Strain Fitness in Escherichia fergusonii Becca around EFB2_00486

Experiment: BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
509,972	+		EFB2_00485	0.69	-0.1
509,972	+		EFB2_00485	0.69	-0.0
509,973	-		EFB2_00485	0.69	+0.6
509,973	-		EFB2_00485	0.69	+0.5
510,013	-		EFB2_00485	0.71	-0.1
510,013	-		EFB2_00485	0.71	-0.5
510,018	-		EFB2_00485	0.71	+2.9
510,027	+		EFB2_00485	0.71	-1.7
510,027	+		EFB2_00485	0.71	-2.4
510,027	+		EFB2_00485	0.71	-0.7
510,028	-		EFB2_00485	0.71	-1.6
510,036	+		EFB2_00485	0.72	+1.5
510,037	-		EFB2_00485	0.72	+0.2
510,098	+		EFB2_00485	0.74	+0.4
510,098	+		EFB2_00485	0.74	-0.5
510,098	+		EFB2_00485	0.74	+0.4
510,098	+		EFB2_00485	0.74	+0.4
510,098	+		EFB2_00485	0.74	-3.3
510,098	+		EFB2_00485	0.74	+0.5
510,098	+		EFB2_00485	0.74	-1.7
510,099	-		EFB2_00485	0.74	-0.6
510,099	-		EFB2_00485	0.74	-1.0
510,099	-		EFB2_00485	0.74	+0.3
510,099	-		EFB2_00485	0.74	+0.5
510,099	-		EFB2_00485	0.74	-0.6
510,101	+		EFB2_00485	0.74	+0.8
510,101	+		EFB2_00485	0.74	+0.3
510,101	+		EFB2_00485	0.74	+0.6
510,102	-		EFB2_00485	0.74	-2.0
510,102	-		EFB2_00485	0.74	+0.4
510,102	-		EFB2_00485	0.74	+1.0
510,102	-		EFB2_00485	0.74	+1.0
510,102	-		EFB2_00485	0.74	-0.7
510,125	+		EFB2_00485	0.75	+1.1
510,142	+		EFB2_00485	0.76	+2.3
510,142	+		EFB2_00485	0.76	+0.6
510,142	+		EFB2_00485	0.76	-0.3
510,142	+		EFB2_00485	0.76	+0.4
510,142	+		EFB2_00485	0.76	-1.4
510,142	+		EFB2_00485	0.76	+2.1
510,142	+		EFB2_00485	0.76	+0.3
510,142	+		EFB2_00485	0.76	+1.0
510,142	+		EFB2_00485	0.76	+1.1
510,142	+		EFB2_00485	0.76	+0.8
510,142	+		EFB2_00485	0.76	+0.4
510,142	+		EFB2_00485	0.76	-0.7
510,142	+		EFB2_00485	0.76	-0.6
510,142	+		EFB2_00485	0.76	+0.7
510,142	+		EFB2_00485	0.76	+0.2
510,142	+		EFB2_00485	0.76	-0.5
510,142	+		EFB2_00485	0.76	-0.2
510,143	-		EFB2_00485	0.76	+1.4
510,143	-		EFB2_00485	0.76	-0.9
510,143	-		EFB2_00485	0.76	-1.5
510,143	-		EFB2_00485	0.76	+2.6
510,143	-		EFB2_00485	0.76	-1.1
510,143	-		EFB2_00485	0.76	+0.5
510,143	-		EFB2_00485	0.76	-1.0
510,143	-		EFB2_00485	0.76	-2.0
510,143	-		EFB2_00485	0.76	+0.9
510,143	-		EFB2_00485	0.76	+0.3
510,143	-		EFB2_00485	0.76	+1.3
510,143	-		EFB2_00485	0.76	+0.3
510,143	-		EFB2_00485	0.76	-0.4
510,153	+		EFB2_00485	0.76	+1.4
510,153	+		EFB2_00485	0.76	+0.4
510,153	+		EFB2_00485	0.76	+0.0
510,153	+		EFB2_00485	0.76	+1.5
510,153	+		EFB2_00485	0.76	+0.2
510,153	+		EFB2_00485	0.76	-0.9
510,153	+		EFB2_00485	0.76	+0.7
510,154	-		EFB2_00485	0.76	-2.2
510,154	-		EFB2_00485	0.76	+1.3
510,154	-		EFB2_00485	0.76	+0.3
510,154	-		EFB2_00485	0.76	-0.1
510,154	-		EFB2_00485	0.76	-2.0
510,154	-		EFB2_00485	0.76	-2.2
510,154	-		EFB2_00485	0.76	+0.7
510,156	+		EFB2_00485	0.76	-2.1
510,156	+		EFB2_00485	0.76	-0.6
510,156	+		EFB2_00485	0.76	-0.2
