Strain Fitness in Escherichia fergusonii Becca around EFB2_01487

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
1,551,620	+		EFB2_01486	0.21	-2.8
1,551,620	+		EFB2_01486	0.21	+0.6
1,551,621	-		EFB2_01486	0.21	+0.8
1,551,621	-		EFB2_01486	0.21	-1.5
1,551,621	-		EFB2_01486	0.21	-1.7
1,551,650	+		EFB2_01486	0.24	+0.1
1,551,650	+		EFB2_01486	0.24	+0.4
1,551,650	+		EFB2_01486	0.24	+0.9
1,551,650	+		EFB2_01486	0.24	+2.0
1,551,650	+		EFB2_01486	0.24	+0.1
1,551,650	+		EFB2_01486	0.24	-0.3
1,551,651	-		EFB2_01486	0.24	+0.5
1,551,651	-		EFB2_01486	0.24	-0.2
1,551,651	-		EFB2_01486	0.24	-2.1
1,551,651	-		EFB2_01486	0.24	+0.1
1,551,651	-		EFB2_01486	0.24	-0.2
1,551,651	-		EFB2_01486	0.24	+0.3
1,551,651	-		EFB2_01486	0.24	+1.3
1,551,651	-		EFB2_01486	0.24	+0.8
1,551,651	-		EFB2_01486	0.24	+0.1
1,551,695	+		EFB2_01486	0.28	+0.4
1,551,710	+		EFB2_01486	0.30	+0.3
1,551,711	-		EFB2_01486	0.30	+0.2
1,551,711	-		EFB2_01486	0.30	+0.1
1,551,722	+		EFB2_01486	0.31	+0.0
1,551,723	-		EFB2_01486	0.31	+0.3
1,551,730	+		EFB2_01486	0.32	+1.4
1,551,730	+		EFB2_01486	0.32	+0.5
1,551,731	-		EFB2_01486	0.32	+3.1
1,551,731	-		EFB2_01486	0.32	-0.3
1,551,793	+		EFB2_01486	0.39	+0.1
1,551,800	+		EFB2_01486	0.39	+1.7
1,551,800	+		EFB2_01486	0.39	+1.0
1,551,800	+		EFB2_01486	0.39	+1.1
1,551,800	+		EFB2_01486	0.39	-0.5
1,551,800	+		EFB2_01486	0.39	+0.3
1,551,800	+		EFB2_01486	0.39	-0.0
1,551,800	+		EFB2_01486	0.39	+0.9
1,551,800	+		EFB2_01486	0.39	-1.3
1,551,800	+		EFB2_01486	0.39	+0.1
1,551,801	-		EFB2_01486	0.39	-0.4
1,551,801	-		EFB2_01486	0.39	-1.5
1,551,801	-		EFB2_01486	0.39	+1.6
1,551,801	-		EFB2_01486	0.39	+1.1
1,551,801	-		EFB2_01486	0.39	-0.7
1,551,801	-		EFB2_01486	0.39	-1.3
1,551,806	+		EFB2_01486	0.40	-2.3
1,551,806	+		EFB2_01486	0.40	-0.8
1,551,806	+		EFB2_01486	0.40	-0.1
1,551,806	+		EFB2_01486	0.40	-0.8
1,551,807	-		EFB2_01486	0.40	+0.9
1,551,807	-		EFB2_01486	0.40	-1.7
1,551,807	-		EFB2_01486	0.40	-2.2
1,551,807	-		EFB2_01486	0.40	-1.7
1,551,816	+		EFB2_01486	0.41	-2.5
1,551,864	-		EFB2_01486	0.46	-1.8
1,551,874	+		EFB2_01486	0.47	+0.6
1,551,875	-		EFB2_01486	0.47	-0.3
1,551,875	-		EFB2_01486	0.47	-1.1
1,551,875	-		EFB2_01486	0.47	-0.2
1,551,917	+		EFB2_01486	0.51	+0.1
1,551,918	-		EFB2_01486	0.52	-0.6
1,551,936	-		EFB2_01486	0.53	-2.5
1,551,936	-		EFB2_01486	0.53	+1.7
1,551,946	+		EFB2_01486	0.54	+1.4
1,551,946	+		EFB2_01486	0.54	+0.4
1,551,947	-		EFB2_01486	0.55	-1.7
1,552,014	+		EFB2_01486	0.61	-0.7
1,552,015	-		EFB2_01486	0.62	-0.1
1,552,015	-		EFB2_01486	0.62	+0.1
1,552,070	+		EFB2_01486	0.67	-1.1
1,552,070	+		EFB2_01486	0.67	-0.7
1,552,071	-		EFB2_01486	0.67	+1.7
1,552,071	-		EFB2_01486	0.67	-0.1
