Strain Fitness in Escherichia fergusonii Becca around EFB2_01140

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
1,195,636	-				-0.0
1,195,636	-				-2.3
1,195,636	-				-0.6
1,195,683	+				+0.8
1,195,683	+				+0.5
1,195,683	+				+1.8
1,195,683	+				-1.8
1,195,683	+				+4.4
1,195,684	-				-2.3
1,195,695	+				-0.2
1,195,695	+				+1.3
1,195,695	+				-0.6
1,195,695	+				+0.7
1,195,695	+				-1.2
1,195,696	-				-0.9
1,195,696	-				-2.3
1,195,696	-				-0.2
1,195,696	-				+1.3
1,195,696	-				-0.3
1,195,696	-				+2.1
1,195,696	-				+0.3
1,195,706	+				-0.6
1,195,706	+				-0.6
1,195,706	+				+0.8
1,195,706	+				-0.5
1,195,706	+				+0.3
1,195,707	-				+0.2
1,195,712	+				+0.3
1,195,712	+				+0.3
1,195,713	-				-0.5
1,195,713	-				+0.3
1,195,713	-				-1.7
1,195,818	+		EFB2_01139	0.10	-2.1
1,195,819	-		EFB2_01139	0.10	-1.3
1,195,843	+		EFB2_01139	0.13	-0.1
1,195,844	-		EFB2_01139	0.13	+0.2
1,195,844	-		EFB2_01139	0.13	-0.2
1,195,844	-		EFB2_01139	0.13	-0.3
1,195,844	-		EFB2_01139	0.13	-0.2
1,195,946	+		EFB2_01139	0.24	-2.0
1,195,946	+		EFB2_01139	0.24	+0.3
1,195,946	+		EFB2_01139	0.24	-0.5
1,195,946	+		EFB2_01139	0.24	+0.7
1,195,946	+		EFB2_01139	0.24	-2.2
1,195,946	+		EFB2_01139	0.24	-0.3
1,195,947	-		EFB2_01139	0.25	-1.3
1,195,947	-		EFB2_01139	0.25	-0.3
1,195,947	-		EFB2_01139	0.25	+1.8
1,195,947	-		EFB2_01139	0.25	-1.7
1,195,947	-		EFB2_01139	0.25	+0.1
1,195,947	-		EFB2_01139	0.25	-0.9
1,195,947	-		EFB2_01139	0.25	+0.3
1,195,947	-		EFB2_01139	0.25	-0.2
1,195,947	-		EFB2_01139	0.25	+0.6
1,195,947	-		EFB2_01139	0.25	+3.3
1,195,959	-		EFB2_01139	0.26	-0.5
1,195,959	-		EFB2_01139	0.26	-1.7
1,195,959	-		EFB2_01139	0.26	+1.2
1,195,985	+		EFB2_01139	0.29	-2.5
1,195,985	+		EFB2_01139	0.29	+0.5
1,195,985	+		EFB2_01139	0.29	+0.5
1,195,985	+		EFB2_01139	0.29	-1.0
1,195,986	-		EFB2_01139	0.29	+1.0
1,195,986	-		EFB2_01139	0.29	-0.3
1,195,986	-		EFB2_01139	0.29	+0.4
1,195,986	-		EFB2_01139	0.29	+1.4
1,195,986	-		EFB2_01139	0.29	+0.2
1,195,986	-		EFB2_01139	0.29	-3.1
1,195,986	-		EFB2_01139	0.29	+1.3
1,195,987	+		EFB2_01139	0.29	-0.5
1,195,987	+		EFB2_01139	0.29	-1.2
1,195,987	+		EFB2_01139	0.29	+0.7
1,195,987	+		EFB2_01139	0.29	-2.8
1,195,987	+		EFB2_01139	0.29	-2.7
1,195,987	+		EFB2_01139	0.29	+0.7
1,195,987	+		EFB2_01139	0.29	+1.9
1,195,987	+		EFB2_01139	0.29	+0.5
1,195,987	+		EFB2_01139	0.29	+1.2
1,195,987	+		EFB2_01139	0.29	-0.7
1,195,988	-		EFB2_01139	0.29	+1.9
1,195,988	-		EFB2_01139	0.29	+1.5
1,195,988	-		EFB2_01139	0.29	+0.0
1,195,988	-		EFB2_01139	0.29	+0.7
1,195,988	-		EFB2_01139	0.29	-3.9
1,195,988	-		EFB2_01139	0.29	-1.0
1,195,991	+		EFB2_01139	0.30	+0.4
1,195,991	+		EFB2_01139	0.30	+0.7
