Strain Fitness in Escherichia fergusonii Becca around EFB2_01350

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
1,399,474	+		EFB2_01349	0.40	-0.8
1,399,474	+		EFB2_01349	0.40	+2.1
1,399,474	+		EFB2_01349	0.40	-0.0
1,399,474	+		EFB2_01349	0.40	-0.6
1,399,474	+		EFB2_01349	0.40	+1.1
1,399,474	+		EFB2_01349	0.40	-0.5
1,399,474	+		EFB2_01349	0.40	-1.6
1,399,474	+		EFB2_01349	0.40	+0.7
1,399,474	+		EFB2_01349	0.40	+0.6
1,399,474	+		EFB2_01349	0.40	+0.6
1,399,474	+		EFB2_01349	0.40	-0.4
1,399,474	+		EFB2_01349	0.40	-1.7
1,399,474	+		EFB2_01349	0.40	-1.3
1,399,475	-		EFB2_01349	0.40	-0.0
1,399,475	-		EFB2_01349	0.40	-0.5
1,399,475	-		EFB2_01349	0.40	+0.2
1,399,475	-		EFB2_01349	0.40	-1.5
1,399,475	-		EFB2_01349	0.40	+0.0
1,399,475	-		EFB2_01349	0.40	+0.1
1,399,475	-		EFB2_01349	0.40	-2.0
1,399,475	-		EFB2_01349	0.40	-0.1
1,399,475	-		EFB2_01349	0.40	-0.1
1,399,575	+		EFB2_01349	0.47	+2.0
1,399,575	+		EFB2_01349	0.47	+0.8
1,399,575	+		EFB2_01349	0.47	-0.2
1,399,575	+		EFB2_01349	0.47	+1.5
1,399,575	+		EFB2_01349	0.47	-0.6
1,399,575	+		EFB2_01349	0.47	+1.0
1,399,575	+		EFB2_01349	0.47	+1.3
1,399,575	+		EFB2_01349	0.47	-0.2
1,399,575	+		EFB2_01349	0.47	+0.3
1,399,575	+		EFB2_01349	0.47	-0.7
1,399,576	-		EFB2_01349	0.47	+0.7
1,399,576	-		EFB2_01349	0.47	+0.9
1,399,576	-		EFB2_01349	0.47	-0.7
1,399,576	-		EFB2_01349	0.47	-2.0
1,399,576	-		EFB2_01349	0.47	-1.3
1,399,576	-		EFB2_01349	0.47	+0.6
1,399,576	-		EFB2_01349	0.47	+0.2
1,399,576	-		EFB2_01349	0.47	-1.4
1,399,576	-		EFB2_01349	0.47	-3.0
1,399,584	+		EFB2_01349	0.48	-0.7
1,399,584	+		EFB2_01349	0.48	+0.3
1,399,584	+		EFB2_01349	0.48	-1.7
1,399,584	+		EFB2_01349	0.48	-1.5
1,399,584	+		EFB2_01349	0.48	+1.0
1,399,584	+		EFB2_01349	0.48	+1.1
1,399,584	+		EFB2_01349	0.48	+0.3
1,399,584	+		EFB2_01349	0.48	+0.3
1,399,584	+		EFB2_01349	0.48	-1.0
1,399,584	+		EFB2_01349	0.48	-2.5
1,399,584	+		EFB2_01349	0.48	+0.4
1,399,584	+		EFB2_01349	0.48	+1.3
1,399,584	+		EFB2_01349	0.48	-0.2
1,399,584	+		EFB2_01349	0.48	-0.9
1,399,584	+		EFB2_01349	0.48	-0.3
1,399,584	+		EFB2_01349	0.48	+1.0
1,399,584	+		EFB2_01349	0.48	-0.8
1,399,584	+		EFB2_01349	0.48	+0.1
1,399,584	+		EFB2_01349	0.48	-0.2
1,399,584	+		EFB2_01349	0.48	-0.2
1,399,585	-		EFB2_01349	0.48	+0.5
1,399,585	-		EFB2_01349	0.48	+2.1
1,399,585	-		EFB2_01349	0.48	+0.4
1,399,585	-		EFB2_01349	0.48	+0.4
1,399,585	-		EFB2_01349	0.48	-0.9
1,399,585	-		EFB2_01349	0.48	+0.6
1,399,585	-		EFB2_01349	0.48	+0.7
1,399,585	-		EFB2_01349	0.48	-1.6
1,399,585	-		EFB2_01349	0.48	-3.5
1,399,585	-		EFB2_01349	0.48	-0.5
1,399,585	-		EFB2_01349	0.48	+0.1
1,399,585	-		EFB2_01349	0.48	-2.6
1,399,585	-		EFB2_01349	0.48	-0.9
