Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EFB2_00844 and EFB2_00845 are separated by 29 nucleotides EFB2_00845 and EFB2_00846 overlap by 1 nucleotides
EFB2_00844: EFB2_00844 - Type II secretion system protein C 2, at 866,202 to 867,044
_00844
EFB2_00845: EFB2_00845 - Secretin GspD 2, at 867,074 to 869,134
_00845
EFB2_00846: EFB2_00846 - Type II secretion system protein E, at 869,134 to 870,627
_00846
Position (kb) 867
868
869
870 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 866.081 kb on + strand at 866.082 kb on - strand at 866.082 kb on - strand at 866.118 kb on + strand at 866.119 kb on - strand at 866.174 kb on + strand at 866.234 kb on + strand at 866.237 kb on + strand at 866.238 kb on - strand at 866.256 kb on + strand at 866.257 kb on - strand at 866.293 kb on - strand, within EFB2_00844 at 866.294 kb on + strand, within EFB2_00844 at 866.318 kb on + strand, within EFB2_00844 at 866.368 kb on + strand, within EFB2_00844 at 866.369 kb on - strand, within EFB2_00844 at 866.397 kb on + strand, within EFB2_00844 at 866.397 kb on + strand, within EFB2_00844 at 866.397 kb on + strand, within EFB2_00844 at 866.397 kb on + strand, within EFB2_00844 at 866.420 kb on - strand, within EFB2_00844 at 866.459 kb on + strand, within EFB2_00844 at 866.459 kb on + strand, within EFB2_00844 at 866.459 kb on + strand, within EFB2_00844 at 866.460 kb on - strand, within EFB2_00844 at 866.460 kb on - strand, within EFB2_00844 at 866.460 kb on - strand, within EFB2_00844 at 866.535 kb on + strand, within EFB2_00844 at 866.535 kb on + strand, within EFB2_00844 at 866.535 kb on + strand, within EFB2_00844 at 866.535 kb on + strand, within EFB2_00844 at 866.535 kb on + strand, within EFB2_00844 at 866.535 kb on + strand, within EFB2_00844 at 866.535 kb on + strand, within EFB2_00844 at 866.535 kb on + strand, within EFB2_00844 at 866.535 kb on + strand, within EFB2_00844 at 866.535 kb on + strand, within EFB2_00844 at 866.536 kb on - strand, within EFB2_00844 at 866.536 kb on - strand, within EFB2_00844 at 866.536 kb on - strand, within EFB2_00844 at 866.536 kb on - strand, within EFB2_00844 at 866.536 kb on - strand, within EFB2_00844 at 866.536 kb on - strand, within EFB2_00844 at 866.611 kb on - strand, within EFB2_00844 at 866.792 kb on + strand, within EFB2_00844 at 866.792 kb on + strand, within EFB2_00844 at 866.793 kb on - strand, within EFB2_00844 at 866.796 kb on + strand, within EFB2_00844 at 866.796 kb on + strand, within EFB2_00844 at 866.796 kb on + strand, within EFB2_00844 at 866.796 kb on + strand, within EFB2_00844 at 866.796 kb on + strand, within EFB2_00844 at 866.796 kb on + strand, within EFB2_00844 at 866.796 kb on + strand, within EFB2_00844 at 866.796 kb on + strand, within EFB2_00844 at 866.796 kb on + strand, within EFB2_00844 at 866.796 kb on + strand, within EFB2_00844 at 866.796 kb on + strand, within EFB2_00844 at 866.796 kb on + strand, within EFB2_00844 at 866.796 kb on + strand, within EFB2_00844 at 866.796 kb on + strand, within EFB2_00844 at 866.796 kb on + strand, within EFB2_00844 at 866.796 kb on + strand, within EFB2_00844 at 866.796 kb on + strand, within EFB2_00844 at 866.796 kb on + strand, within EFB2_00844 at 866.796 kb on + strand, within EFB2_00844 at 866.796 kb on + strand, within EFB2_00844 at 866.796 kb on + strand, within EFB2_00844 at 866.797 kb on - strand, within EFB2_00844 at 866.797 kb on - strand, within EFB2_00844 at 866.797 kb on - strand, within EFB2_00844 at 866.797 kb on - strand, within EFB2_00844 at 866.797 kb on - strand, within EFB2_00844 at 866.797 kb on - strand, within EFB2_00844 at 866.797 kb on - strand, within EFB2_00844 at 866.797 kb on - strand, within EFB2_00844 at 866.797 kb on - strand, within EFB2_00844 at 866.797 kb on - strand, within EFB2_00844 at 866.797 kb on - strand, within EFB2_00844 at 866.797 kb on - strand, within EFB2_00844 at 866.797 kb on - strand, within EFB2_00844 at 866.797 kb on - strand, within EFB2_00844 at 866.797 kb on - strand, within EFB2_00844 at 866.797 kb on - strand, within EFB2_00844 at 866.798 kb on + strand, within EFB2_00844 at 866.798 kb on + strand, within EFB2_00844 at 866.798 kb on + strand, within EFB2_00844 at 866.799 kb on - strand, within EFB2_00844 at 866.799 kb on - strand, within EFB2_00844 at 866.807 kb on + strand, within EFB2_00844 at 866.807 kb on + strand, within EFB2_00844 at 866.807 kb on + strand, within EFB2_00844 at 866.808 kb on - strand, within EFB2_00844 at 866.808 kb on - strand, within EFB2_00844 at 866.808 kb on - strand, within EFB2_00844 at 866.808 kb on - strand, within EFB2_00844 at 866.808 kb on - strand, within EFB2_00844 at 866.808 kb on - strand, within EFB2_00844 at 866.808 kb on - strand, within EFB2_00844 at 866.808 kb on - strand, within EFB2_00844 at 866.819 kb on + strand, within EFB2_00844 at 866.819 kb on + strand, within EFB2_00844 at 866.820 kb on - strand, within EFB2_00844 at 866.820 kb on - strand, within EFB2_00844 at 866.889 kb on - strand, within EFB2_00844 at 866.914 kb on + strand, within EFB2_00844 at 866.968 kb on + strand at 866.968 kb on + strand at 866.968 kb on + strand at 866.968 kb on + strand at 866.968 kb on + strand at 866.969 kb on - strand at 866.969 kb on - strand at 866.969 kb on - strand at 866.969 kb on - strand at 866.969 kb on - strand at 866.969 kb on - strand at 866.969 kb on - strand at 866.969 kb on - strand at 866.969 kb on - strand at 866.969 kb on - strand at 866.993 kb on + strand at 866.993 kb on + strand at 866.994 kb on - strand at 866.994 kb on - strand at 866.994 kb on - strand at 867.001 kb on + strand at 867.001 kb on + strand at 867.001 kb on + strand at 867.002 kb on - strand at 867.052 kb on + strand at 867.052 kb on + strand at 867.052 kb on + strand at 867.052 kb on + strand at 867.053 kb on - strand at 867.088 kb on + strand at 867.088 kb on + strand at 867.088 kb on + strand at 867.088 kb on + strand at 867.088 kb on + strand at 867.089 kb on - strand at 867.089 kb on - strand at 867.089 kb on - strand at 867.089 kb on - strand at 867.089 kb on - strand at 867.089 kb on - strand at 867.089 kb on - strand at 867.089 kb on - strand at 867.089 kb on - strand at 867.089 kb on - strand at 867.098 kb on + strand at 867.100 kb on + strand at 867.100 kb on + strand at 867.100 kb on + strand at 867.100 kb on + strand at 867.100 kb on + strand at 867.100 kb on + strand at 867.100 kb on + strand at 867.100 kb on + strand at 867.100 kb on + strand at 867.100 kb on + strand at 867.100 kb on + strand at 867.101 kb on - strand at 867.101 kb on - strand at 867.101 kb on - strand at 867.101 kb on - strand at 867.101 kb on - strand at 867.101 kb on - strand at 867.101 kb on - strand at 867.101 kb on - strand at 867.101 kb on - strand at 867.101 kb on - strand at 867.101 kb on - strand at 867.109 kb on + strand at 867.109 kb on + strand at 867.110 kb on - strand at 867.110 kb on - strand at 867.110 kb on - strand at 867.110 kb on - strand at 867.145 kb on - strand at 867.175 kb on + strand at 867.175 kb on + strand at 867.175 kb on + strand at 867.175 kb on + strand at 867.175 kb on + strand at 867.175 kb on + strand at 867.175 kb on + strand at 867.175 kb on + strand at 867.175 kb on + strand at 867.175 kb on + strand at 867.175 kb on + strand at 867.175 kb on + strand at 867.175 kb on + strand at 867.175 kb on + strand at 867.175 kb on + strand at 867.176 kb on - strand at 867.176 kb on - strand at 867.176 kb on - strand at 867.176 kb on - strand at 867.176 kb on - strand at 867.176 kb on - strand at 867.176 kb on - strand at 867.176 kb on - strand at 867.176 kb on - strand at 867.176 kb on - strand at 867.176 kb on - strand at 867.176 kb on - strand at 867.176 kb on - strand at 867.176 kb on - strand at 867.226 kb on + strand at 867.226 kb on + strand at 867.227 kb on - strand at 867.227 kb on - strand at 867.269 kb on - strand at 867.269 kb on - strand at 867.271 kb on + strand at 867.271 kb on + strand at 867.271 kb on + strand at 867.272 kb on - strand at 867.272 kb on - strand at 867.283 kb on + strand, within EFB2_00845 at 867.284 kb on - strand, within EFB2_00845 at 867.284 kb on - strand, within EFB2_00845 at 867.347 kb on + strand, within EFB2_00845 at 867.347 kb on + strand, within EFB2_00845 at 867.350 kb on + strand, within EFB2_00845 at 867.350 kb on + strand, within EFB2_00845 at 867.350 kb on + strand, within EFB2_00845 at 867.350 kb on + strand, within EFB2_00845 at 867.357 kb on + strand, within EFB2_00845 at 867.357 kb on + strand, within EFB2_00845 at 867.358 kb on - strand, within EFB2_00845 at 867.358 kb on - strand, within EFB2_00845 at 867.386 