1,195,991	+		EFB2_01139	0.30	-0.2
1,195,991	+		EFB2_01139	0.30	+0.4
1,195,992	-		EFB2_01139	0.30	+1.2
1,195,992	-		EFB2_01139	0.30	-1.8
1,195,992	-		EFB2_01139	0.30	-1.2
1,196,006	+		EFB2_01139	0.31	-0.4
1,196,006	+		EFB2_01139	0.31	-2.9
1,196,006	+		EFB2_01139	0.31	-0.5
1,196,006	+		EFB2_01139	0.31	-0.3
1,196,006	+		EFB2_01139	0.31	-2.8
1,196,006	+		EFB2_01139	0.31	+1.2
1,196,006	+		EFB2_01139	0.31	+2.0
1,196,007	-		EFB2_01139	0.31	-0.1
1,196,007	-		EFB2_01139	0.31	+0.1
1,196,007	-		EFB2_01139	0.31	+2.6
1,196,007	-		EFB2_01139	0.31	-1.2
1,196,007	-		EFB2_01139	0.31	-3.5
1,196,027	+		EFB2_01139	0.34	-1.4
1,196,028	-		EFB2_01139	0.34	-0.7
1,196,028	-		EFB2_01139	0.34	-2.0
1,196,028	-		EFB2_01139	0.34	-0.3
1,196,028	-		EFB2_01139	0.34	+0.3
1,196,028	-		EFB2_01139	0.34	+0.2
1,196,028	-		EFB2_01139	0.34	+0.1
1,196,042	+		EFB2_01139	0.35	+1.1
1,196,044	+		EFB2_01139	0.35	+0.1
1,196,044	+		EFB2_01139	0.35	+1.2
1,196,044	+		EFB2_01139	0.35	+0.3
1,196,044	+		EFB2_01139	0.35	-1.7
1,196,044	+		EFB2_01139	0.35	+0.3
1,196,045	-		EFB2_01139	0.36	+0.1
1,196,046	+		EFB2_01139	0.36	+0.5
1,196,046	+		EFB2_01139	0.36	+0.1
1,196,046	+		EFB2_01139	0.36	+0.5
1,196,046	+		EFB2_01139	0.36	-0.2
1,196,047	-		EFB2_01139	0.36	+2.4
1,196,047	-		EFB2_01139	0.36	-1.6
1,196,047	-		EFB2_01139	0.36	+0.2
1,196,047	-		EFB2_01139	0.36	-0.5
1,196,047	-		EFB2_01139	0.36	+1.2
1,196,047	-		EFB2_01139	0.36	+0.8
1,196,047	-		EFB2_01139	0.36	+1.3
1,196,047	-		EFB2_01139	0.36	+0.4
1,196,062	+		EFB2_01139	0.37	-0.4
1,196,062	+		EFB2_01139	0.37	+1.2
1,196,063	-		EFB2_01139	0.38	-3.5
1,196,072	+		EFB2_01139	0.39	+1.1
1,196,072	+		EFB2_01139	0.39	-0.5
1,196,072	+		EFB2_01139	0.39	-0.3
1,196,072	+		EFB2_01139	0.39	+0.6
1,196,072	+		EFB2_01139	0.39	+0.6
1,196,072	+		EFB2_01139	0.39	-0.5
1,196,073	-		EFB2_01139	0.39	-1.2
1,196,073	-		EFB2_01139	0.39	+0.1
1,196,088	-		EFB2_01139	0.40	+1.1
1,196,090	+		EFB2_01139	0.41	-1.7
1,196,090	+		EFB2_01139	0.41	+0.7
1,196,135	+		EFB2_01139	0.46	+0.6
1,196,149	+		EFB2_01139	0.47	-1.9
1,196,149	+		EFB2_01139	0.47	+1.8
1,196,149	+		EFB2_01139	0.47	+1.3
1,196,192	+		EFB2_01139	0.52	-1.3
1,196,193	-		EFB2_01139	0.52	-0.4
1,196,230	+		EFB2_01139	0.56	-2.9
1,196,233	+		EFB2_01139	0.57	-1.0
1,196,233	+		EFB2_01139	0.57	+2.1
1,196,233	+		EFB2_01139	0.57	+0.1
1,196,234	-		EFB2_01139	0.57	+0.4
1,196,234	-		EFB2_01139	0.57	+0.2
1,196,234	-		EFB2_01139	0.57	+1.3
1,196,234	-		EFB2_01139	0.57	-0.1
1,196,234	-		EFB2_01139	0.57	+0.1
1,196,269	+		EFB2_01139	0.61	+1.0
1,196,272	+		EFB2_01139	0.61	-0.5
1,196,272	+		EFB2_01139	0.61	+1.1
1,196,272	+		EFB2_01139	0.61	+2.3
1,196,275	+		EFB2_01139	0.61	-1.5
1,196,276	-		EFB2_01139	0.61	-0.9