1,399,585	-		EFB2_01349	0.48	+0.2
1,399,585	-		EFB2_01349	0.48	-1.2
1,399,585	-		EFB2_01349	0.48	+0.7
1,399,596	-		EFB2_01349	0.48	-0.5
1,399,620	+		EFB2_01349	0.50	+1.1
1,399,621	-		EFB2_01349	0.50	-0.7
1,399,621	-		EFB2_01349	0.50	-0.1
1,399,680	-		EFB2_01349	0.54	-2.0
1,399,686	+		EFB2_01349	0.54	+1.1
1,399,687	-		EFB2_01349	0.54	+0.8
1,399,687	-		EFB2_01349	0.54	-2.0
1,399,687	-		EFB2_01349	0.54	-0.7
1,399,704	+		EFB2_01349	0.55	-2.5
1,399,713	+		EFB2_01349	0.56	-1.2
1,399,713	+		EFB2_01349	0.56	+0.1
1,399,714	-		EFB2_01349	0.56	+0.9
1,399,714	-		EFB2_01349	0.56	+0.1
1,399,714	-		EFB2_01349	0.56	-1.4
1,399,719	-		EFB2_01349	0.56	-0.2
1,399,719	-		EFB2_01349	0.56	+0.9
1,399,719	-		EFB2_01349	0.56	-2.6
1,399,804	+		EFB2_01349	0.62	+0.4
1,399,804	+		EFB2_01349	0.62	+0.3
1,399,804	+		EFB2_01349	0.62	+0.4
1,399,804	+		EFB2_01349	0.62	+1.7
1,399,804	+		EFB2_01349	0.62	+2.6
1,399,804	+		EFB2_01349	0.62	-0.0
1,399,804	+		EFB2_01349	0.62	+1.3
1,399,804	+		EFB2_01349	0.62	-2.5
1,399,804	+		EFB2_01349	0.62	+1.2
1,399,804	+		EFB2_01349	0.62	-0.7
1,399,804	+		EFB2_01349	0.62	-1.3
1,399,804	+		EFB2_01349	0.62	+0.9
1,399,804	+		EFB2_01349	0.62	+1.6
1,399,804	+		EFB2_01349	0.62	+0.9
1,399,804	+		EFB2_01349	0.62	+0.2
1,399,804	+		EFB2_01349	0.62	+0.5
1,399,805	-		EFB2_01349	0.62	+0.3
1,399,805	-		EFB2_01349	0.62	+0.5
1,399,805	-		EFB2_01349	0.62	-2.0
1,399,805	-		EFB2_01349	0.62	-0.7
1,399,805	-		EFB2_01349	0.62	-0.4
1,399,805	-		EFB2_01349	0.62	+0.3
1,399,805	-		EFB2_01349	0.62	-2.5
1,399,805	-		EFB2_01349	0.62	+0.5
1,399,805	-		EFB2_01349	0.62	+0.5
1,399,805	-		EFB2_01349	0.62	+1.3
1,399,805	-		EFB2_01349	0.62	+0.4
1,399,885	+		EFB2_01349	0.67	+1.1
1,399,885	+		EFB2_01349	0.67	+0.0
1,399,885	+		EFB2_01349	0.67	+0.4
1,399,885	+		EFB2_01349	0.67	+1.5
1,399,885	+		EFB2_01349	0.67	+0.3
1,399,886	-		EFB2_01349	0.68	-1.6
1,399,886	-		EFB2_01349	0.68	+1.6
1,399,886	-		EFB2_01349	0.68	-0.1
1,399,886	-		EFB2_01349	0.68	-1.5
1,399,886	-		EFB2_01349	0.68	-0.1
1,399,887	+		EFB2_01349	0.68	-1.5
1,399,887	+		EFB2_01349	0.68	-0.3
1,399,887	+		EFB2_01349	0.68	+0.1
1,399,887	+		EFB2_01349	0.68	+0.0
1,399,888	-		EFB2_01349	0.68	+0.5
1,399,888	-		EFB2_01349	0.68	+0.1
1,399,888	-		EFB2_01349	0.68	-3.7
1,399,888	-		EFB2_01349	0.68	+0.3
1,399,944	+		EFB2_01349	0.71	+1.7
1,399,944	+		EFB2_01349	0.71	+0.6
1,399,945	-		EFB2_01349	0.71	+1.1
1,399,945	-		EFB2_01349	0.71	-0.2
1,399,945	-		EFB2_01349	0.71	+0.5
1,399,945	-		EFB2_01349	0.71	-1.0
1,399,945	-		EFB2_01349	0.71	+1.2
1,400,122	+		EFB2_01349	0.83	+0.2
1,400,122	+		EFB2_01349	0.83	+1.0
1,400,122	+		EFB2_01349	0.83	+1.0
1,400,123	-		EFB2_01349	0.83	+1.0