kb on + strand, within EFB2_00845 at 867.387 kb on - strand, within EFB2_00845 at 867.387 kb on - strand, within EFB2_00845 at 867.387 kb on - strand, within EFB2_00845 at 867.396 kb on + strand, within EFB2_00845 at 867.485 kb on + strand, within EFB2_00845 at 867.485 kb on + strand, within EFB2_00845 at 867.485 kb on + strand, within EFB2_00845 at 867.485 kb on + strand, within EFB2_00845 at 867.485 kb on + strand, within EFB2_00845 at 867.486 kb on - strand, within EFB2_00845 at 867.486 kb on - strand, within EFB2_00845 at 867.486 kb on - strand, within EFB2_00845 at 867.486 kb on - strand, within EFB2_00845 at 867.486 kb on - strand, within EFB2_00845 at 867.486 kb on - strand, within EFB2_00845 at 867.486 kb on - strand, within EFB2_00845 at 867.537 kb on + strand, within EFB2_00845 at 867.598 kb on + strand, within EFB2_00845 at 867.598 kb on + strand, within EFB2_00845 at 867.598 kb on + strand, within EFB2_00845 at 867.599 kb on - strand, within EFB2_00845 at 867.599 kb on - strand, within EFB2_00845 at 867.599 kb on - strand, within EFB2_00845 at 867.599 kb on - strand, within EFB2_00845 at 867.599 kb on - strand, within EFB2_00845 at 867.599 kb on - strand, within EFB2_00845 at 867.599 kb on - strand, within EFB2_00845 at 867.599 kb on - strand, within EFB2_00845 at 867.599 kb on - strand, within EFB2_00845 at 867.599 kb on - strand, within EFB2_00845 at 867.602 kb on + strand, within EFB2_00845 at 867.602 kb on + strand, within EFB2_00845 at 867.602 kb on + strand, within EFB2_00845 at 867.602 kb on + strand, within EFB2_00845 at 867.602 kb on + strand, within EFB2_00845 at 867.603 kb on - strand, within EFB2_00845 at 867.603 kb on - strand, within EFB2_00845 at 867.603 kb on - strand, within EFB2_00845 at 867.603 kb on - strand, within EFB2_00845 at 867.603 kb on - strand, within EFB2_00845 at 867.603 kb on - strand, within EFB2_00845 at 867.603 kb on - strand, within EFB2_00845 at 867.603 kb on - strand, within EFB2_00845 at 867.603 kb on - strand, within EFB2_00845 at 867.603 kb on - strand, within EFB2_00845 at 867.603 kb on - strand, within EFB2_00845 at 867.622 kb on + strand, within EFB2_00845 at 867.622 kb on + strand, within EFB2_00845 at 867.622 kb on + strand, within EFB2_00845 at 867.622 kb on + strand, within EFB2_00845 at 867.622 kb on + strand, within EFB2_00845 at 867.622 kb on + strand, within EFB2_00845 at 867.622 kb on + strand, within EFB2_00845 at 867.622 kb on + strand, within EFB2_00845 at 867.622 kb on + strand, within EFB2_00845 at 867.622 kb on + strand, within EFB2_00845 at 867.622 kb on + strand, within EFB2_00845 at 867.622 kb on + strand, within EFB2_00845 at 867.623 kb on - strand, within EFB2_00845 at 867.623 kb on - strand, within EFB2_00845 at 867.623 kb on - strand, within EFB2_00845 at 867.623 kb on - strand, within EFB2_00845 at 867.623 kb on - strand, within EFB2_00845 at 867.623 kb on - strand, within EFB2_00845 at 867.623 kb on - strand, within EFB2_00845 at 867.623 kb on - strand, within EFB2_00845 at 867.623 kb on - strand, within EFB2_00845 at 867.935 kb on + strand, within EFB2_00845 at 867.936 kb on - strand, within EFB2_00845 at 867.936 kb on - strand, within EFB2_00845 at 867.944 kb on + strand, within EFB2_00845 at 867.944 kb on + strand, within EFB2_00845 at 867.945 kb on - strand, within EFB2_00845 at 867.945 kb on - strand, within EFB2_00845 at 868.007 kb on - strand, within EFB2_00845 at 868.034 kb on - strand, within EFB2_00845 at 868.075 kb on + strand, within EFB2_00845 at 868.075 kb on + strand, within EFB2_00845 at 868.076 kb on - strand, within EFB2_00845 at 868.076 kb on - strand, within EFB2_00845 at 868.076 kb on - strand, within EFB2_00845 at 868.076 kb on - strand, within EFB2_00845 at 868.076 kb on - strand, within EFB2_00845 at 868.076 kb on - strand, within EFB2_00845 at 868.076 kb on - strand, within EFB2_00845 at 868.090 kb on + strand, within EFB2_00845 at 868.091 kb on - strand, within EFB2_00845 at 868.091 kb on - strand, within EFB2_00845 at 868.091 kb on - strand, within EFB2_00845 at 868.108 kb on + strand, within EFB2_00845 at 868.108 kb on + strand, within EFB2_00845 at 868.108 kb on + strand, within EFB2_00845 at 868.108 kb on + strand, within EFB2_00845 at 868.108 kb on + strand, within EFB2_00845 at 868.108 kb on + strand, within EFB2_00845 