1,552,073	+		EFB2_01486	0.68	-1.4
1,552,074	-		EFB2_01486	0.68	-0.1
1,552,196	+		EFB2_01486	0.80	-0.5
1,552,269	-		EFB2_01486	0.88	-0.9
1,552,287	+		EFB2_01486	0.90	+0.3
1,552,287	+		EFB2_01486	0.90	+0.2
1,552,287	+		EFB2_01486	0.90	-0.4
1,552,287	+		EFB2_01486	0.90	+1.4
1,552,287	+		EFB2_01486	0.90	-0.8
1,552,287	+		EFB2_01486	0.90	-0.0
1,552,287	+		EFB2_01486	0.90	-1.6
1,552,288	-		EFB2_01486	0.90	-0.3
1,552,288	-		EFB2_01486	0.90	+0.5
1,552,288	-		EFB2_01486	0.90	-2.7
1,552,288	-		EFB2_01486	0.90	+2.1
1,552,288	-		EFB2_01486	0.90	+0.1
1,552,288	-		EFB2_01486	0.90	+3.4
1,552,288	-		EFB2_01486	0.90	-1.5
1,552,288	-		EFB2_01486	0.90	+0.8
1,552,298	+				+0.1
1,552,298	+				-1.5
1,552,298	+				+1.5
1,552,299	-				-0.2
1,552,299	-				+0.8
1,552,308	+				-0.0
1,552,308	+				-0.1
1,552,308	+				+2.7
1,552,308	+				-2.3
1,552,309	-				+1.3
1,552,309	-				+0.4
1,552,309	-				-0.1
1,552,357	+				+1.0
1,552,357	+				-0.6
1,552,358	-				-0.9
1,552,370	-				+1.4
1,552,370	-				+1.3
1,552,398	-				+0.7
1,552,398	-				+0.3
1,552,399	+				-0.1
1,552,399	+				-0.5
1,552,399	+				-0.2
1,552,399	+				+2.1
1,552,400	-				-1.0
1,552,443	-				+1.0
1,552,496	+				+0.2
1,552,507	+				-2.7
1,552,507	+				-1.2
1,552,508	-				-2.7
1,552,508	-				+0.5
1,552,518	+				-2.6
1,552,519	-				+0.9
1,552,519	-				+0.2
1,552,527	+				-0.4
1,552,527	+				-0.4
1,552,527	+				+0.3
1,552,527	+				-1.7
1,552,528	-				+1.4
1,552,528	-				-1.2
1,552,528	-				-0.3
1,552,528	-				+2.1
1,552,528	-				+0.4
1,552,528	-				+0.5
1,552,528	-				-1.2
1,552,528	-				-0.0
1,552,564	+				-1.9
1,552,581	+				-2.3
1,552,581	+				-0.5
1,552,581	+				+0.6
1,552,582	-				-2.3
1,552,582	-				+0.4
1,552,599	+				+0.5
1,552,599	+				-0.7
1,552,599	+				-1.5
1,552,599	+				+0.0
1,552,600	-				+0.0
1,552,600	-				-1.3
1,552,609	+				-0.1
1,552,609	+				+0.1
1,552,609	+				-0.6
1,552,609	+				+0.1
1,552,610	-				+1.1
1,552,610	-				-1.3
1,552,626	+				+0.7
1,552,626	+				-0.4
1,552,626	+				+1.4
1,552,626	+				-0.7
1,552,626	+				+0.4
1,552,626	+				+0.0
1,552,626	+				+0.1
1,552,626	+				-1.6
1,552,626	+				+1.1
1,552,626	+				-0.3
1,552,626	+				-0.8
1,552,626	+				+0.7
1,552,626	+				-0.1
1,552,626	+				-2.1
1,552,626	+				+1.3
1,552,626	+				+1.6
1,552,626	+				-0.2
1,552,626	+				+2.1
1,552,626	+				+0.2
1,552,626	+				-0.6
1,552,626	+				-0.5
1,552,626	+				+0.3
1,552,626	+				-3.3
1,552,626	+				-2.8
1,552,626	+				+2.0
1,552,626	+				-1.4
1,552,626	+				+0.5
1,552,626	+				-1.0
1,552,626	+				-1.3
1,552,626	+				-1.9
1,552,627	-				+0.7
1,552,627	-				-2.0
1,552,627	-				-1.3
1,552,627	-				+1.3
1,552,627	-				+2.3
1,552,627	-				-0.0
1,552,627	-				+3.0
