Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_03564

Experiment: Brucella 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_03563 and BACOVA_03564 are separated by 7 nucleotidesBACOVA_03564 and BACOVA_03565 are separated by 134 nucleotides BACOVA_03563: BACOVA_03563 - hypothetical protein, at 343,431 to 344,816 _03563 BACOVA_03564: BACOVA_03564 - RNA polymerase sigma-70 factor, at 344,824 to 345,333 _03564 BACOVA_03565: BACOVA_03565 - TonB-linked outer membrane protein, SusC/RagA family, at 345,468 to 348,704 _03565 Position (kb) 344 345 346Strain fitness (log2 ratio) -3 -2 -1 0 1at 343.839 kb on - strand, within BACOVA_03563at 343.839 kb on - strand, within BACOVA_03563at 343.840 kb on + strand, within BACOVA_03563at 343.862 kb on - strand, within BACOVA_03563at 343.961 kb on - strand, within BACOVA_03563at 343.975 kb on + strand, within BACOVA_03563at 343.984 kb on + strand, within BACOVA_03563at 344.004 kb on + strand, within BACOVA_03563at 344.005 kb on - strand, within BACOVA_03563at 344.073 kb on + strand, within BACOVA_03563at 344.073 kb on + strand, within BACOVA_03563at 344.074 kb on - strand, within BACOVA_03563at 344.074 kb on - strand, within BACOVA_03563at 344.082 kb on + strand, within BACOVA_03563at 344.082 kb on + strand, within BACOVA_03563at 344.083 kb on - strand, within BACOVA_03563at 344.084 kb on + strand, within BACOVA_03563at 344.084 kb on + strand, within BACOVA_03563at 344.084 kb on + strand, within BACOVA_03563at 344.085 kb on - strand, within BACOVA_03563at 344.085 kb on - strand, within BACOVA_03563at 344.085 kb on - strand, within BACOVA_03563at 344.085 kb on - strand, within BACOVA_03563at 344.085 kb on - strand, within BACOVA_03563at 344.105 kb on + strand, within BACOVA_03563at 344.110 kb on - strand, within BACOVA_03563at 344.110 kb on - strand, within BACOVA_03563at 344.144 kb on + strand, within BACOVA_03563at 344.153 kb on + strand, within BACOVA_03563at 344.185 kb on - strand, within BACOVA_03563at 344.200 kb on - strand, within BACOVA_03563at 344.217 kb on - strand, within BACOVA_03563at 344.221 kb on + strand, within BACOVA_03563at 344.266 kb on + strand, within BACOVA_03563at 344.267 kb on - strand, within BACOVA_03563at 344.271 kb on + strand, within BACOVA_03563at 344.272 kb on - strand, within BACOVA_03563at 344.276 kb on + strand, within BACOVA_03563at 344.276 kb on + strand, within BACOVA_03563at 344.277 kb on - strand, within BACOVA_03563at 344.277 kb on - strand, within BACOVA_03563at 344.292 kb on + strand, within BACOVA_03563at 344.359 kb on - strand, within BACOVA_03563at 344.376 kb on - strand, within BACOVA_03563at 344.396 kb on + strand, within BACOVA_03563at 344.396 kb on + strand, within BACOVA_03563at 344.526 kb on - strand, within BACOVA_03563at 344.526 kb on - strand, within BACOVA_03563at 344.543 kb on + strand, within BACOVA_03563at 344.544 kb on - strand, within BACOVA_03563at 344.662 kb on - strand, within BACOVA_03563at 344.664 kb on + strand, within BACOVA_03563at 344.664 kb on + strand, within BACOVA_03563at 344.665 kb on - strand, within BACOVA_03563at 344.665 kb on - strand, within BACOVA_03563at 344.677 kb on + strand, within BACOVA_03563at 344.677 kb on + strand, within BACOVA_03563at 344.684 kb on + strandat 344.684 kb on + strandat 344.706 kb on + strandat 344.760 kb on + strandat 344.761 kb on - strandat 344.799 kb on + strandat 344.800 kb on - strandat 344.802 kb on + strandat 344.803 kb on - strandat 344.804 kb on + strandat 344.819 kb on + strandat 344.848 kb on - strandat 344.848 kb on - strandat 344.848 kb on - strandat 344.853 kb on - strandat 344.853 kb on - strandat 344.853 kb on - strandat 344.863 kb on + strandat 344.865 kb on + strandat 