at 868.108 kb on + strand, within EFB2_00845 at 868.108 kb on + strand, within EFB2_00845 at 868.108 kb on + strand, within EFB2_00845 at 868.108 kb on + strand, within EFB2_00845 at 868.108 kb on + strand, within EFB2_00845 at 868.108 kb on + strand, within EFB2_00845 at 868.109 kb on - strand, within EFB2_00845 at 868.109 kb on - strand, within EFB2_00845 at 868.109 kb on - strand, within EFB2_00845 at 868.109 kb on - strand, within EFB2_00845 at 868.109 kb on - strand, within EFB2_00845 at 868.109 kb on - strand, within EFB2_00845 at 868.109 kb on - strand, within EFB2_00845 at 868.204 kb on + strand, within EFB2_00845 at 868.245 kb on + strand, within EFB2_00845 at 868.245 kb on + strand, within EFB2_00845 at 868.246 kb on - strand, within EFB2_00845 at 868.246 kb on - strand, within EFB2_00845 at 868.246 kb on - strand, within EFB2_00845 at 868.264 kb on + strand, within EFB2_00845 at 868.277 kb on - strand, within EFB2_00845 at 868.282 kb on + strand, within EFB2_00845 at 868.282 kb on + strand, within EFB2_00845 at 868.282 kb on + strand, within EFB2_00845 at 868.282 kb on + strand, within EFB2_00845 at 868.351 kb on + strand, within EFB2_00845 at 868.351 kb on + strand, within EFB2_00845 at 868.352 kb on - strand, within EFB2_00845 at 868.352 kb on - strand, within EFB2_00845 at 868.352 kb on - strand, within EFB2_00845 at 868.352 kb on - strand, within EFB2_00845 at 868.352 kb on - strand, within EFB2_00845 at 868.352 kb on - strand, within EFB2_00845 at 868.352 kb on - strand, within EFB2_00845 at 868.359 kb on + strand, within EFB2_00845 at 868.359 kb on + strand, within EFB2_00845 at 868.360 kb on - strand, within EFB2_00845 at 868.360 kb on - strand, within EFB2_00845 at 868.372 kb on + strand, within EFB2_00845 at 868.372 kb on + strand, within EFB2_00845 at 868.372 kb on + strand, within EFB2_00845 at 868.372 kb on + strand, within EFB2_00845 at 868.372 kb on + strand, within EFB2_00845 at 868.373 kb on - strand, within EFB2_00845 at 868.373 kb on - strand, within EFB2_00845 at 868.373 kb on - strand, within EFB2_00845 at 868.373 kb on - strand, within EFB2_00845 at 868.461 kb on + strand, within EFB2_00845 at 868.462 kb on - strand, within EFB2_00845 at 868.566 kb on + strand, within EFB2_00845 at 868.579 kb on + strand, within EFB2_00845 at 868.580 kb on - strand, within EFB2_00845 at 868.595 kb on - strand, within EFB2_00845 at 868.613 kb on - strand, within EFB2_00845 at 868.680 kb on + strand, within EFB2_00845 at 868.886 kb on - strand, within EFB2_00845 at 868.957 kb on + strand at 868.988 kb on + strand at 868.988 kb on + strand at 868.988 kb on + strand at 868.988 kb on + strand at 868.988 kb on + strand at 868.988 kb on + strand at 868.988 kb on + strand at 868.988 kb on + strand at 868.988 kb on + strand at 868.988 kb on + strand at 868.988 kb on + strand at 868.988 kb on + strand at 868.988 kb on + strand at 868.988 kb on + strand at 868.988 kb on + strand at 868.988 kb on + strand at 868.988 kb on + strand at 868.989 kb on - strand at 868.989 kb on - strand at 868.989 kb on - strand at 868.989 kb on - strand at 868.989 kb on - strand at 868.989 kb on - strand at 868.989 kb on - strand at 868.989 kb on - strand at 868.989 kb on - strand at 868.989 kb on - strand at 868.990 kb on + strand at 868.990 kb on + strand at 868.990 kb on + strand at 868.990 kb on + strand at 868.990 kb on + strand at 868.990 kb on + strand at 868.990 kb on + strand at 868.990 kb on + strand at 868.991 kb on - strand at 868.991 kb on - strand at 868.991 kb on - strand at 868.991 kb on - strand at 868.991 kb on - strand at 868.991 kb on - strand at 868.991 kb on - strand at 868.991 kb on - strand at 868.991 kb on - strand at 868.994 kb on + strand at 868.994 kb on + strand at 868.994 kb on + strand at 868.994 kb on + strand at 868.994 kb on + strand at 868.994 kb on + strand at 868.994 kb on + strand at 868.994 kb on + strand at 868.994 kb on + strand at 868.994 kb on + strand at 868.994 kb on + strand at 868.994 kb on + strand at 868.994 kb on + strand at 868.994 kb on + strand at 868.994 kb on + strand at 868.994 kb on + strand at 868.994 kb on + strand at 868.994 kb on + strand at 868.994 kb on + strand at 868.994 kb on + strand at 868.994 kb on + strand at 868.994 kb on + strand at 868.994 kb on + strand at 868.994 kb on + strand at 868.994 kb on + strand at 868.994 kb on + strand at 868.995 kb on - strand at 868.995 kb on - strand at 868.995 kb on - strand at 868.995 kb on - strand at 868.995 kb on - strand at 868.995 kb on - strand at 868.995 kb on - strand at 868.995 kb on - strand at 868.995 kb on - strand at 868.995 kb on - strand at 868.995 kb on - strand at 868.995 kb on - strand at 868.995 kb on - strand at 868.995 kb on - strand at 868.995 kb on - strand at 868.995 kb on - strand at 868.995 kb on - strand at 868.995 kb on - strand at 868.995 kb on - strand at 868.995 kb on - strand at 868.995 kb on - strand at 868.995 kb on - strand at 868.995 kb on - strand at 868.995 kb on - strand at 869.034 kb on + strand at 869.034 kb on + strand at 869.034 kb on + strand at 869.034 kb on + strand at 869.035 kb on - strand at 869.035 kb on - strand at 869.035 kb on - strand at 869.035 kb on - strand at 869.035 kb on - strand at 869.035 kb on - strand at 869.088 kb on + strand at 869.100 kb on + strand at 869.100 kb on + strand at 869.100 kb on + strand at 869.100 kb on + strand at 869.100 kb on + strand at 869.100 kb on + strand at 869.100 kb on + strand at 869.100 kb on + strand at 869.101 kb on - strand at 869.101 kb on - strand at 869.101 kb on - strand at 869.101 kb on - strand at 869.144 kb on + strand at 869.144 kb on + strand at 869.144 kb on + strand at 869.144 kb on + strand at 869.144 kb on + strand at 869.144 kb on + strand at 869.145 kb on - strand at 869.145 kb on - strand at 869.145 kb on - strand at 869.145 kb on - strand at 869.145 kb on - strand at 869.145 kb on - strand at 869.145 kb on - strand at 869.145 kb on - strand at 869.182 kb on + strand at 869.183 kb on - strand at 869.202 kb on + strand at 869.202 kb on + strand at 869.203 kb on - strand at 869.279 kb on + strand at 869.279 kb on + strand at 869.279 kb on + strand at 869.280 kb on - strand at 869.280 kb on - strand at 869.280 kb on - strand at 869.280 kb on - strand at 869.280 kb on - strand at 869.280 kb on - strand at 869.280 kb on - strand at 869.305 kb on - strand, within EFB2_00846 at 869.597 kb on + strand, within EFB2_00846 at 869.597 kb on + strand, within EFB2_00846 at 869.597 kb on + strand, within EFB2_00846 at 869.597 kb on + strand, within EFB2_00846 at 869.597 kb on + strand, within EFB2_00846 at 869.597 kb on + strand, within EFB2_00846 at 869.597 kb on + strand, within EFB2_00846 at 869.597 kb on + strand, within EFB2_00846 at 869.597 kb on + strand, within EFB2_00846 at 869.597 kb on + strand, within EFB2_00846 at 869.597 kb on + strand, within EFB2_00846 at 869.597 kb on + strand, within EFB2_00846 at 869.597 kb on + strand, within EFB2_00846 at 869.597 kb on + strand, within EFB2_00846 at 869.597 kb on + strand, within EFB2_00846 at 869.597 kb on + strand, within EFB2_00846 at 869.597 kb on + strand, within EFB2_00846 at 869.597 kb on + strand, within EFB2_00846 at 869.597 kb on + strand, within EFB2_00846 at 869.597 kb on + strand, within EFB2_00846 at 869.597 kb on + strand, within EFB2_00846 at 869.597 kb on + strand, within EFB2_00846 at 869.597 kb on + strand, within EFB2_00846 at 869.598 kb on - strand, within EFB2_00846 at 869.598 kb on - strand, within EFB2_00846 at 869.598 kb on - strand, within EFB2_00846 at 869.598 kb on - strand, within EFB2_00846 at 869.598 kb on - strand, within EFB2_00846 at 869.598 kb on - strand, within EFB2_00846 at 869.598 kb on - strand, within EFB2_00846 at 869.598 kb on - strand, within EFB2_00846 at 869.598 kb on - strand, within EFB2_00846 at 869.598 kb on - strand, within EFB2_00846 at 869.598 kb on - strand, within EFB2_00846 at 869.598 kb on - strand, within EFB2_00846 at 869.598 kb on - strand, within EFB2_00846 at 869.598 kb on - strand, within EFB2_00846 at 869.598 kb on - strand, within EFB2_00846 at 869.598 kb on - strand, within EFB2_00846 at 869.598 kb on - strand, within EFB2_00846 at 869.598 kb on - strand, within EFB2_00846 at 869.598 kb on - strand, within EFB2_00846 at 869.642 kb on + strand, within EFB2_00846 at 869.649 kb on + strand, within EFB2_00846 at 869.650 kb on - strand, within EFB2_00846 at 869.706 kb on + strand, within EFB2_00846 at 869.707 kb on - strand, within EFB2_00846 at 869.747 kb on + strand, within EFB2_00846 at 869.748 kb on - strand, within EFB2_00846 at 869.748 kb on - strand, within EFB2_00846 at 869.748 kb on - strand, within EFB2_00846 at 869.748 kb on - strand, within EFB2_00846 at 869.748 kb on - strand, within EFB2_00846 at 869.748 kb on - strand, within EFB2_00846 at 869.837 kb on + strand, within EFB2_00846 at 869.838 kb on - strand, within EFB2_00846 at 869.838 kb on - strand, within EFB2_00846 at 869.873 kb on + strand, within EFB2_00846 at 869.873 kb on + strand, within EFB2_00846 at 869.938 kb on + strand, within EFB2_00846 at 869.938 kb on + strand, within EFB2_00846 at 869.938 kb on + strand, within EFB2_00846 at 869.938 kb on + strand, within EFB2_00846 at 869.938 kb on + strand, within EFB2_00846 at 869.939 kb on - strand, within EFB2_00846 at 869.939 kb on - strand, within EFB2_00846 at 869.939 kb on - strand, within EFB2_00846 at 869.939 kb on - strand, within EFB2_00846 at 869.973 kb on + strand, within EFB2_00846 at 869.974 kb on - strand, within EFB2_00846 at 870.004 kb on + strand, within EFB2_00846 at 870.004 kb on + strand, within EFB2_00846 at 870.004 kb on + strand, within EFB2_00846 at 870.004 kb on + strand, within EFB2_00846 at 870.004 kb on + strand, within EFB2_00846 at 870.004 kb on + strand, within EFB2_00846 at 870.004 kb on + strand, within EFB2_00846 at 870.005 kb on - strand, within EFB2_00846 at 870.005 kb on - strand, within EFB2_00846 at 870.005 kb on - strand, within EFB2_00846 at 870.005 kb on - strand, within EFB2_00846 at 870.005 kb on - strand, within EFB2_00846 at 870.005 kb on - strand, within EFB2_00846 at 870.005 kb on - strand, within EFB2_00846 at 870.005 kb on - strand, within EFB2_00846 at 870.005 kb on - strand, within EFB2_00846 at 870.005 kb on - strand, within EFB2_00846 at 870.005 kb on - strand, within EFB2_00846 at 870.005 kb on - strand, within EFB2_00846 at 870.005 kb on - strand, within EFB2_00846 at 870.005 kb on - strand, within EFB2_00846 at 870.005 kb on - strand, within EFB2_00846 at 870.005 kb on - strand, within EFB2_00846 at 870.005 kb on - strand, within EFB2_00846
Per-strain Table
Position Strand Gene LocusTag Fraction BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2) remove 866,081 + +0.8 866,082 - -1.2 866,082 - +0.3 866,118 + +0.1 866,119 - -4.4 866,174 + +0.0 866,234 + +1.8 866,237 + -3.1 866,238 - -0.2 866,256 + -0.9 866,257 - +0.6 866,293 - EFB2_00844 0.11 -1.7 866,294 + EFB2_00844 0.11 -0.3 866,318 + EFB2_00844 0.14 -2.8 866,368 + EFB2_00844 0.20 +0.1 866,369 - EFB2_00844 0.20 +1.0 866,397 + EFB2_00844 0.23 +0.5 866,397 + EFB2_00844 0.23 -2.8 866,397 + EFB2_00844 0.23 +0.2 866,397 + EFB2_00844 0.23 -0.1 866,420 - EFB2_00844 0.26 -0.9 866,459 + EFB2_00844 0.30 +1.0 866,459 + EFB2_00844 0.30 -0.9 866,459 + EFB2_00844 0.30 -1.0 866,460 - EFB2_00844 0.31 +0.1 866,460 - EFB2_00844 0.31 +1.0 866,460 - EFB2_00844 0.31 +0.6 866,535 + EFB2_00844 0.40 -3.6 866,535 + EFB2_00844 0.40 +1.8 866,535 + EFB2_00844 0.40 -0.5 866,535 + EFB2_00844 0.40 -0.5 866,535 + EFB2_00844 0.40 +1.5 866,535 + EFB2_00844 0.40 +0.5 866,535 + EFB2_00844 0.40 -2.2 866,535 + EFB2_00844 0.40 +1.8 866,535 + EFB2_00844 0.40 -0.0 866,535 + EFB2_00844 0.40 -0.9 866,536 - EFB2_00844 0.40 -0.4 866,536 - EFB2_00844 0.40 -0.1 866,536 - EFB2_00844 0.40 -0.1 866,536 - EFB2_00844 0.40 +0.3 866,536 - EFB2_00844 0.40 +1.0 866,536 - EFB2_00844 0.40 -1.0 866,611 - EFB2_00844 0.49 -0.1 866,792 + EFB2_00844 0.70 -1.1 866,792 + EFB2_00844 0.70 +1.2 866,793 - EFB2_00844 0.70 +0.1 866,796 + EFB2_00844 0.70 +0.2 866,796 + EFB2_00844 0.70 +0.4 866,796 + EFB2_00844 0.70 +0.0 866,796 + EFB2_00844 0.70 +0.9 866,796 + EFB2_00844 0.70 -1.7 866,796 + EFB2_00844 0.70 -0.5 866,796 + EFB2_00844 0.70 +0.0 866,796 + EFB2_00844 0.70 -0.7 866,796 + EFB2_00844 0.70 -0.5 866,796 + EFB2_00844 0.70 +0.7 866,796 + EFB2_00844 0.70 -1.4 866,796 + EFB2_00844 0.70 +1.0 866,796 + EFB2_00844 0.70 -1.7 866,796 + EFB2_00844 0.70 +2.4 866,796 + EFB2_00844 0.70 +0.6 866,796 + EFB2_00844 0.70 +1.0 866,796 + EFB2_00844 0.70 +1.7 866,796 + EFB2_00844 0.70 -1.6 866,796 + EFB2_00844 0.70 -0.4 866,796 + EFB2_00844 0.70 +1.2 866,796 + EFB2_00844 0.70 -0.2 866,797 - EFB2_00844 0.71 +1.4 866,797 - EFB2_00844 0.71 +0.5 866,797 - EFB2_00844 0.71 -1.8 866,797 - EFB2_00844 0.71 -1.4 866,797 - EFB2_00844 0.71 +0.4 866,797 - EFB2_00844 0.71 +0.1 866,797 - EFB2_00844 0.71 -1.0 866,797 - EFB2_00844 0.71 -0.5 866,797 - EFB2_00844 0.71 +0.2 866,797 - EFB2_00844 0.71 -0.2 866,797 - EFB2_00844 0.71 +0.5 866,797 - EFB2_00844 0.71 +1.0 866,797 - EFB2_00844 0.71 -0.3 866,797 - EFB2_00844 0.71 -2.1 866,797 - EFB2_00844 0.71 -1.1 866,797 - EFB2_00844 0.71 +1.1 866,798 + EFB2_00844 0.71 -0.5 866,798 + EFB2_00844 0.71 +0.6 866,798 + EFB2_00844 0.71 -0.2 866,799 - EFB2_00844 0.71 +1.2 866,799 - EFB2_00844 0.71 +0.1 866,807 + EFB2_00844 0.72 -2.2 866,807 + EFB2_00844 0.72 +0.4 866,807 + EFB2_00844 0.72 -0.2 866,808 - EFB2_00844 0.72 +0.9 866,808 - EFB2_00844 0.72 -2.3 866,808 - EFB2_00844 0.72 +0.7 866,808 - EFB2_00844 0.72 -0.5 866,808 - EFB2_00844 0.72 -1.0 866,808 - EFB2_00844 0.72 +0.5 866,808 - EFB2_00844 0.72 +0.1 866,808 - EFB2_00844 0.72 -0.2 866,819 + EFB2_00844 0.73 -0.1 866,819 + EFB2_00844 0.73 -0.9 866,820 - EFB2_00844 0.73 +0.5 866,820 - EFB2_00844 0.73 -0.1 866,889 - EFB2_00844 0.81 +0.9 866,914 + EFB2_00844 0.84 -1.1 866,968 + -0.7 866,968 + +0.2 866,968 + -0.7 866,968 + -1.8 866,968 + +1.9 866,969 - +0.6 866,969 - +1.3 866,969 - +0.6 866,969 - +1.4 866,969 - +0.2 866,969 - -0.6 866,969 - -3.1 866,969 - -0.4 866,969 - +0.6 866,969 - -0.8 866,993 + -0.2 866,993 + -0.0 866,994 - -3.7 866,994 - +0.4 866,994 - -0.5 867,001 + -0.4 867,001 + +2.0 867,001 + +0.1 867,002 - -0.1 867,052 + +1.9 867,052 + +0.7 867,052 + +1.2 867,052 + -2.1 867,053 - +0.3 867,088 + +0.3 867,088 + -1.7 867,088 + -1.2 867,088 + +0.4 867,088 + -3.3 867,089 - -0.3 867,089 - +1.0 867,089 - -0.1 867,089 - +0.7 867,089 - -1.0 867,089 - +0.6 867,089 - -0.2 867,089 - +0.2 867,089 - +1.0 867,089 - +1.8 867,098 + -0.4 867,100 + -0.6 867,100 + +0.5 867,100 + +0.1 867,100 + -2.2 867,100 + +0.4 867,100 + +0.8 867,100 + +0.2 867,100 + +0.2 867,100 + -0.1 867,100 + -1.6 867,100 + -0.3 867,101 - -2.8 867,101 - +2.5 867,101 - -3.0 867,101 - +0.2 867,101 - -0.6 867,101 - +0.6 867,101 - +1.1 867,101 - -0.5 867,101 - -0.6 867,101 - +0.4 867,101 - +1.6 867,109 + +1.1 867,109 + +1.0 867,110 - -1.7 867,110 - +0.8 867,110 - +0.1 867,110 - +0.2 867,145 - -3.4 867,175 + +0.9 867,175 + -1.8 867,175 + +2.5 867,175 + -1.0 867,175 + -2.3 867,175 + +0.3 867,175 + -0.5 867,175 + +1.1 867,175 + +0.8 867,175 + +0.0 867,175 + -0.0 867,175 + +0.5 867,175 + -0.1 867,175 + +0.0 867,175 + +0.0 867,176 - +1.6 867,176 - +1.4 867,176 - -0.6 867,176 - +0.8 867,176 - +0.9 867,176 - +0.6 867,176 - -1.6 867,176 - -0.1 867,176 - -1.0 867,176 - +1.7 867,176 - +0.7 867,176 - +1.7 867,176 - -0.1 867,176 - +1.9 867,226 + -1.1 867,226 + +0.7 867,227 - +0.0 867,227 - +2.2 867,269 - -0.0 867,269 - +0.3 867,271 + +1.3 867,271 + -0.3 867,271 + +0.4 867,272 - +0.8 867,272 - +0.4 867,283 + EFB2_00845 0.10 -0.9 867,284 - EFB2_00845 0.10 -0.2 867,284 - EFB2_00845 0.10 -0.2 867,347 + EFB2_00845 0.13 -0.3 867,347 + EFB2_00845 0.13 -0.6 867,350 + EFB2_00845 0.13 -0.5 867,350 + EFB2_00845 0.13 -0.5 867,350 + EFB2_00845 0.13 +0.8 867,350 + EFB2_00845 0.13 +0.2 867,357 + EFB2_00845 0.14 -0.7 867,357 + EFB2_00845 0.14 -3.6 867,358 - EFB2_00845 0.14 +1.6 867,358 - EFB2_00845 0.14 +0.1 867,386 + EFB2_00845 0.15 -1.9 867,387 - EFB2_00845 0.15 +0.8 867,387 - EFB2_00845 0.15 -0.0 867,387 - EFB2_00845 0.15 +0.5 867,396 + EFB2_00845 0.16 -0.3 867,485 + EFB2_00845 0.20 -0.6 867,485 + EFB2_00845 0.20 +0.5 867,485 + EFB2_00845 0.20 -0.4 867,485 + EFB2_00845 0.20 -0.7 867,485 + EFB2_00845 0.20 -2.0 867,486 - EFB2_00845 0.20 +0.5 867,486 - EFB2_00845 0.20 -0.4 867,486 - EFB2_00845 0.20 -2.0 867,486 - EFB2_00845 0.20 -0.8 867,486 - EFB2_00845 0.20 +0.1 867,486 - EFB2_00845 0.20 -1.6 867,486 - EFB2_00845 0.20 +0.6 867,537 + EFB2_00845 0.22 -0.3 867,598 + EFB2_00845 0.25 -3.7 867,598 + EFB2_00845 0.25 +1.4 867,598 + EFB2_00845 0.25 -0.1 867,599 - EFB2_00845 0.25 -0.2 867,599 - EFB2_00845 0.25 -1.2 867,599 - EFB2_00845 0.25 +1.4 867,599 - EFB2_00845 0.25 +1.4 867,599 - EFB2_00845 0.25 +1.2 867,599 - EFB2_00845 0.25 +1.0 867,599 - EFB2_00845 0.25 -2.7 867,599 - EFB2_00845 0.25 +1.6 867,599 - EFB2_00845 0.25 -0.4 867,599 - EFB2_00845 0.25 +0.2 867,602 + EFB2_00845 0.26 -1.9 867,602 + EFB2_00845 0.26 -1.9 867,602 + EFB2_00845 0.26 -0.4 867,602 + EFB2_00845 0.26 -2.3 867,602 + EFB2_00845 0.26 +0.4 867,603 - EFB2_00845 0.26 -0.0 867,603 - EFB2_00845 0.26 -0.1 867,603 - EFB2_00845 0.26 +0.8 867,603 - EFB2_00845 0.26 +0.4 867,603 - EFB2_00845 0.26 +0.9 