510,156	+		EFB2_00485	0.76	-0.9
510,156	+		EFB2_00485	0.76	-0.9
510,156	+		EFB2_00485	0.76	+0.1
510,157	-		EFB2_00485	0.76	+0.7
510,157	-		EFB2_00485	0.76	-1.4
510,157	-		EFB2_00485	0.76	-0.2
510,157	-		EFB2_00485	0.76	+0.9
510,157	-		EFB2_00485	0.76	-0.3
510,157	-		EFB2_00485	0.76	+0.9
510,157	-		EFB2_00485	0.76	+0.6
510,157	-		EFB2_00485	0.76	-0.5
510,157	-		EFB2_00485	0.76	+1.3
510,233	+		EFB2_00485	0.79	-0.4
510,233	+		EFB2_00485	0.79	+1.1
510,233	+		EFB2_00485	0.79	+0.6
510,233	+		EFB2_00485	0.79	-0.9
510,233	+		EFB2_00485	0.79	+0.9
510,233	+		EFB2_00485	0.79	-0.5
510,233	+		EFB2_00485	0.79	+0.9
510,233	+		EFB2_00485	0.79	+0.1
510,233	+		EFB2_00485	0.79	+1.2
510,233	+		EFB2_00485	0.79	-0.4
510,233	+		EFB2_00485	0.79	-0.1
510,233	+		EFB2_00485	0.79	+1.7
510,233	+		EFB2_00485	0.79	+1.0
510,233	+		EFB2_00485	0.79	-0.3
510,233	+		EFB2_00485	0.79	+0.9
510,233	+		EFB2_00485	0.79	+0.6
510,233	+		EFB2_00485	0.79	+0.3
510,234	-		EFB2_00485	0.79	+0.0
510,234	-		EFB2_00485	0.79	+1.5
510,234	-		EFB2_00485	0.79	+0.1
510,234	-		EFB2_00485	0.79	+0.5
510,234	-		EFB2_00485	0.79	-1.5
510,234	-		EFB2_00485	0.79	-0.0
510,234	-		EFB2_00485	0.79	-1.9
510,234	-		EFB2_00485	0.79	+0.6
510,234	-		EFB2_00485	0.79	+0.0
510,234	-		EFB2_00485	0.79	-0.2
510,234	-		EFB2_00485	0.79	-0.9
510,234	-		EFB2_00485	0.79	+0.3
510,234	-		EFB2_00485	0.79	-0.1
510,234	-		EFB2_00485	0.79	-0.2
510,234	-		EFB2_00485	0.79	+0.5
510,234	-		EFB2_00485	0.79	-3.4
510,234	-		EFB2_00485	0.79	-1.8
510,234	-		EFB2_00485	0.79	+0.8
510,234	-		EFB2_00485	0.79	+0.6
510,234	-		EFB2_00485	0.79	+1.4
510,234	-		EFB2_00485	0.79	+1.9
510,234	-		EFB2_00485	0.79	+2.4
510,234	-		EFB2_00485	0.79	+0.8
510,246	-		EFB2_00485	0.79	-2.6
510,246	-		EFB2_00485	0.79	+1.1
510,272	+		EFB2_00485	0.80	+0.7
510,272	+		EFB2_00485	0.80	+0.6
510,272	+		EFB2_00485	0.80	-0.6
510,272	+		EFB2_00485	0.80	+1.4
510,273	-		EFB2_00485	0.80	+0.9
510,273	-		EFB2_00485	0.80	-0.8
510,296	+		EFB2_00485	0.81	-0.8
510,296	+		EFB2_00485	0.81	+0.6
510,296	+		EFB2_00485	0.81	+0.3
510,296	+		EFB2_00485	0.81	+0.0
510,296	+		EFB2_00485	0.81	-2.6
510,296	+		EFB2_00485	0.81	-2.7
510,296	+		EFB2_00485	0.81	-0.1
510,296	+		EFB2_00485	0.81	-1.0
510,297	-		EFB2_00485	0.81	+0.9
510,297	-		EFB2_00485	0.81	+1.9
510,297	-		EFB2_00485	0.81	+0.3
510,297	-		EFB2_00485	0.81	+1.2
510,297	-		EFB2_00485	0.81	-3.6
510,297	-		EFB2_00485	0.81	+2.5
510,297	-		EFB2_00485	0.81	-1.3
510,302	+		EFB2_00485	0.82	+1.3
510,302	+		EFB2_00485	0.82	+0.6
510,302	+		EFB2_00485	0.82	+1.5
510,302	+		EFB2_00485	0.82	+1.2
510,302	+		EFB2_00485	0.82	-0.7
510,302	+		EFB2_00485	0.82	+0.5
510,302	+		EFB2_00485	0.82	+0.0
510,302	+		EFB2_00485	0.82	+0.1
510,303	-		EFB2_00485	0.82	+0.9
