Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01482

Experiment: Brucella 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01480 and BACOVA_01481 are separated by 8 nucleotidesBACOVA_01481 and BACOVA_01482 are separated by 192 nucleotidesBACOVA_01482 and BACOVA_01483 are separated by 263 nucleotides BACOVA_01480: BACOVA_01480 - transcriptional regulator, effector binding domain protein, at 134,330 to 135,187 _01480 BACOVA_01481: BACOVA_01481 - hypothetical protein, at 135,196 to 135,306 _01481 BACOVA_01482: BACOVA_01482 - hypothetical protein, at 135,499 to 135,723 _01482 BACOVA_01483: BACOVA_01483 - hypothetical protein, at 135,987 to 137,093 _01483 Position (kb) 135 136Strain fitness (log2 ratio) -2 -1 0 1at 134.502 kb on + strand, within BACOVA_01480at 134.580 kb on - strand, within BACOVA_01480at 134.588 kb on + strand, within BACOVA_01480at 134.588 kb on + strand, within BACOVA_01480at 134.588 kb on + strand, within BACOVA_01480at 134.588 kb on + strand, within BACOVA_01480at 134.589 kb on - strand, within BACOVA_01480at 134.589 kb on - strand, within BACOVA_01480at 134.637 kb on + strand, within BACOVA_01480at 134.637 kb on + strand, within BACOVA_01480at 134.638 kb on - strand, within BACOVA_01480at 134.718 kb on + strand, within BACOVA_01480at 134.718 kb on + strand, within BACOVA_01480at 134.733 kb on + strand, within BACOVA_01480at 134.744 kb on - strand, within BACOVA_01480at 134.845 kb on + strand, within BACOVA_01480at 134.855 kb on - strand, within BACOVA_01480at 134.855 kb on - strand, within BACOVA_01480at 134.855 kb on - strand, within BACOVA_01480at 134.861 kb on + strand, within BACOVA_01480at 134.961 kb on + strand, within BACOVA_01480at 135.111 kb on - strandat 135.111 kb on - strandat 135.126 kb on + strandat 135.126 kb on + strandat 135.126 kb on + strandat 135.191 kb on + strandat 135.192 kb on - strandat 135.250 kb on - strand, within BACOVA_01481at 135.271 kb on + strand, within BACOVA_01481at 135.271 kb on + strand, within BACOVA_01481at 135.282 kb on + strand, within BACOVA_01481at 135.295 kb on + strand, within BACOVA_01481at 135.321 kb on - strandat 135.324 kb on + strandat 135.325 kb on - strandat 135.335 kb on - strandat 135.408 kb on + strandat 135.469 kb on - strandat 135.469 kb on - strandat 135.541 kb on + strand, within BACOVA_01482at 135.542 kb on - strand, within BACOVA_01482at 135.573 kb on - strand, within BACOVA_01482at 135.599 kb on + strand, within BACOVA_01482at 135.599 kb on + strand, within BACOVA_01482at 135.605 kb on + strand, within BACOVA_01482at 135.612 kb on + strand, within BACOVA_01482at 135.613 kb on - strand, within BACOVA_01482at 135.686 kb on + strand, within BACOVA_01482at 135.722 kb on - strandat 135.724 kb on + strandat 135.724 kb on + strandat 135.744 kb on + strandat 135.745 kb on - strandat 135.769 kb on - strandat 135.772 kb on + strandat 135.778 kb on + strandat 135.778 kb on + strandat 135.779 kb on - strandat 135.786 kb on + strandat 135.786 kb on + strandat 135.787 kb on - strandat 135.789 kb on - strandat 135.789 kb on - strandat 135.793 kb on + strandat 135.804 kb on - strandat 135.847 kb on + strandat 135.871 kb on + strandat 135.874 kb on + strandat 135.875 kb on - strandat 135.880 kb on + strandat 135.909 kb on - strandat 135.939 kb on + strandat 135.943 kb on - strandat 135.996 kb on + strandat 136.037 kb on + strandat 136.038 kb on - strandat 136.038 kb on - strandat 136.079 kb on + strandat 136.101 kb on + strand, within BACOVA_01483at 136.101 kb on + strand, within BACOVA_01483at 136.121 kb on + strand, within BACOVA_01483at 136.121 kb on + strand, within BACOVA_01483at 136.121 kb on + strand, within BACOVA_01483at 136.243 kb on - strand, within BACOVA_01483at 136.253 kb on + strand, within BACOVA_01483at 136.333 kb on - strand, within BACOVA_01483at 136.333 kb on - strand, within BACOVA_01483at 136.344 kb on - strand, within BACOVA_01483at 136.374 kb on - strand, within BACOVA_01483at 136.395 kb on - strand, within BACOVA_01483at 136.417 kb on + strand, within BACOVA_01483at 136.417 kb on + strand, within BACOVA_01483at 136.418 kb on - strand, within BACOVA_01483at 136.459 kb on + strand, within BACOVA_01483at 136.460 kb on - strand, within BACOVA_01483at 136.460 kb on - strand, within BACOVA_01483at 136.568 kb on + strand, within BACOVA_01483at 136.568 kb on + strand, within BACOVA_01483at 136.568 kb on + strand, within BACOVA_01483at 136.602 kb on - strand, within BACOVA_01483at 136.627 kb on + strand, within BACOVA_01483at 136.628 kb on - strand, within BACOVA_01483at 136.644 kb on + strand, within BACOVA_01483at 136.650 kb on - strand, within BACOVA_01483at 136.653 kb on + strand, within BACOVA_01483at 136.661 kb on + strand, within BACOVA_01483at 136.662 kb on - strand, within BACOVA_01483

