Experiment: Brucella 1 x (C) complex media
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03694 and BACOVA_03695 are separated by 48 nucleotides BACOVA_03695 and BACOVA_03696 are separated by 133 nucleotides BACOVA_03696 and BACOVA_03697 are separated by 159 nucleotides
BACOVA_03694: BACOVA_03694 - MATE efflux family protein, at 24,319 to 25,650
_03694
BACOVA_03695: BACOVA_03695 - peptidase, S9A/B/C family, catalytic domain protein, at 25,699 to 27,801
_03695
BACOVA_03696: BACOVA_03696 - hypothetical protein, at 27,935 to 28,441
_03696
BACOVA_03697: BACOVA_03697 - hypothetical protein, at 28,601 to 29,479
_03697
Position (kb) 25
26
27
28 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 24.705 kb on + strand, within BACOVA_03694 at 24.706 kb on - strand, within BACOVA_03694 at 24.742 kb on - strand, within BACOVA_03694 at 24.770 kb on + strand, within BACOVA_03694 at 24.808 kb on - strand, within BACOVA_03694 at 24.833 kb on + strand, within BACOVA_03694 at 24.833 kb on + strand, within BACOVA_03694 at 24.841 kb on + strand, within BACOVA_03694 at 24.841 kb on + strand, within BACOVA_03694 at 24.842 kb on - strand, within BACOVA_03694 at 24.946 kb on + strand, within BACOVA_03694 at 24.947 kb on - strand, within BACOVA_03694 at 24.947 kb on - strand, within BACOVA_03694 at 24.947 kb on - strand, within BACOVA_03694 at 24.947 kb on - strand, within BACOVA_03694 at 24.988 kb on - strand, within BACOVA_03694 at 24.990 kb on - strand, within BACOVA_03694 at 25.245 kb on - strand, within BACOVA_03694 at 25.251 kb on + strand, within BACOVA_03694 at 25.254 kb on + strand, within BACOVA_03694 at 25.255 kb on - strand, within BACOVA_03694 at 25.255 kb on - strand, within BACOVA_03694 at 25.280 kb on - strand, within BACOVA_03694 at 25.280 kb on - strand, within BACOVA_03694 at 25.281 kb on + strand, within BACOVA_03694 at 25.281 kb on + strand, within BACOVA_03694 at 25.283 kb on + strand, within BACOVA_03694 at 25.283 kb on + strand, within BACOVA_03694 at 25.338 kb on + strand, within BACOVA_03694 at 25.338 kb on + strand, within BACOVA_03694 at 25.339 kb on - strand, within BACOVA_03694 at 25.343 kb on - strand, within BACOVA_03694 at 25.343 kb on - strand, within BACOVA_03694 at 25.345 kb on - strand, within BACOVA_03694 at 25.351 kb on - strand, within BACOVA_03694 at 25.385 kb on + strand, within BACOVA_03694 at 25.386 kb on - strand, within BACOVA_03694 at 25.405 kb on + strand, within BACOVA_03694 at 25.406 kb on - strand, within BACOVA_03694 at 25.406 kb on - strand, within BACOVA_03694 at 25.493 kb on + strand, within BACOVA_03694 at 25.493 kb on + strand, within BACOVA_03694 at 25.501 kb on - strand, within BACOVA_03694 at 25.513 kb on + strand, within BACOVA_03694 at 25.513 kb on + strand, within BACOVA_03694 at 25.522 kb on + strand at 25.578 kb on - strand at 25.580 kb on - strand at 25.606 kb on + strand at 25.613 kb on - strand at 25.613 kb on - strand at 25.648 kb on + strand at 25.696 kb on + strand at 25.698 kb on + strand at 25.715 kb on + strand at 25.719 kb on + strand at 25.719 kb on + strand at 25.719 kb on + strand at 25.742 kb on + strand