867,603 - EFB2_00845 0.26 -0.9 867,603 - EFB2_00845 0.26 -1.9 867,603 - EFB2_00845 0.26 +0.4 867,603 - EFB2_00845 0.26 -0.2 867,603 - EFB2_00845 0.26 +1.1 867,603 - EFB2_00845 0.26 +0.6 867,622 + EFB2_00845 0.27 +1.4 867,622 + EFB2_00845 0.27 -1.4 867,622 + EFB2_00845 0.27 -3.2 867,622 + EFB2_00845 0.27 -1.2 867,622 + EFB2_00845 0.27 -1.1 867,622 + EFB2_00845 0.27 +1.6 867,622 + EFB2_00845 0.27 +1.5 867,622 + EFB2_00845 0.27 +1.2 867,622 + EFB2_00845 0.27 +0.8 867,622 + EFB2_00845 0.27 -0.9 867,622 + EFB2_00845 0.27 -2.4 867,622 + EFB2_00845 0.27 -0.4 867,623 - EFB2_00845 0.27 -1.2 867,623 - EFB2_00845 0.27 -2.3 867,623 - EFB2_00845 0.27 +1.4 867,623 - EFB2_00845 0.27 +0.5 867,623 - EFB2_00845 0.27 -1.1 867,623 - EFB2_00845 0.27 +0.4 867,623 - EFB2_00845 0.27 -1.2 867,623 - EFB2_00845 0.27 +1.1 867,623 - EFB2_00845 0.27 -0.2 867,935 + EFB2_00845 0.42 -1.5 867,936 - EFB2_00845 0.42 +0.1 867,936 - EFB2_00845 0.42 -0.1 867,944 + EFB2_00845 0.42 +1.1 867,944 + EFB2_00845 0.42 -0.8 867,945 - EFB2_00845 0.42 +2.4 867,945 - EFB2_00845 0.42 +0.6 868,007 - EFB2_00845 0.45 +0.8 868,034 - EFB2_00845 0.47 +1.0 868,075 + EFB2_00845 0.49 -0.1 868,075 + EFB2_00845 0.49 -0.3 868,076 - EFB2_00845 0.49 +0.4 868,076 - EFB2_00845 0.49 +0.1 868,076 - EFB2_00845 0.49 +1.6 868,076 - EFB2_00845 0.49 +1.1 868,076 - EFB2_00845 0.49 +0.6 868,076 - EFB2_00845 0.49 -0.9 868,076 - EFB2_00845 0.49 +0.1 868,090 + EFB2_00845 0.49 -1.1 868,091 - EFB2_00845 0.49 -0.2 868,091 - EFB2_00845 0.49 +2.1 868,091 - EFB2_00845 0.49 +0.1 868,108 + EFB2_00845 0.50 +2.0 868,108 + EFB2_00845 0.50 -1.2 868,108 + EFB2_00845 0.50 -1.2 868,108 + EFB2_00845 0.50 +0.5 868,108 + EFB2_00845 0.50 +1.3 868,108 + EFB2_00845 0.50 -0.9 868,108 + EFB2_00845 0.50 +1.6 868,108 + EFB2_00845 0.50 -0.7 868,108 + EFB2_00845 0.50 +0.8 868,108 + EFB2_00845 0.50 +0.6 868,108 + EFB2_00845 0.50 -0.5 868,108 + EFB2_00845 0.50 +1.8 868,109 - EFB2_00845 0.50 +0.4 868,109 - EFB2_00845 0.50 +1.4 868,109 - EFB2_00845 0.50 +0.9 868,109 - EFB2_00845 0.50 +0.1 868,109 - EFB2_00845 0.50 -1.0 868,109 - EFB2_00845 0.50 +0.3 868,109 - EFB2_00845 0.50 -0.5 868,204 + EFB2_00845 0.55 -0.6 868,245 + EFB2_00845 0.57 +0.7 868,245 + EFB2_00845 0.57 +0.6 868,246 - EFB2_00845 0.57 +1.9 868,246 - EFB2_00845 0.57 -0.8 868,246 - EFB2_00845 0.57 +0.8 868,264 + EFB2_00845 0.58 +1.0 868,277 - EFB2_00845 0.58 -2.2 868,282 + EFB2_00845 0.59 +1.0 868,282 + EFB2_00845 0.59 +0.1 868,282 + EFB2_00845 0.59 +0.4 868,282 + EFB2_00845 0.59 +0.4 868,351 + EFB2_00845 0.62 +1.7 868,351 + EFB2_00845 0.62 +0.4 868,352 - EFB2_00845 0.62 +0.5 868,352 - EFB2_00845 0.62 +0.9 868,352 - EFB2_00845 0.62 -1.5 868,352 - EFB2_00845 0.62 +1.4 868,352 - EFB2_00845 0.62 +0.5 868,352 - EFB2_00845 0.62 +0.9 868,352 - EFB2_00845 0.62 +1.3 868,359 + EFB2_00845 0.62 -2.4 868,359 + EFB2_00845 0.62 +2.0 868,360 - EFB2_00845 0.62 +0.7 868,360 - EFB2_00845 0.62 -2.2 868,372 + EFB2_00845 0.63 -0.3 868,372 + EFB2_00845 0.63 -0.3 868,372 + EFB2_00845 0.63 +0.1 868,372 + EFB2_00845 0.63 +0.5 868,372 + EFB2_00845 0.63 +0.2 868,373 - 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EFB2_00846 0.47 +1.2 869,873 + EFB2_00846 0.49 +2.1 869,873 + EFB2_00846 0.49 -0.7 869,938 + EFB2_00846 0.54 -1.6 869,938 + EFB2_00846 0.54 +0.3 869,938 + EFB2_00846 0.54 +1.0 869,938 + EFB2_00846 0.54 +0.2 869,938 + EFB2_00846 0.54 -1.1 869,939 - EFB2_00846 0.54 -0.1 869,939 - EFB2_00846 0.54 +0.9 869,939 - EFB2_00846 0.54 -0.5 869,939 - EFB2_00846 0.54 -0.1 869,973 + EFB2_00846 0.56 -0.3 869,974 - EFB2_00846 0.56 +1.4 870,004 + EFB2_00846 0.58 -0.7 870,004 + EFB2_00846 0.58 +1.3 870,004 + EFB2_00846 0.58 -1.2 870,004 + EFB2_00846 0.58 -0.9 870,004 + EFB2_00846 0.58 +2.4 870,004 + EFB2_00846 0.58 +0.8 870,004 + EFB2_00846 0.58 +0.1 870,005 - EFB2_00846 0.58 -0.3 870,005 - EFB2_00846 0.58 +1.4 870,005 - EFB2_00846 0.58 +1.3 870,005 - EFB2_00846 0.58 -0.6 870,005 - EFB2_00846 0.58 +0.1 870,005 - EFB2_00846 0.58 +0.8 870,005 - EFB2_00846 0.58 +0.6 870,005 - EFB2_00846 0.58 -0.4 870,005 - EFB2_00846 0.58 -3.1 870,005 - EFB2_00846 0.58 +0.4 870,005 - EFB2_00846 0.58 -3.4 870,005 - EFB2_00846 0.58 +0.1 870,005 - EFB2_00846 0.58 -0.7 870,005 - EFB2_00846 0.58 +1.1 870,005 - EFB2_00846 0.58 -1.3 870,005 - EFB2_00846 0.58 -2.6 870,005 - EFB2_00846 0.58 +0.2
Or see this region's nucleotide sequence