1,552,627	-				-0.5
1,552,627	-				-3.2
1,552,627	-				+0.5
1,552,627	-				+0.5
1,552,627	-				-0.3
1,552,627	-				-0.5
1,552,627	-				-0.9
1,552,627	-				+0.4
1,552,627	-				+1.9
1,552,627	-				+0.5
1,552,627	-				-2.8
1,552,627	-				+0.9
1,552,660	+		EFB2_01487	0.17	+1.5
1,552,660	+		EFB2_01487	0.17	-2.9
1,552,661	-		EFB2_01487	0.17	+0.8
1,552,661	-		EFB2_01487	0.17	-3.8
1,552,661	-		EFB2_01487	0.17	+0.1
1,552,692	+		EFB2_01487	0.27	-0.1
1,552,804	+		EFB2_01487	0.61	+0.1
1,552,805	-		EFB2_01487	0.61	+0.5
1,552,816	+		EFB2_01487	0.65	-1.8
1,552,817	-		EFB2_01487	0.65	-0.4
1,552,817	-		EFB2_01487	0.65	-0.5
1,552,817	-		EFB2_01487	0.65	+1.1
1,552,870	+		EFB2_01487	0.81	-1.7
1,552,871	-		EFB2_01487	0.82	-1.7
1,552,928	+				+1.0
1,552,928	+				+0.9
1,552,928	+				-0.0
1,552,928	+				+1.1
1,552,928	+				-1.0
1,552,928	+				+0.2
1,552,928	+				+0.5
1,552,929	-				+1.9
1,552,929	-				+2.4
1,552,929	-				+0.9
1,552,929	-				-2.1
1,552,929	-				-1.6
1,552,929	-				-0.5
1,552,929	-				+0.6
1,552,929	-				+0.1
1,552,929	-				+1.3
1,552,931	+				-1.5
1,552,931	+				-1.3
1,552,932	-				+1.5
1,552,932	-				+1.4
1,552,932	-				-0.8
1,552,932	-				-0.5
1,552,932	-				+0.2
1,552,932	-				+0.7
1,552,944	+				+1.0
1,552,944	+				+0.4
1,552,944	+				+0.5
1,552,944	+				-0.2
1,552,944	+				-1.0
1,552,944	+				-0.1
1,552,944	+				+0.3
1,552,944	+				-3.6
1,552,944	+				+0.7
1,552,944	+				+0.5
1,552,944	+				+3.7
1,552,945	-				+0.1
1,552,945	-				+0.6
1,552,951	+				+1.4
1,552,952	-				+0.5
1,552,961	-				+3.3
1,553,014	+				-3.2
1,553,014	+				-0.7
1,553,015	-				-1.3
1,553,015	-				+0.5
1,553,032	+				-1.8
1,553,033	-				-2.3
1,553,033	-				-0.1
1,553,100	+		EFB2_01488	0.12	+0.4
1,553,100	+		EFB2_01488	0.12	-0.6
1,553,100	+		EFB2_01488	0.12	-2.0
1,553,100	+		EFB2_01488	0.12	-1.2
1,553,100	+		EFB2_01488	0.12	-0.0
1,553,100	+		EFB2_01488	0.12	+1.2
1,553,101	-		EFB2_01488	0.12	-0.5
1,553,101	-		EFB2_01488	0.12	+1.1
1,553,101	-		EFB2_01488	0.12	+1.0
1,553,101	-		EFB2_01488	0.12	+0.4
1,553,101	-		EFB2_01488	0.12	+0.5
1,553,101	-		EFB2_01488	0.12	-1.6
1,553,101	-		EFB2_01488	0.12	-3.4
1,553,101	-		EFB2_01488	0.12	-0.3
1,553,101	-		EFB2_01488	0.12	+1.1
1,553,101	-		EFB2_01488	0.12	-0.4
1,553,104	+		EFB2_01488	0.12	-1.2
1,553,104	+		EFB2_01488	0.12	+0.7
1,553,104	+		EFB2_01488	0.12	-0.9
1,553,104	+		EFB2_01488	0.12	-0.3
1,553,104	+		EFB2_01488	0.12	-3.0
1,553,105	-		EFB2_01488	0.12	-0.9
1,553,145	-		EFB2_01488	0.15	-1.3
1,553,145	-		EFB2_01488	0.15	-0.1
1,553,145	-		EFB2_01488	0.15	+1.1
1,553,145	-		EFB2_01488	0.15	-1.6
1,553,146	+		EFB2_01488	0.16	-1.2
1,553,146	+		EFB2_01488	0.16	-2.6
1,553,146	+		EFB2_01488	0.16	+2.0