1,196,276	-		EFB2_01139	0.61	-1.1
1,196,276	-		EFB2_01139	0.61	+0.8
1,196,276	-		EFB2_01139	0.61	+1.3
1,196,312	-		EFB2_01139	0.65	+0.4
1,196,312	-		EFB2_01139	0.65	-0.3
1,196,312	-		EFB2_01139	0.65	-1.2
1,196,312	-		EFB2_01139	0.65	+1.9
1,196,330	+		EFB2_01139	0.67	+1.2
1,196,331	-		EFB2_01139	0.68	+2.4
1,196,336	+		EFB2_01139	0.68	+1.0
1,196,336	+		EFB2_01139	0.68	+0.7
1,196,336	+		EFB2_01139	0.68	+1.8
1,196,336	+		EFB2_01139	0.68	+0.5
1,196,336	+		EFB2_01139	0.68	+0.4
1,196,336	+		EFB2_01139	0.68	-1.2
1,196,336	+		EFB2_01139	0.68	+0.1
1,196,336	+		EFB2_01139	0.68	-2.1
1,196,336	+		EFB2_01139	0.68	-1.7
1,196,337	-		EFB2_01139	0.68	-1.4
1,196,337	-		EFB2_01139	0.68	+1.6
1,196,337	-		EFB2_01139	0.68	+0.1
1,196,337	-		EFB2_01139	0.68	+0.2
1,196,337	-		EFB2_01139	0.68	+1.4
1,196,337	-		EFB2_01139	0.68	-1.1
1,196,337	-		EFB2_01139	0.68	+0.7
1,196,337	-		EFB2_01139	0.68	+0.4
1,196,337	-		EFB2_01139	0.68	-2.0
1,196,378	-		EFB2_01139	0.73	-1.3
1,196,425	+		EFB2_01139	0.78	-1.1
1,196,425	+		EFB2_01139	0.78	-1.5
1,196,425	+		EFB2_01139	0.78	+0.5
1,196,425	+		EFB2_01139	0.78	+0.5
1,196,425	+		EFB2_01139	0.78	+0.3
1,196,426	-		EFB2_01139	0.78	-1.0
1,196,426	-		EFB2_01139	0.78	-0.6
1,196,426	-		EFB2_01139	0.78	-0.8
1,196,426	-		EFB2_01139	0.78	+0.0
1,196,426	-		EFB2_01139	0.78	-0.4
1,196,426	-		EFB2_01139	0.78	-0.5
1,196,426	-		EFB2_01139	0.78	-0.1
1,196,426	-		EFB2_01139	0.78	-4.2
1,196,426	-		EFB2_01139	0.78	+1.3
1,196,436	-		EFB2_01139	0.79	+0.6
1,196,436	-		EFB2_01139	0.79	+0.8
1,196,476	+		EFB2_01139	0.84	-1.1
1,196,477	-		EFB2_01139	0.84	-0.9
1,196,499	-		EFB2_01139	0.86	-0.4
1,196,499	-		EFB2_01139	0.86	+0.8
1,196,513	+		EFB2_01139	0.88	-1.3
1,196,526	-		EFB2_01139	0.89	-0.9
1,196,538	+				+2.4
1,196,538	+				+0.7
1,196,538	+				-0.4
1,196,539	-				-2.1
1,196,539	-				+1.1
1,196,539	-				+0.1
1,196,539	-				+0.4
1,196,539	-				-1.1
1,196,539	-				-1.2
1,196,555	+				+0.7
1,196,556	-				-0.2
1,196,556	-				+0.9
1,196,570	-				+1.1
1,196,599	+				-0.1
1,196,620	+				+0.6
1,196,620	+				-1.6
1,196,621	-				-0.6
1,196,645	+				+3.9
1,196,646	-				+0.1
1,196,646	-				+1.0
1,196,664	+				+0.6
1,196,664	+				-0.9
1,196,664	+				-2.5
1,196,678	+				+2.0
1,196,682	+				-0.7
1,196,682	+				-0.5
1,196,682	+				+1.1
1,196,683	-				-0.2
1,196,725	+		EFB2_01140	0.15	-1.1
1,196,725	+		EFB2_01140	0.15	+0.2
1,196,726	-		EFB2_01140	0.15	-0.2
1,196,749	-		EFB2_01140	0.19	+1.4
1,196,777	+		EFB2_01140	0.24	-2.3
1,196,777	+		EFB2_01140	0.24	-0.3
1,196,777	+		EFB2_01140	0.24	+0.9
1,196,778	-		EFB2_01140	0.24	-1.5
1,196,778	-		EFB2_01140	0.24	+0.7
1,196,778	-		EFB2_01140	0.24	-0.2
1,196,779	+		EFB2_01140	0.24	-0.5