at 25.806 kb on + strand at 25.809 kb on + strand at 25.904 kb on - strand at 25.905 kb on + strand at 25.915 kb on + strand, within BACOVA_03695 at 25.919 kb on - strand, within BACOVA_03695 at 26.032 kb on - strand, within BACOVA_03695 at 26.061 kb on + strand, within BACOVA_03695 at 26.087 kb on - strand, within BACOVA_03695 at 26.132 kb on - strand, within BACOVA_03695 at 26.132 kb on - strand, within BACOVA_03695 at 26.132 kb on - strand, within BACOVA_03695 at 26.143 kb on - strand, within BACOVA_03695 at 26.143 kb on - strand, within BACOVA_03695 at 26.338 kb on - strand, within BACOVA_03695 at 26.381 kb on - strand, within BACOVA_03695 at 26.381 kb on - strand, within BACOVA_03695 at 26.509 kb on + strand, within BACOVA_03695 at 26.509 kb on + strand, within BACOVA_03695 at 26.509 kb on + strand, within BACOVA_03695 at 26.509 kb on + strand, within BACOVA_03695 at 26.509 kb on + strand, within BACOVA_03695 at 26.602 kb on + strand, within BACOVA_03695 at 26.603 kb on - strand, within BACOVA_03695 at 26.603 kb on - strand, within BACOVA_03695 at 26.749 kb on - strand, within BACOVA_03695 at 26.771 kb on + strand, within BACOVA_03695 at 26.771 kb on + strand, within BACOVA_03695 at 26.772 kb on - strand, within BACOVA_03695 at 26.832 kb on + strand, within BACOVA_03695 at 26.846 kb on - strand, within BACOVA_03695 at 26.851 kb on + strand, within BACOVA_03695 at 26.878 kb on - strand, within BACOVA_03695 at 26.924 kb on - strand, within BACOVA_03695 at 26.981 kb on - strand, within BACOVA_03695 at 26.981 kb on - strand, within BACOVA_03695 at 27.036 kb on + strand, within BACOVA_03695 at 27.102 kb on - strand, within BACOVA_03695 at 27.181 kb on - strand, within BACOVA_03695 at 27.187 kb on + strand, within BACOVA_03695 at 27.187 kb on + strand, within BACOVA_03695 at 27.187 kb on + strand, within BACOVA_03695 at 27.188 kb on - strand, within BACOVA_03695 at 27.322 kb on + strand, within BACOVA_03695 at 27.378 kb on - strand, within BACOVA_03695 at 27.495 kb on + strand, within BACOVA_03695 at 27.540 kb on + strand, within BACOVA_03695 at 27.540 kb on + strand, within BACOVA_03695 at 27.541 kb on - strand, within BACOVA_03695 at 27.563 kb on + strand, within BACOVA_03695 at 27.564 kb on - strand, within BACOVA_03695 at 27.564 kb on - strand, within BACOVA_03695 at 27.589 kb on - strand, within BACOVA_03695 at 27.589 kb on - strand, within BACOVA_03695 at 27.597 kb on + strand at 27.597 kb on + strand at 27.598 kb on - strand at 27.616 kb on + strand at 27.631 kb on - strand at 27.639 kb on + strand at 27.741 kb on - strand at 27.817 kb on - strand at 27.820 kb on + strand at 27.820 kb on + strand at 27.821 kb on - strand at 27.823 kb on + strand at 27.824 kb on - strand at 27.829 kb on - strand at 27.834 kb on + strand at 27.834 kb on + strand at 27.834 kb on + strand at 27.834 kb on + strand at 27.834 kb on + strand at 27.837 kb on + strand at 27.916 kb on - strand at 27.946 kb on - strand at 27.950 kb on - strand at 27.968 kb on - strand at 27.968 kb on - strand at 27.969 kb on + strand at 27.969 kb on + strand at 27.970 kb on - strand at 27.970 kb on - strand