344.865 kb on + strandat 344.866 kb on - strandat 344.882 kb on + strand, within BACOVA_03564at 344.897 kb on + strand, within BACOVA_03564at 344.902 kb on + strand, within BACOVA_03564at 344.949 kb on - strand, within BACOVA_03564at 344.971 kb on - strand, within BACOVA_03564at 345.040 kb on + strand, within BACOVA_03564at 345.056 kb on - strand, within BACOVA_03564at 345.079 kb on + strand, within BACOVA_03564at 345.082 kb on - strand, within BACOVA_03564at 345.085 kb on + strand, within BACOVA_03564at 345.085 kb on + strand, within BACOVA_03564at 345.085 kb on + strand, within BACOVA_03564at 345.105 kb on + strand, within BACOVA_03564at 345.106 kb on - strand, within BACOVA_03564at 345.193 kb on - strand, within BACOVA_03564at 345.199 kb on + strand, within BACOVA_03564at 345.277 kb on + strand, within BACOVA_03564at 345.313 kb on + strandat 345.316 kb on - strandat 345.334 kb on + strandat 345.334 kb on + strandat 345.334 kb on + strandat 345.353 kb on + strandat 345.354 kb on - strandat 345.354 kb on - strandat 345.439 kb on - strandat 345.446 kb on + strandat 345.447 kb on - strandat 345.490 kb on + strandat 345.491 kb on - strandat 345.491 kb on - strandat 345.494 kb on + strandat 345.495 kb on - strandat 345.495 kb on - strandat 345.495 kb on - strandat 345.499 kb on + strandat 345.518 kb on - strandat 345.618 kb on - strandat 345.618 kb on - strandat 345.693 kb on - strandat 345.714 kb on - strandat 345.714 kb on - strandat 345.725 kb on - strandat 345.755 kb on + strandat 345.781 kb on + strandat 345.806 kb on - strand, within BACOVA_03565at 345.853 kb on + strand, within BACOVA_03565at 345.854 kb on - strand, within BACOVA_03565at 345.990 kb on - strand, within BACOVA_03565at 345.990 kb on - strand, within BACOVA_03565at 345.999 kb on - strand, within BACOVA_03565at 346.039 kb on + strand, within BACOVA_03565at 346.061 kb on + strand, within BACOVA_03565at 346.062 kb on - strand, within BACOVA_03565at 346.062 kb on - strand, within BACOVA_03565at 346.117 kb on + strand, within BACOVA_03565at 346.132 kb on + strand, within BACOVA_03565at 346.132 kb on + strand, within BACOVA_03565at 346.133 kb on - strand, within BACOVA_03565at 346.151 kb on + strand, within BACOVA_03565at 346.169 kb on + strand, within BACOVA_03565at 346.169 kb on + strand, within BACOVA_03565at 346.170 kb on - strand, within BACOVA_03565at 346.173 kb on + strand, within BACOVA_03565at 346.173 kb on + strand, within BACOVA_03565at 346.173 kb on + strand, within BACOVA_03565at 346.173 kb on + strand, within BACOVA_03565at 346.173 kb on + strand, within BACOVA_03565at 346.174 kb on - strand, within BACOVA_03565at 346.174 kb on - strand, within BACOVA_03565at 346.249 kb on - strand, within BACOVA_03565at 346.249 kb on - strand, within BACOVA_03565at 346.250 kb on + strand, within BACOVA_03565at 346.250 kb on + strand, within BACOVA_03565at 346.251 kb on - strand, within BACOVA_03565at 346.251 kb on - strand, within BACOVA_03565

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Per-strain Table

Position Strand Gene LocusTag Fraction Brucella 1 x (C) complex media
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343,839 - BACOVA_03563 0.29 -0.9
343,839 - BACOVA_03563 0.29 +0.6
343,840 + BACOVA_03563 0.30 +0.2
343,862 - BACOVA_03563 0.31 -0.7
343,961 - BACOVA_03563 0.38 +0.6
343,975 + BACOVA_03563 0.39 -1.2
343,984 + BACOVA_03563 0.40 -0.8
344,004 + BACOVA_03563 0.41 +1.7
344,005 - BACOVA_03563 0.41 -0.9
344,073 + BACOVA_03563 0.46 -0.4
344,073 + BACOVA_03563 0.46 -2.0
344,074 - BACOVA_03563 0.46 +0.1
344,074 - BACOVA_03563 0.46 -0.3
344,082 + BACOVA_03563 0.47 -1.7
344,082 + BACOVA_03563 0.47 -0.1
344,083 - BACOVA_03563 0.47 -1.1
