Experiment: Brucella 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_05586 and BACOVA_05587 overlap by 14 nucleotides BACOVA_05587 and BACOVA_05588 are separated by 23 nucleotides BACOVA_05588 and BACOVA_05589 overlap by 4 nucleotides BACOVA_05589 and BACOVA_05590 overlap by 12 nucleotides BACOVA_05590 and BACOVA_05591 are separated by 57 nucleotides BACOVA_05591 and BACOVA_05592 overlap by 129 nucleotides BACOVA_05592 and BACOVA_05593 are separated by 193 nucleotides
BACOVA_05586: BACOVA_05586 - toxin-antitoxin system, toxin component, RelE family, at 1,105,818 to 1,106,111
_05586
BACOVA_05587: BACOVA_05587 - DNA-binding helix-turn-helix protein, at 1,106,098 to 1,106,481
_05587
BACOVA_05588: BACOVA_05588 - hypothetical protein, at 1,106,505 to 1,106,594
_05588
BACOVA_05589: BACOVA_05589 - hypothetical protein, at 1,106,591 to 1,106,749
_05589
BACOVA_05590: BACOVA_05590 - VirE N-terminal domain protein, at 1,106,738 to 1,108,855
_05590
BACOVA_05591: BACOVA_05591 - hypothetical protein, at 1,108,913 to 1,109,071
_05591
BACOVA_05592: BACOVA_05592 - hypothetical protein, at 1,108,943 to 1,109,173
_05592
BACOVA_05593: BACOVA_05593 - putative DNA-binding protein, at 1,109,367 to 1,109,870
_05593
Position (kb)
1106
1107
1108
1109 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1105.762 kb on - strand at 1105.804 kb on + strand at 1105.812 kb on + strand at 1105.826 kb on - strand at 1105.952 kb on + strand, within BACOVA_05586 at 1105.952 kb on + strand, within BACOVA_05586 at 1105.969 kb on + strand, within BACOVA_05586 at 1105.970 kb on - strand, within BACOVA_05586 at 1105.983 kb on + strand, within BACOVA_05586 at 1106.006 kb on + strand, within BACOVA_05586 at 1106.042 kb on - strand, within BACOVA_05586 at 1106.054 kb on + strand, within BACOVA_05586 at 1106.054 kb on + strand, within BACOVA_05586 at 1106.082 kb on + strand at 1106.087 kb on + strand at 1106.087 kb on + strand at 1106.092 kb on + strand at 1106.316 kb on + strand, within BACOVA_05587 at 1106.317 kb on - strand, within BACOVA_05587 at 1106.320 kb on + strand, within BACOVA_05587 at 1106.320 kb on + strand, within BACOVA_05587 at 1106.321 kb on - strand, within BACOVA_05587 at 1106.390 kb on - strand, within BACOVA_05587 at 1106.460 kb on + strand at 1106.479 kb on + strand at 1106.479 kb on + strand at 1106.527 kb on + strand, within BACOVA_05588 at 1106.655 kb on + strand, within BACOVA_05589 at 1106.745 kb on + strand at 1106.748 kb on - strand at 1106.748 kb on - strand at 1106.779 kb on + strand at 1106.779 kb on + strand at 1106.877 kb on + strand at 1106.884 kb on - strand at 1106.966 kb on - strand, within BACOVA_05590 at 1107.005 kb on + strand, within BACOVA_05590 at 1107.084 kb on + strand, within BACOVA_05590 at 1107.084 kb on + strand, within BACOVA_05590 at 1107.100 kb on - strand, within BACOVA_05590 at 1107.111 kb on + strand, within BACOVA_05590 at 1107.111 kb on + strand, within BACOVA_05590 at 1107.223 kb on + strand, within BACOVA_05590 at 1107.224 kb on - strand, within BACOVA_05590 at 1107.301 kb on + strand, within BACOVA_05590 at 1107.362 kb on + strand, within BACOVA_05590 at 1107.363 kb on - strand, within BACOVA_05590 at 1107.397 kb on + strand, within BACOVA_05590 at 1107.398 kb on - strand, within BACOVA_05590 at 1107.449 kb on - strand, within BACOVA_05590 at 1107.454 kb on + strand, within BACOVA_05590 at 1107.454 kb on + strand, within BACOVA_05590 at 1107.549 kb on + strand, within BACOVA_05590 at 1107.549 kb on + strand, within BACOVA_05590 at 1107.586 kb on + strand, within BACOVA_05590 at 1107.587 kb on - strand, within BACOVA_05590 at 1107.589 kb on + strand, within BACOVA_05590 at 1107.590 kb on - strand, within BACOVA_05590 at 1107.618 kb on + strand, within BACOVA_05590 at 1107.618 kb on + strand, within BACOVA_05590 at 1107.654 kb on + strand, within BACOVA_05590 at 1107.673 kb on - strand, within BACOVA_05590 at 1107.729 kb on + strand, within BACOVA_05590 at 1107.838 kb on + strand, within BACOVA_05590 at 1107.855 kb