB2_01674	0.13	+1.9
1,761,748	-		EFB2_01674	0.13	+1.5
1,761,748	-		EFB2_01674	0.13	+0.2
1,761,748	-		EFB2_01674	0.13	-2.9
1,761,748	-		EFB2_01674	0.13	+1.0
1,761,748	-		EFB2_01674	0.13	+0.9
1,761,748	-		EFB2_01674	0.13	+2.3
1,761,748	-		EFB2_01674	0.13	-0.3
1,761,748	-		EFB2_01674	0.13	+0.3
1,761,748	-		EFB2_01674	0.13	-0.4
1,761,748	-		EFB2_01674	0.13	-1.6
1,761,748	-		EFB2_01674	0.13	+1.1
1,761,749	+		EFB2_01674	0.14	+0.8
1,761,749	+		EFB2_01674	0.14	-0.7
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1,763,286	+		EFB2_01675	0.50	-0.1
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1,763,286	+		EFB2_01675	0.50	+0.8
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1,763,293	+		EFB2_01675	0.52	-0.2
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1,763,294	-		EFB2_01675	0.53	+1.4
1,763,305	+		EFB2_01675	0.56	+0.4
1,763,364	+		EFB2_01675	0.73	+0.3
1,763,365	+		EFB2_01675	0.73	-2.5
1,763,365	+		EFB2_01675	0.73	+0.9
1,763,442	+				-1.7
1,763,442	+				+0.4
1,763,442	+				-0.5
1,763,442	+				-1.9
1,763,442	+				+0.5
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1,763,443	-				+1.2
1,763,443	-				+2.0
1,763,443	-				+1.5
1,763,443	-				-3.2
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1,763,475	+				-1.2
1,763,475	+				-0.2
1,763,475	+				-1.5
1,763,475	+				-1.9
1,763,475	+				-2.1
1,763,486	+				-1.9
1,763,486	+				+3.5
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1,763,486	+				+1.6
1,763,486	+				-0.7
1,763,486	+				+0.2
1,763,486	+				-2.0
1,763,486	+				+0.5
1,763,486	+				+1.7
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1,763,486	+				+1.9
1,763,486	+				-0.2
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1,763,658	+		EFB2_01676	0.12	-2.1
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1,763,750	+		EFB2_01676	0.18	-2.9
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