1,400,123	-		EFB2_01349	0.83	+1.4
1,400,194	+		EFB2_01349	0.88	+1.8
1,400,194	+		EFB2_01349	0.88	+0.9
1,400,194	+		EFB2_01349	0.88	+0.6
1,400,194	+		EFB2_01349	0.88	-1.2
1,400,194	+		EFB2_01349	0.88	+1.6
1,400,195	-		EFB2_01349	0.88	+0.2
1,400,195	-		EFB2_01349	0.88	-0.8
1,400,195	-		EFB2_01349	0.88	-0.7
1,400,195	-		EFB2_01349	0.88	+3.4
1,400,199	+		EFB2_01349	0.88	-0.6
1,400,199	+		EFB2_01349	0.88	+0.7
1,400,200	-		EFB2_01349	0.88	+1.1
1,400,241	+				+0.9
1,400,241	+				-1.6
1,400,242	-				+2.3
1,400,264	+				-2.5
1,400,264	+				+1.5
1,400,265	-				-1.7
1,400,294	+				+0.7
1,400,294	+				-0.1
1,400,295	-				-0.5
1,400,295	-				-2.4
1,400,295	-				+1.1
1,400,295	-				-2.1
1,400,295	-				+0.1
1,400,295	-				-0.7
1,400,304	+				+1.1
1,400,304	+				-2.5
1,400,304	+				-0.9
1,400,304	+				-0.5
1,400,304	+				+0.2
1,400,304	+				+1.5
1,400,305	-				+0.8
1,400,305	-				+1.3
1,400,305	-				+0.7
1,400,305	-				+0.0
1,400,305	-				-0.0
1,400,417	+				-0.4
1,400,417	+				+0.3
1,400,418	-				+0.0
1,400,418	-				-0.5
1,400,469	+				-2.8
1,400,470	-				-0.1
1,400,470	-				+0.1
1,400,470	-				-3.0
1,400,472	+				+0.2
1,400,473	-				+0.9
1,400,473	-				+0.7
1,400,473	-				+0.8
1,400,509	+		EFB2_01350	0.11	+0.2
1,400,509	+		EFB2_01350	0.11	+1.4
1,400,509	+		EFB2_01350	0.11	+1.1
1,400,619	+		EFB2_01350	0.22	+2.0
1,400,619	+		EFB2_01350	0.22	+1.2
1,400,619	+		EFB2_01350	0.22	-1.0
1,400,619	+		EFB2_01350	0.22	+0.4
1,400,619	+		EFB2_01350	0.22	-3.1
1,400,620	-		EFB2_01350	0.22	+2.0
1,400,620	-		EFB2_01350	0.22	-0.6
1,400,620	-		EFB2_01350	0.22	-2.0
1,400,620	-		EFB2_01350	0.22	-3.0
1,400,622	+		EFB2_01350	0.22	+0.6
1,400,622	+		EFB2_01350	0.22	-1.1
1,400,622	+		EFB2_01350	0.22	+1.1
1,400,622	+		EFB2_01350	0.22	+0.0
1,400,623	-		EFB2_01350	0.22	-0.3
1,400,741	+		EFB2_01350	0.34	-0.3
1,400,741	+		EFB2_01350	0.34	+0.3
1,400,741	+		EFB2_01350	0.34	-0.6
1,400,741	+		EFB2_01350	0.34	-3.5
1,400,741	+		EFB2_01350	0.34	-0.2
1,400,741	+		EFB2_01350	0.34	-0.3
1,400,741	+		EFB2_01350	0.34	+1.1
1,400,741	+		EFB2_01350	0.34	-0.4
1,400,741	+		EFB2_01350	0.34	-3.6
1,400,741	+		EFB2_01350	0.34	+0.7
1,400,742	-		EFB2_01350	0.34	+0.4
1,400,742	-		EFB2_01350	0.34	+0.3
1,400,742	-		EFB2_01350	0.34	+2.2
1,400,742	-		EFB2_01350	0.34	-1.1
1,400,742	-		EFB2_01350	0.34	+0.3
1,400,742	-		EFB2_01350	0.34	+0.3
1,400,742	-		EFB2_01350	0.34	-0.2
1,400,788	-		EFB2_01350	0.39	+1.1
1,400,850	+		EFB2_01350	0.45	-0.0
1,400,850	+		EFB2_01350	0.45	+1.6
1,400,850	+		EFB2_01350	0.45	+2.2
1,400,851	-		EFB2_01350	0.45	+0.9
1,400,944	+		EFB2_01350	0.54	+0.3
1,401,049	-		EFB2_01350	0.65	+1.7
1,401,051	+		EFB2_01350	0.65	+1.3
1,401,052	-		EFB2_01350	0.65	+0.9