at 27.970 kb on - strand at 27.970 kb on - strand at 27.976 kb on + strand at 27.976 kb on + strand at 27.977 kb on - strand at 27.977 kb on - strand at 28.002 kb on + strand, within BACOVA_03696 at 28.125 kb on - strand, within BACOVA_03696 at 28.153 kb on + strand, within BACOVA_03696 at 28.153 kb on + strand, within BACOVA_03696 at 28.154 kb on - strand, within BACOVA_03696 at 28.154 kb on - strand, within BACOVA_03696 at 28.158 kb on - strand, within BACOVA_03696 at 28.159 kb on + strand, within BACOVA_03696 at 28.162 kb on + strand, within BACOVA_03696 at 28.162 kb on + strand, within BACOVA_03696 at 28.162 kb on + strand, within BACOVA_03696 at 28.163 kb on - strand, within BACOVA_03696 at 28.214 kb on + strand, within BACOVA_03696 at 28.258 kb on - strand, within BACOVA_03696 at 28.262 kb on - strand, within BACOVA_03696 at 28.262 kb on - strand, within BACOVA_03696 at 28.369 kb on + strand, within BACOVA_03696 at 28.457 kb on + strand at 28.461 kb on + strand at 28.467 kb on + strand at 28.472 kb on - strand at 28.477 kb on - strand at 28.508 kb on + strand at 28.530 kb on + strand at 28.530 kb on + strand at 28.530 kb on + strand at 28.584 kb on - strand at 28.590 kb on + strand at 28.590 kb on + strand at 28.594 kb on + strand at 28.594 kb on + strand at 28.594 kb on + strand at 28.595 kb on - strand at 28.599 kb on - strand at 28.638 kb on + strand at 28.735 kb on - strand, within BACOVA_03697 at 28.801 kb on + strand, within BACOVA_03697
Per-strain Table
Position Strand Gene LocusTag Fraction Brucella 1 x (C) complex media remove 24,705 + BACOVA_03694 0.29 +0.7 24,706 - BACOVA_03694 0.29 +0.2 24,742 - BACOVA_03694 0.32 +0.4 24,770 + BACOVA_03694 0.34 -2.2 24,808 - BACOVA_03694 0.37 +0.3 24,833 + BACOVA_03694 0.39 +0.0 24,833 + BACOVA_03694 0.39 +0.1 24,841 + BACOVA_03694 0.39 +0.4 24,841 + BACOVA_03694 0.39 +0.6 24,842 - BACOVA_03694 0.39 -1.4 24,946 + BACOVA_03694 0.47 +0.5 24,947 - BACOVA_03694 0.47 +1.2 24,947 - BACOVA_03694 0.47 +0.7 24,947 - BACOVA_03694 0.47 +0.1 24,947 - BACOVA_03694 0.47 -1.9 24,988 - BACOVA_03694 0.50 -0.7 24,990 - BACOVA_03694 0.50 -0.9 25,245 - BACOVA_03694 0.70 +1.4 25,251 + BACOVA_03694 0.70 +0.3 25,254 + BACOVA_03694 0.70 +0.5 25,255 - BACOVA_03694 0.70 +0.5 25,255 - BACOVA_03694 0.70 -0.6 25,280 - BACOVA_03694 0.72 -0.7 25,280 - BACOVA_03694 0.72 -0.1 25,281 + BACOVA_03694 0.72 +0.6 25,281 + BACOVA_03694 0.72 -0.4 25,283 + BACOVA_03694 0.72 -0.1 25,283 + BACOVA_03694 0.72 +0.9 25,338 + BACOVA_03694 0.77 +0.1 25,338 + BACOVA_03694 0.77 -0.7 25,339 - BACOVA_03694 0.77 +0.4 25,343 - BACOVA_03694 0.77 +0.3 25,343 - BACOVA_03694 0.77 +0.2 25,345 - BACOVA_03694 0.77 -0.7 25,351 - BACOVA_03694 0.77 -1.5 25,385 + BACOVA_03694 0.80 +0.1 25,386 - BACOVA_03694 0.80 -0.7 25,405 + BACOVA_03694 0.82 -0.7 25,406 - BACOVA_03694 0.82 +0.6 25,406 - BACOVA_03694 0.82 -0.1 25,493 + BACOVA_03694 0.88 -0.8 25,493 + BACOVA_03694 0.88 +0.6 25,501 - BACOVA_03694 0.89 +0.6 25,513 + BACOVA_03694 0.90 +0.3 25,513 + BACOVA_03694 0.90 +0.4 25,522 + +0.1 25,578 - -0.5 25,580 - +0.0 25,606 + -1.1 25,613 - -0.4 25,613 - -1.2 25,648 + +0.2 25,696 + +1.0 25,698 + -0.9 25,715 + +0.3 25,719 + -0.3 25,719 + -0.7 25,719 + -0.7 25,742 + +1.6 25,806 + -0.2 25,809 + +0.2 25,904 - +0.8 25,905 + -2.1 25,915 + BACOVA_03695 0.10 -0.7 25,919 - BACOVA_03695 0.10 +0.2 26,032 - BACOVA_03695 0.16 -0.7 26,061 + BACOVA_03695 0.17 +0.9 26,087 - BACOVA_03695 0.18 -1.1 26,132 - BACOVA_03695 0.21 -0.5 26,132 - BACOVA_03695 0.21 -0.7 26,132 - BACOVA_03695 0.21 -0.1 26,143 - BACOVA_03695 0.21 -1.7 26,143 - BACOVA_03695 0.21 -0.3 26,338 - BACOVA_03695 0.30 -0.4 26,381 - BACOVA_03695 0.32 +0.7 26,381 - BACOVA_03695 0.32 -0.7 26,509 + BACOVA_03695 0.39 +0.2 26,509 + BACOVA_03695 0.39 +0.9 26,509 + BACOVA_03695 0.39 -0.1 26,509 + BACOVA_03695 0.39 -0.5 26,509 + BACOVA_03695 0.39 -1.7 26,602 + BACOVA_03695 0.43 -0.4 26,603 - BACOVA_03695 0.43 +0.9 26,603 - BACOVA_03695 0.43 -1.7 26,749 - BACOVA_03695 0.50 -1.6 26,771 + BACOVA_03695 0.51 -0.1 26,771 + BACOVA_03695 0.51 -0.7 26,772 - BACOVA_03695 0.51 +0.3 26,832 + BACOVA_03695 0.54 +0.0 26,846 - BACOVA_03695 0.55 +0.8 26,851 + BACOVA_03695 0.55 -2.1 26,878 - BACOVA_03695 0.56 +0.6 26,924 - BACOVA_03695 0.58 +0.8 26,981 - BACOVA_03695 0.61 +0.8 26,981 - BACOVA_03695 0.61 -0.3 27,036 + BACOVA_03695 0.64 -2.9 27,102 - BACOVA_03695 0.67 -0.6 27,181 - BACOVA_03695 0.70 +0.4 27,187 + BACOVA_03695 0.71 -0.2 27,187 + BACOVA_03695 0.71 -0.1 27,187 + BACOVA_03695 0.71 +0.9 27,188 - BACOVA_03695 0.71 -0.9 27,322 + BACOVA_03695 0.77 +0.2 27,378 - BACOVA_03695 0.80 -2.9 27,495 + BACOVA_03695 0.85 -1.3 27,540 + BACOVA_03695 0.88 -1.4 27,540 + BACOVA_03695 0.88 +0.2 27,541 - BACOVA_03695 0.88 -1.0 27,563 + BACOVA_03695 0.89 +1.3 27,564 - BACOVA_03695 0.89 +1.4 27,564 - BACOVA_03695 0.89 +0.2 27,589 - BACOVA_03695 0.90 +1.6 27,589 - BACOVA_03695 0.90 +0.7 27,597 + +0.0 27,597 + +0.5 27,598 - -0.9 27,616 + +0.5 27,631 - +0.6 27,639 + -1.2 27,741 - +0.8 27,817 - -0.9 27,820 + +0.7 27,820 + -1.0 27,821 - -0.9 27,823 + +0.4 27,824 - +0.9 27,829 - -0.1 27,834 + -1.2 27,834 + -0.9 27,834 + -0.8 27,834 + +0.6 27,834 + -1.5 27,837 + -0.1 27,916 - +1.1 27,946 - -0.7 27,950 - -1.1 27,968 - -0.3 27,968 - -0.2 27,969 + -0.0 27,969 + +0.4 27,970 - +0.4 27,970 - +1.0 27,970 - +0.6 27,970 - +1.4 27,976 + +0.1 27,976 + -0.4 27,977 - -0.2 27,977 - -0.8 28,002 + BACOVA_03696 0.13 -0.6 28,125 - BACOVA_03696 0.37 -0.3 28,153 + BACOVA_03696 0.43 -1.0 28,153 + BACOVA_03696 0.43 -0.1 28,154 - BACOVA_03696 0.43 +0.2 28,154 - BACOVA_03696 0.43 +0.0 28,158 - BACOVA_03696 0.44 -0.3 28,159 + BACOVA_03696 0.44 +0.1 28,162 + BACOVA_03696 0.45 -0.6 28,162 + BACOVA_03696 0.45 -0.4 28,162 + BACOVA_03696 0.45 +0.4 28,163 - BACOVA_03696 0.45 -0.7 28,214 + BACOVA_03696 0.55 +0.8 28,258 - BACOVA_03696 0.64 -1.2 28,262 - BACOVA_03696 0.64 -0.3 28,262 - BACOVA_03696 0.64 +0.1 28,369 + BACOVA_03696 0.86 -1.4 28,457 + -0.1 28,461 + -0.7 28,467 + +0.4 28,472 - +0.1 28,477 - -0.2 28,508 + -0.9 28,530 + +0.6 28,530 + -1.5 28,530 + -0.3 28,584 - -0.4 28,590 + +0.6 28,590 + -0.4 28,594 + +0.7 28,594 + -0.4 28,594 + +0.1 28,595 - -1.3 28,599 - +0.8 28,638 + +1.1 28,735 - BACOVA_03697 0.15 -0.2 28,801 + BACOVA_03697 0.23 -0.5
Or see this region's nucleotide sequence