1,553,146	+		EFB2_01488	0.16	-1.1
1,553,146	+		EFB2_01488	0.16	-0.3
1,553,146	+		EFB2_01488	0.16	-1.2
1,553,146	+		EFB2_01488	0.16	+1.8
1,553,146	+		EFB2_01488	0.16	-2.7
1,553,146	+		EFB2_01488	0.16	+0.4
1,553,146	+		EFB2_01488	0.16	-2.5
1,553,146	+		EFB2_01488	0.16	-0.5
1,553,146	+		EFB2_01488	0.16	-1.1
1,553,146	+		EFB2_01488	0.16	-1.0
1,553,146	+		EFB2_01488	0.16	-0.9
1,553,146	+		EFB2_01488	0.16	-0.8
1,553,146	+		EFB2_01488	0.16	-1.8
1,553,146	+		EFB2_01488	0.16	-1.7
1,553,147	-		EFB2_01488	0.16	+0.1
1,553,147	-		EFB2_01488	0.16	-1.4
1,553,147	-		EFB2_01488	0.16	-1.4
1,553,147	-		EFB2_01488	0.16	+1.1
1,553,147	-		EFB2_01488	0.16	-0.5
1,553,147	-		EFB2_01488	0.16	-0.3
1,553,147	-		EFB2_01488	0.16	+1.7
1,553,147	-		EFB2_01488	0.16	+0.4
1,553,147	-		EFB2_01488	0.16	-0.7
1,553,147	-		EFB2_01488	0.16	+0.1
1,553,147	-		EFB2_01488	0.16	+0.5
1,553,147	-		EFB2_01488	0.16	-0.7
1,553,147	-		EFB2_01488	0.16	-0.5
1,553,147	-		EFB2_01488	0.16	-0.4
1,553,147	-		EFB2_01488	0.16	+1.8
1,553,147	-		EFB2_01488	0.16	-0.5
1,553,147	-		EFB2_01488	0.16	-2.1
1,553,147	-		EFB2_01488	0.16	+1.1
1,553,147	-		EFB2_01488	0.16	-1.9
1,553,147	-		EFB2_01488	0.16	+0.5
1,553,171	-		EFB2_01488	0.18	+0.5
1,553,171	-		EFB2_01488	0.18	+1.4
1,553,191	+		EFB2_01488	0.19	-0.4
1,553,191	+		EFB2_01488	0.19	-0.5
1,553,191	+		EFB2_01488	0.19	+0.2
1,553,191	+		EFB2_01488	0.19	-2.3
1,553,191	+		EFB2_01488	0.19	+0.1
1,553,191	+		EFB2_01488	0.19	+2.1
1,553,191	+		EFB2_01488	0.19	-0.4
1,553,191	+		EFB2_01488	0.19	+1.0
1,553,192	-		EFB2_01488	0.19	-0.7
1,553,192	-		EFB2_01488	0.19	+1.1
1,553,192	-		EFB2_01488	0.19	-1.7
1,553,192	-		EFB2_01488	0.19	+0.3
1,553,192	-		EFB2_01488	0.19	-0.7
1,553,192	-		EFB2_01488	0.19	-1.2
1,553,192	-		EFB2_01488	0.19	-1.2
1,553,192	-		EFB2_01488	0.19	+1.2
1,553,192	-		EFB2_01488	0.19	+0.3
1,553,192	-		EFB2_01488	0.19	+0.2
1,553,192	-		EFB2_01488	0.19	-0.1
1,553,192	-		EFB2_01488	0.19	-2.2
1,553,226	+		EFB2_01488	0.22	-0.3
1,553,226	+		EFB2_01488	0.22	-1.0
1,553,226	+		EFB2_01488	0.22	+1.1
1,553,226	+		EFB2_01488	0.22	+0.0
1,553,226	+		EFB2_01488	0.22	-2.9
1,553,227	-		EFB2_01488	0.22	-0.5
1,553,227	-		EFB2_01488	0.22	-0.3
1,553,227	-		EFB2_01488	0.22	-0.9
1,553,227	-		EFB2_01488	0.22	-2.8
1,553,227	-		EFB2_01488	0.22	-0.5
1,553,227	-		EFB2_01488	0.22	+0.2
1,553,227	-		EFB2_01488	0.22	-0.5
1,553,227	-		EFB2_01488	0.22	+0.3
1,553,314	+		EFB2_01488	0.29	-1.9
1,553,315	-		EFB2_01488	0.29	-0.2
1,553,347	+		EFB2_01488	0.32	+1.1
1,553,366	-		EFB2_01488	0.33	+1.1
1,553,366	-		EFB2_01488	0.33	+0.8
1,553,366	-		EFB2_01488	0.33	+1.0
1,553,404	+		EFB2_01488	0.36	+0.3
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