510,303	-		EFB2_00485	0.82	-1.7
510,303	-		EFB2_00485	0.82	+0.6
510,303	-		EFB2_00485	0.82	+0.1
510,303	-		EFB2_00485	0.82	+0.3
510,303	-		EFB2_00485	0.82	+0.9
510,303	-		EFB2_00485	0.82	+1.9
510,303	-		EFB2_00485	0.82	-0.8
510,303	-		EFB2_00485	0.82	-0.2
510,309	+		EFB2_00485	0.82	-0.9
510,309	+		EFB2_00485	0.82	-2.3
510,309	+		EFB2_00485	0.82	-2.3
510,309	+		EFB2_00485	0.82	+0.6
510,310	-		EFB2_00485	0.82	-2.7
510,310	-		EFB2_00485	0.82	-0.1
510,310	-		EFB2_00485	0.82	-0.1
510,310	-		EFB2_00485	0.82	-2.2
510,310	-		EFB2_00485	0.82	-0.6
510,310	-		EFB2_00485	0.82	+0.5
510,311	+		EFB2_00485	0.82	-0.2
510,311	+		EFB2_00485	0.82	-3.1
510,311	+		EFB2_00485	0.82	-0.6
510,311	+		EFB2_00485	0.82	-0.2
510,311	+		EFB2_00485	0.82	+0.5
510,311	+		EFB2_00485	0.82	+0.4
510,311	+		EFB2_00485	0.82	-1.4
510,311	+		EFB2_00485	0.82	-0.3
510,311	+		EFB2_00485	0.82	-1.7
510,311	+		EFB2_00485	0.82	-2.5
510,311	+		EFB2_00485	0.82	-0.1
510,311	+		EFB2_00485	0.82	+1.2
510,311	+		EFB2_00485	0.82	-1.3
510,311	+		EFB2_00485	0.82	+0.1
510,311	+		EFB2_00485	0.82	-0.1
510,311	+		EFB2_00485	0.82	+1.2
510,311	+		EFB2_00485	0.82	-1.0
510,311	+		EFB2_00485	0.82	+0.5
510,311	+		EFB2_00485	0.82	-2.5
510,312	-		EFB2_00485	0.82	-0.0
510,312	-		EFB2_00485	0.82	+0.1
510,312	-		EFB2_00485	0.82	-0.1
510,312	-		EFB2_00485	0.82	-0.5
510,312	-		EFB2_00485	0.82	+2.1
510,312	-		EFB2_00485	0.82	+0.1
510,312	-		EFB2_00485	0.82	+0.9
510,312	-		EFB2_00485	0.82	+0.9
510,312	-		EFB2_00485	0.82	+0.8
510,312	-		EFB2_00485	0.82	-2.0
510,312	-		EFB2_00485	0.82	+1.3
510,312	-		EFB2_00485	0.82	-0.4
510,312	-		EFB2_00485	0.82	+2.1
510,312	-		EFB2_00485	0.82	+1.6
510,312	-		EFB2_00485	0.82	-0.5
510,312	-		EFB2_00485	0.82	+1.5
510,312	-		EFB2_00485	0.82	+0.1
510,312	-		EFB2_00485	0.82	-2.4
510,312	-		EFB2_00485	0.82	-1.7
510,312	-		EFB2_00485	0.82	-1.9
510,312	-		EFB2_00485	0.82	+0.9
510,312	-		EFB2_00485	0.82	-0.6
510,420	+		EFB2_00485	0.86	+0.4
510,420	+		EFB2_00485	0.86	-2.9
510,420	+		EFB2_00485	0.86	-0.5
510,421	-		EFB2_00485	0.86	+0.0
510,421	-		EFB2_00485	0.86	+2.7
510,431	+		EFB2_00485	0.86	-0.0
510,431	+		EFB2_00485	0.86	+0.4
510,431	+		EFB2_00485	0.86	+0.7
510,431	+		EFB2_00485	0.86	-0.1
510,431	+		EFB2_00485	0.86	+1.7
510,432	-		EFB2_00485	0.86	-0.6
510,432	-		EFB2_00485	0.86	-0.0
510,432	-		EFB2_00485	0.86	-0.4
510,432	-		EFB2_00485	0.86	+1.2
510,432	-		EFB2_00485	0.86	-0.8
510,473	+		EFB2_00485	0.88	-0.7
510,473	+		EFB2_00485	0.88	+1.1
510,473	+		EFB2_00485	0.88	-1.2
510,473	+		EFB2_00485	0.88	-2.2
510,474	-		EFB2_00485	0.88	-1.4
510,474	-		EFB2_00485	0.88	+0.5
510,474	-		EFB2_00485	0.88	+0.1
510,474	-		EFB2_00485	0.88	-2.5
510,474	-		EFB2_00485	0.88	-0.2
510,533	+				-2.0
510,534	-				-0.3
510,534	-				+0.5
510,534	-				+1.4