1,196,779	+		EFB2_01140	0.24	+0.5
1,196,779	+		EFB2_01140	0.24	-2.7
1,196,779	+		EFB2_01140	0.24	+0.9
1,196,780	-		EFB2_01140	0.24	-0.3
1,196,780	-		EFB2_01140	0.24	+1.0
1,196,795	+		EFB2_01140	0.27	+0.3
1,196,798	+		EFB2_01140	0.27	-1.1
1,196,798	+		EFB2_01140	0.27	-0.2
1,196,799	-		EFB2_01140	0.27	-0.7
1,196,799	-		EFB2_01140	0.27	-0.2
1,196,800	+		EFB2_01140	0.28	+0.1
1,196,800	+		EFB2_01140	0.28	+1.2
1,196,801	-		EFB2_01140	0.28	-1.3
1,196,801	-		EFB2_01140	0.28	+5.4
1,196,801	-		EFB2_01140	0.28	-1.7
1,196,801	-		EFB2_01140	0.28	-1.3
1,196,801	-		EFB2_01140	0.28	-0.2
1,196,880	+		EFB2_01140	0.41	-0.8
1,196,881	-		EFB2_01140	0.41	+0.1
1,196,900	+		EFB2_01140	0.44	+0.5
1,196,900	+		EFB2_01140	0.44	-1.1
1,196,903	+		EFB2_01140	0.45	+1.1
1,196,903	+		EFB2_01140	0.45	-1.5
1,196,904	-		EFB2_01140	0.45	-1.0
1,196,904	-		EFB2_01140	0.45	-2.4
1,196,911	-		EFB2_01140	0.46	-1.4
1,196,961	+		EFB2_01140	0.54	-2.3
1,196,999	+		EFB2_01140	0.61	-0.1
1,197,011	+		EFB2_01140	0.63	-1.6
1,197,020	+		EFB2_01140	0.64	+1.7
1,197,020	+		EFB2_01140	0.64	+0.8
1,197,020	+		EFB2_01140	0.64	-0.4
1,197,020	+		EFB2_01140	0.64	-0.1
1,197,020	+		EFB2_01140	0.64	-1.5
1,197,020	+		EFB2_01140	0.64	-1.3
1,197,020	+		EFB2_01140	0.64	+0.6
1,197,020	+		EFB2_01140	0.64	+1.0
1,197,021	-		EFB2_01140	0.64	+0.2
1,197,021	-		EFB2_01140	0.64	-2.6
1,197,021	-		EFB2_01140	0.64	+2.0
1,197,021	-		EFB2_01140	0.64	+1.5
1,197,021	-		EFB2_01140	0.64	-0.3
1,197,021	-		EFB2_01140	0.64	-0.4
1,197,021	-		EFB2_01140	0.64	+0.4
1,197,021	-		EFB2_01140	0.64	-3.3
1,197,033	+		EFB2_01140	0.66	+1.3
1,197,034	-		EFB2_01140	0.66	+1.2
1,197,042	+		EFB2_01140	0.68	+1.1
1,197,042	+		EFB2_01140	0.68	-0.4
1,197,042	+		EFB2_01140	0.68	+0.2
1,197,042	+		EFB2_01140	0.68	-0.4
1,197,042	+		EFB2_01140	0.68	+0.5
1,197,042	+		EFB2_01140	0.68	-0.7
1,197,042	+		EFB2_01140	0.68	-1.9
1,197,042	+		EFB2_01140	0.68	+0.8
1,197,042	+		EFB2_01140	0.68	+0.9
1,197,043	-		EFB2_01140	0.68	-0.1
1,197,043	-		EFB2_01140	0.68	+0.5
1,197,043	-		EFB2_01140	0.68	-1.2
1,197,043	-		EFB2_01140	0.68	+3.1
1,197,043	-		EFB2_01140	0.68	+0.5
1,197,043	-		EFB2_01140	0.68	-0.5
1,197,043	-		EFB2_01140	0.68	+1.9
1,197,043	-		EFB2_01140	0.68	+0.4
1,197,045	+		EFB2_01140	0.68	+0.0
1,197,045	+		EFB2_01140	0.68	-0.5
1,197,046	-		EFB2_01140	0.68	+0.8
1,197,046	-		EFB2_01140	0.68	-0.8
1,197,067	+		EFB2_01140	0.72	+1.2
1,197,074	+		EFB2_01140	0.73	+0.3
1,197,074	+		EFB2_01140	0.73	+0.9
1,197,075	-		EFB2_01140	0.73	-2.6
1,197,075	-		EFB2_01140	0.73	-0.0
1,197,075	-		EFB2_01140	0.73	+0.5
1,197,077	+		EFB2_01140	0.73	-2.0
1,197,077	+		EFB2_01140	0.73	-1.5
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