1,401,075	+		EFB2_01350	0.67	-1.3
1,401,075	+		EFB2_01350	0.67	+0.7
1,401,076	-		EFB2_01350	0.68	+0.5
1,401,095	+		EFB2_01350	0.69	+0.4
1,401,095	+		EFB2_01350	0.69	+0.7
1,401,096	-		EFB2_01350	0.70	+2.0
1,401,096	-		EFB2_01350	0.70	-0.2
1,401,099	-		EFB2_01350	0.70	+0.4
1,401,255	-		EFB2_01350	0.85	-0.1
1,401,260	+		EFB2_01350	0.86	-0.1
1,401,260	+		EFB2_01350	0.86	-0.2
1,401,260	+		EFB2_01350	0.86	+1.2
1,401,261	-		EFB2_01350	0.86	-2.9
1,401,261	-		EFB2_01350	0.86	-1.3
1,401,264	+		EFB2_01350	0.86	+2.1
1,401,264	+		EFB2_01350	0.86	-1.0
1,401,264	+		EFB2_01350	0.86	+0.1
1,401,264	+		EFB2_01350	0.86	+1.3
1,401,264	+		EFB2_01350	0.86	+1.1
1,401,264	+		EFB2_01350	0.86	-1.0
1,401,264	+		EFB2_01350	0.86	-0.2
1,401,265	-		EFB2_01350	0.86	+0.8
1,401,265	-		EFB2_01350	0.86	-1.2
1,401,265	-		EFB2_01350	0.86	+1.3
1,401,265	-		EFB2_01350	0.86	-0.2
1,401,265	-		EFB2_01350	0.86	-0.7
1,401,287	+		EFB2_01350	0.89	+0.8
1,401,300	+				+1.1
1,401,300	+				-0.1
1,401,300	+				+0.8
1,401,324	-				-1.0
1,401,360	+				+1.4
1,401,361	-				+2.9
1,401,384	+				-1.5
1,401,384	+				-0.1
1,401,397	+				-0.1
1,401,397	+				-0.5
1,401,398	-				-1.3
1,401,398	-				-0.0
1,401,405	-				-2.6
1,401,405	-				-0.9
1,401,446	+				-1.2
1,401,447	-				+0.5
1,401,447	-				-0.4
1,401,447	-				-0.6
1,401,452	+				+0.3
1,401,464	+				+1.7
1,401,464	+				+1.0
1,401,465	-				+0.5
1,401,465	-				-2.6
1,401,486	+				+0.5
1,401,486	+				-0.1
1,401,486	+				+0.8
1,401,486	+				+0.9
1,401,486	+				+1.1
1,401,486	+				+0.5
1,401,486	+				+0.8
1,401,486	+				+0.4
1,401,487	-				+0.2
1,401,487	-				+1.1
1,401,487	-				+0.9
1,401,487	-				-2.2
1,401,487	-				-1.9
1,401,487	-				+0.3
1,401,487	-				+0.5
1,401,487	-				+0.1
1,401,487	-				-2.3
1,401,490	+				-2.1
1,401,490	+				+0.0
1,401,491	-				+2.3
1,401,491	-				-0.5
1,401,491	-				-3.3
1,401,546	-				-0.8
1,401,553	+				-1.2
1,401,553	+				+1.5
1,401,554	-				+0.2
1,401,560	+				+0.7
1,401,561	-				-0.4
1,401,600	+		EFB2_01351	0.13	+0.5
1,401,600	+		EFB2_01351	0.13	-2.6
1,401,600	+		EFB2_01351	0.13	-0.3
1,401,600	+		EFB2_01351	0.13	+0.2
1,401,600	+		EFB2_01351	0.13	+1.5
1,401,600	+		EFB2_01351	0.13	-0.0
1,401,600	+		EFB2_01351	0.13	-0.7
1,401,600	+		EFB2_01351	0.13	-0.9
1,401,600	+		EFB2_01351	0.13	-0.4
1,401,600	+		EFB2_01351	0.13	-2.6
1,401,600	+		EFB2_01351	0.13	-1.7
1,401,600	+		EFB2_01351	0.13	-0.2
1,401,600	+		EFB2_01351	0.13	+1.1
1,401,600	+		EFB2_01351	0.13	+2.1
1,401,600	+		EFB2_01351	0.13	-2.2
1,401,600	+		EFB2_01351	0.13	+0.8
1,401,600	+		EFB2_01351	0.13	+0.1
1,401,600	+		EFB2_01351	0.13	-0.5
1,401,600	+		EFB2_01351	0.13	-2.6
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