344,084 + BACOVA_03563 0.47 +0.0
344,084 + BACOVA_03563 0.47 +0.3
344,084 + BACOVA_03563 0.47 +1.0
344,085 - BACOVA_03563 0.47 -1.3
344,085 - BACOVA_03563 0.47 +0.6
344,085 - BACOVA_03563 0.47 +1.0
344,085 - BACOVA_03563 0.47 +0.6
344,085 - BACOVA_03563 0.47 +0.3
344,105 + BACOVA_03563 0.49 +0.2
344,110 - BACOVA_03563 0.49 -0.1
344,110 - BACOVA_03563 0.49 -0.5
344,144 + BACOVA_03563 0.51 +0.5
344,153 + BACOVA_03563 0.52 -0.4
344,185 - BACOVA_03563 0.54 +0.7
344,200 - BACOVA_03563 0.55 +0.1
344,217 - BACOVA_03563 0.57 -0.2
344,221 + BACOVA_03563 0.57 +0.2
344,266 + BACOVA_03563 0.60 -0.7
344,267 - BACOVA_03563 0.60 -3.4
344,271 + BACOVA_03563 0.61 -0.3
344,272 - BACOVA_03563 0.61 +0.3
344,276 + BACOVA_03563 0.61 +0.1
344,276 + BACOVA_03563 0.61 +0.4
344,277 - BACOVA_03563 0.61 +0.4
344,277 - BACOVA_03563 0.61 +0.2
344,292 + BACOVA_03563 0.62 +0.2
344,359 - BACOVA_03563 0.67 -1.4
344,376 - BACOVA_03563 0.68 +0.6
344,396 + BACOVA_03563 0.70 +0.6
344,396 + BACOVA_03563 0.70 -0.4
344,526 - BACOVA_03563 0.79 +0.2
344,526 - BACOVA_03563 0.79 -1.0
344,543 + BACOVA_03563 0.80 +1.7
344,544 - BACOVA_03563 0.80 +0.7
344,662 - BACOVA_03563 0.89 +0.3
344,664 + BACOVA_03563 0.89 +0.1
344,664 + BACOVA_03563 0.89 +0.2
344,665 - BACOVA_03563 0.89 +0.5
344,665 - BACOVA_03563 0.89 -1.1
344,677 + BACOVA_03563 0.90 -0.1
344,677 + BACOVA_03563 0.90 +0.1
344,684 + -0.7
344,684 + +0.0
344,706 + -1.3
344,760 + +0.1
344,761 - +0.7
344,799 + -0.3
344,800 - -0.2
344,802 + +1.2
344,803 - -0.3
344,804 + +0.3
344,819 + +0.7
344,848 - +0.9
344,848 - -0.8
344,848 - -1.5
344,853 - -0.2
344,853 - +0.6
344,853 - +0.8
344,863 + -0.4
344,865 + +0.5
344,865 + -0.0
344,866 - -0.4
344,882 + BACOVA_03564 0.11 -1.3
344,897 + BACOVA_03564 0.14 -0.6
344,902 + BACOVA_03564 0.15 +0.8
344,949 - BACOVA_03564 0.25 +0.1
344,971 - BACOVA_03564 0.29 -0.7
345,040 + BACOVA_03564 0.42 -0.8
345,056 - BACOVA_03564 0.45 -0.4
345,079 + BACOVA_03564 0.50 -0.1
345,082 - BACOVA_03564 0.51 -0.8
345,085 + BACOVA_03564 0.51 -0.3
345,085 + BACOVA_03564 0.51 -0.9
345,085 + BACOVA_03564 0.51 -0.9
345,105 + BACOVA_03564 0.55 -0.3
345,106 - BACOVA_03564 0.55 -0.9
345,193 - BACOVA_03564 0.72 -0.5
345,199 + BACOVA_03564 0.74 +0.0
345,277 + BACOVA_03564 0.89 +0.1
345,313 + -1.1
345,316 - +0.6
345,334 + +0.1
345,334 + -1.1
345,334 + -1.3
345,353 + +1.1
345,354 - -0.5
345,354 - -1.6
345,439 - -0.4
345,446 + +0.5
345,447 - +0.2
345,490 + -0.9
345,491 - +0.3
345,491 - -0.3
345,494 + -0.5
345,495 - +0.2
345,495 - +0.3
345,495 - +0.0
345,499 + +0.5
345,518 - -0.6
345,618 - +0.4
345,618 - -0.4
345,693 - +0.3
345,714 - +0.2
345,714 - +0.4
345,725 - -0.6
345,755 + -1.1
345,781 + -0.0
345,806 - BACOVA_03565 0.10 +0.4
345,853 + BACOVA_03565 0.12 +0.0
345,854 - BACOVA_03565 0.12 -0.2
345,990 - BACOVA_03565 0.16 -0.0
345,990 - BACOVA_03565 0.16 +0.2
345,999 - BACOVA_03565 0.16 +0.6
346,039 + BACOVA_03565 0.18 +0.9
346,061 + BACOVA_03565 0.18 -0.4
346,062 - BACOVA_03565 0.18 +0.8
346,062 - BACOVA_03565 0.18 +0.4
346,117 + BACOVA_03565 0.20 -0.0
346,132 + BACOVA_03565 0.21 +0.2
346,132 + BACOVA_03565 0.21 +0.3
346,133 - BACOVA_03565 0.21 -0.3
346,151 + BACOVA_03565 0.21 -0.0
346,169 + BACOVA_03565 0.22 -0.2
346,169 + BACOVA_03565 0.22 -0.3
346,170 - BACOVA_03565 0.22 -1.0
346,173 + BACOVA_03565 0.22 -1.7
346,173 + BACOVA_03565 0.22 -0.3
346,173 + BACOVA_03565 0.22 +0.2
346,173 + BACOVA_03565 0.22 -0.7
346,173 + BACOVA_03565 0.22 +0.7
346,174 - BACOVA_03565 0.22 +1.3
346,174 - BACOVA_03565 0.22 +0.1
346,249 - BACOVA_03565 0.24 -0.2
346,249 - BACOVA_03565 0.24 -0.2
346,250 + BACOVA_03565 0.24 -0.3
346,250 + BACOVA_03565 0.24 -1.2
346,251 - BACOVA_03565 0.24 -0.3
346,251 - BACOVA_03565 0.24 +0.2

Or see this region's nucleotide sequence