510,534	-				+0.7
510,534	-				-1.1
510,612	+				-1.3
510,612	+				+0.1
510,612	+				-3.4
510,612	+				+2.6
510,612	+				+0.4
510,612	+				+2.5
510,612	+				+0.3
510,612	+				+0.6
510,612	+				+1.4
510,612	+				-1.8
510,612	+				-0.4
510,612	+				+1.7
510,612	+				+1.0
510,612	+				+0.3
510,613	-				+1.2
510,613	-				+1.1
510,613	-				+0.5
510,613	-				+0.8
510,613	-				+0.1
510,613	-				-1.1
510,613	-				+0.3
510,613	-				-2.2
510,613	-				+0.7
510,613	-				-0.5
510,613	-				+0.3
510,613	-				+0.3
510,613	-				+1.6
510,613	-				+0.3
510,613	-				+0.2
510,613	-				-0.0
510,656	+				-1.9
510,656	+				-1.3
510,656	+				-0.7
510,657	-				-0.3
510,657	-				-0.8
510,665	+				-2.2
510,665	+				+0.5
510,666	-				+0.5
510,674	+				-1.2
510,674	+				-2.4
510,675	-				-2.0
510,711	-				-1.8
510,740	+				-1.3
510,741	-				+1.0
510,759	+				+0.2
510,759	+				+1.1
510,760	-				-0.9
510,760	-				-1.8
510,760	-				+0.9
510,767	+				+1.1
510,768	-				+0.1
510,788	+				-1.0
510,788	+				+0.1
510,789	-				-0.3
510,789	-				+0.3
510,791	+				+0.5
510,791	+				+1.2
510,791	+				-0.8
510,791	+				-2.2
510,792	-				-1.3
510,792	-				+0.4
510,792	-				-1.2
510,792	-				+0.1
510,792	-				+0.5
510,798	+				-0.2
510,798	+				+0.8
510,798	+				+0.2
510,798	+				+0.3
510,798	+				+0.1
510,798	+				+1.5
510,799	-				-0.1
510,799	-				+0.4
510,799	-				+0.6
510,799	-				+1.0
510,799	-				-0.2
510,799	-				-1.0
510,799	-				+0.1
510,799	-				+0.5
510,813	+				-0.3
510,849	+				-0.4
510,867	-				+0.8
510,867	-				+3.2
510,867	-				+0.6
510,878	+				+0.6
510,878	+				-0.3
510,878	+				-0.4
510,878	+				+1.7
510,878	+				+1.5
510,878	+				+0.2
510,879	-				+0.7
510,879	-				+1.3
510,879	-				+0.3
510,879	-				+1.5
510,879	-				+0.9
510,879	-				+0.0
510,879	-				-2.9
510,879	-				+0.0
510,885	-				-0.7
510,895	+				+0.5
510,895	+				+0.6
510,913	+				-0.5
510,922	+				+3.1
510,922	+				+0.6
510,923	-				+0.5
510,954	+				+0.2
510,954	+				+0.4
510,955	-				+0.8
510,955	-				-3.0
510,955	-				-2.7
510,955	-				+2.0
510,955	-				+0.5
510,955	-				-0.0
510,955	-				+1.1
510,956	+				+1.6
510,956	+				-0.1
510,968	+				-1.3
510,968	+				-0.7
510,968	+				+0.4
510,968	+				+0.5
510,968	+				-1.1
510,968	+				+1.6
510,969	-				+0.1
510,969	-				+1.0
510,969	-				-2.3
510,969	-				-1.8
510,969	-				+0.8
510,969	-				-0.5
510,969	-				-0.6
510,969	-				-0.7
510,969	-				+0.8
510,969	-				-0.7
510,969	-				-1.9
510,972	+				+1.1
510,972	+				-1.0
510,972	+				+1.1
510,972	+				-2.2
510,972	+				-1.7
510,972	+				-1.4
510,972	+				+0.1
510,972	+				+0.3
510,972	+				+0.6
510,972	+				+1.4
510,972	+				-0.4
510,972	+				-0.2
510,972	+				-0.2
510,972	+				+0.4
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