on + strand, within BACOVA_05590 at 1108.016 kb on - strand, within BACOVA_05590 at 1108.057 kb on - strand, within BACOVA_05590 at 1108.118 kb on - strand, within BACOVA_05590 at 1108.167 kb on + strand, within BACOVA_05590 at 1108.168 kb on - strand, within BACOVA_05590 at 1108.312 kb on - strand, within BACOVA_05590 at 1108.349 kb on - strand, within BACOVA_05590 at 1108.481 kb on + strand, within BACOVA_05590 at 1108.487 kb on + strand, within BACOVA_05590 at 1108.487 kb on + strand, within BACOVA_05590 at 1108.488 kb on - strand, within BACOVA_05590 at 1108.692 kb on - strand at 1108.945 kb on - strand at 1108.960 kb on - strand at 1108.964 kb on + strand at 1108.965 kb on - strand at 1109.110 kb on - strand, within BACOVA_05592 at 1109.226 kb on + strand at 1109.258 kb on - strand at 1109.363 kb on + strand at 1109.381 kb on - strand at 1109.386 kb on - strand at 1109.393 kb on - strand at 1109.439 kb on + strand, within BACOVA_05593 at 1109.553 kb on + strand, within BACOVA_05593 at 1109.735 kb on + strand, within BACOVA_05593 at 1109.740 kb on - strand, within BACOVA_05593 at 1109.750 kb on - strand, within BACOVA_05593
Per-strain Table
Position Strand Gene LocusTag Fraction Brucella 1 x (C) complex media remove 1,105,762 - -0.2 1,105,804 + -0.1 1,105,812 + +1.0 1,105,826 - +0.5 1,105,952 + BACOVA_05586 0.46 -2.3 1,105,952 + BACOVA_05586 0.46 +0.4 1,105,969 + BACOVA_05586 0.51 -0.2 1,105,970 - BACOVA_05586 0.52 -0.6 1,105,983 + BACOVA_05586 0.56 -0.3 1,106,006 + BACOVA_05586 0.64 +0.1 1,106,042 - BACOVA_05586 0.76 -1.1 1,106,054 + BACOVA_05586 0.80 +0.7 1,106,054 + BACOVA_05586 0.80 -0.4 1,106,082 + +0.5 1,106,087 + -0.5 1,106,087 + -1.5 1,106,092 + -0.1 1,106,316 + BACOVA_05587 0.57 -2.4 1,106,317 - BACOVA_05587 0.57 -3.2 1,106,320 + BACOVA_05587 0.58 -0.3 1,106,320 + BACOVA_05587 0.58 +0.1 1,106,321 - BACOVA_05587 0.58 -1.1 1,106,390 - BACOVA_05587 0.76 -3.3 1,106,460 + -2.5 1,106,479 + +0.4 1,106,479 + -0.7 1,106,527 + BACOVA_05588 0.24 -1.2 1,106,655 + BACOVA_05589 0.40 +0.5 1,106,745 + -0.7 1,106,748 - -2.7 1,106,748 - -0.1 1,106,779 + -0.3 1,106,779 + -1.9 1,106,877 + -0.4 1,106,884 - +0.1 1,106,966 - BACOVA_05590 0.11 -0.0 1,107,005 + BACOVA_05590 0.13 -0.7 1,107,084 + BACOVA_05590 0.16 +0.1 1,107,084 + BACOVA_05590 0.16 +0.0 1,107,100 - BACOVA_05590 0.17 -0.2 1,107,111 + BACOVA_05590 0.18 +0.8 1,107,111 + BACOVA_05590 0.18 +0.9 1,107,223 + BACOVA_05590 0.23 +0.7 1,107,224 - BACOVA_05590 0.23 +1.6 1,107,301 + BACOVA_05590 0.27 -0.3 1,107,362 + BACOVA_05590 0.29 +0.4 1,107,363 - BACOVA_05590 0.30 +1.1 1,107,397 + BACOVA_05590 0.31 +1.3 1,107,398 - BACOVA_05590 0.31 +0.6 1,107,449 - BACOVA_05590 0.34 +0.2 1,107,454 + BACOVA_05590 0.34 +0.1 1,107,454 + BACOVA_05590 0.34 -1.7 1,107,549 + BACOVA_05590 0.38 -0.2 1,107,549 + BACOVA_05590 0.38 +1.2 1,107,586 + BACOVA_05590 0.40 +0.6 1,107,587 - BACOVA_05590 0.40 -1.0 1,107,589 + BACOVA_05590 0.40 +1.4 1,107,590 - BACOVA_05590 0.40 -0.5 1,107,618 + BACOVA_05590 0.42 +0.2 1,107,618 + BACOVA_05590 0.42 -0.2 1,107,654 + BACOVA_05590 0.43 -1.8 1,107,673 - BACOVA_05590 0.44 +0.8 1,107,729 + BACOVA_05590 0.47 -0.8 1,107,838 + BACOVA_05590 0.52 +0.8 1,107,855 + BACOVA_05590 0.53 -2.4 1,108,016 - BACOVA_05590 0.60 +0.3 1,108,057 - BACOVA_05590 0.62 -2.2 1,108,118 - BACOVA_05590 0.65 -0.5 1,108,167 + BACOVA_05590 0.67 -1.0 1,108,168 - BACOVA_05590 0.68 +0.9 1,108,312 - BACOVA_05590 0.74 -0.6 1,108,349 - BACOVA_05590 0.76 -0.1 1,108,481 + BACOVA_05590 0.82 +0.1 1,108,487 + BACOVA_05590 0.83 +0.1 1,108,487 + BACOVA_05590 0.83 +1.0 1,108,488 - BACOVA_05590 0.83 -0.4 1,108,692 - +0.6 1,108,945 - -1.0 1,108,960 - -0.2 1,108,964 + -1.9 1,108,965 - -0.4 1,109,110 - BACOVA_05592 0.72 -0.8 1,109,226 + +1.4 1,109,258 - -0.8 1,109,363 + +0.1 1,109,381 - +0.1 1,109,386 - +1.3 1,109,393 - -0.6 1,109,439 + BACOVA_05593 0.14 -0.8 1,109,553 + BACOVA_05593 0.37 -0.5 1,109,735 + BACOVA_05593 0.73 +0.4 1,109,740 - BACOVA_05593 0.74 +0.7 1,109,750 - BACOVA_05593 0.76 -0.4
Or see this region's nucleotide sequence