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Per-strain Table

Position Strand Gene LocusTag Fraction Brucella 1 x (C) complex media
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134,502 + BACOVA_01480 0.20 +0.1
134,580 - BACOVA_01480 0.29 +0.0
134,588 + BACOVA_01480 0.30 -0.6
134,588 + BACOVA_01480 0.30 -0.8
134,588 + BACOVA_01480 0.30 +0.9
134,588 + BACOVA_01480 0.30 +0.3
134,589 - BACOVA_01480 0.30 +0.5
134,589 - BACOVA_01480 0.30 -0.5
134,637 + BACOVA_01480 0.36 +0.1
134,637 + BACOVA_01480 0.36 +0.7
134,638 - BACOVA_01480 0.36 +1.4
134,718 + BACOVA_01480 0.45 +0.7
134,718 + BACOVA_01480 0.45 +0.2
134,733 + BACOVA_01480 0.47 -0.1
134,744 - BACOVA_01480 0.48 -0.6
134,845 + BACOVA_01480 0.60 +0.6
134,855 - BACOVA_01480 0.61 -1.7
134,855 - BACOVA_01480 0.61 -0.8
134,855 - BACOVA_01480 0.61 +0.0
134,861 + BACOVA_01480 0.62 -0.5
134,961 + BACOVA_01480 0.74 -0.3
135,111 - +0.4
135,111 - -0.5
135,126 + +0.5
135,126 + +0.0
135,126 + +0.1
135,191 + -0.4
135,192 - -1.3
135,250 - BACOVA_01481 0.49 +0.1
135,271 + BACOVA_01481 0.68 -0.4
135,271 + BACOVA_01481 0.68 +0.5
135,282 + BACOVA_01481 0.77 +1.2
135,295 + BACOVA_01481 0.89 +0.6
135,321 - +0.7
135,324 + +0.7
135,325 - +0.9
135,335 - +0.3
135,408 + +0.2
135,469 - +0.0
135,469 - -0.6
135,541 + BACOVA_01482 0.19 +1.0
135,542 - BACOVA_01482 0.19 -0.1
135,573 - BACOVA_01482 0.33 -0.1
135,599 + BACOVA_01482 0.44 +0.6
135,599 + BACOVA_01482 0.44 +0.3
135,605 + BACOVA_01482 0.47 -1.3
135,612 + BACOVA_01482 0.50 +1.7
135,613 - BACOVA_01482 0.51 +0.3
135,686 + BACOVA_01482 0.83 +0.5
135,722 - -0.1
135,724 + +0.4
135,724 + -0.2
135,744 + +0.2
135,745 - +0.4
135,769 - -0.4
135,772 + -1.2
135,778 + -0.1
135,778 + +0.2
135,779 - -0.3
135,786 + -0.6
135,786 + -0.1
135,787 - +0.5
135,789 - +0.4
135,789 - -0.7
135,793 + -1.6
135,804 - -0.2
135,847 + -0.9
135,871 + +1.5
135,874 + -0.1
135,875 - +0.7
135,880 + +0.7
135,909 - -0.2
135,939 + +1.7
135,943 - +0.7
135,996 + +0.6
136,037 + +0.4
136,038 - -0.1
136,038 - +0.5
136,079 + -1.4
136,101 + BACOVA_01483 0.10 -0.3
136,101 + BACOVA_01483 0.10 -0.1
136,121 + BACOVA_01483 0.12 +0.9
136,121 + BACOVA_01483 0.12 -0.4
136,121 + BACOVA_01483 0.12 -0.3
136,243 - BACOVA_01483 0.23 -0.1
136,253 + BACOVA_01483 0.24 -1.9
136,333 - BACOVA_01483 0.31 -1.0
136,333 - BACOVA_01483 0.31 -0.4
136,344 - BACOVA_01483 0.32 -0.5
136,374 - BACOVA_01483 0.35 +0.7
136,395 - BACOVA_01483 0.37 +1.6
136,417 + BACOVA_01483 0.39 +0.4
136,417 + BACOVA_01483 0.39 -0.5
136,418 - BACOVA_01483 0.39 +1.5
136,459 + BACOVA_01483 0.43 +0.7
136,460 - BACOVA_01483 0.43 -1.3
136,460 - BACOVA_01483 0.43 -0.6
136,568 + BACOVA_01483 0.52 +0.0
136,568 + BACOVA_01483 0.52 +1.1
136,568 + BACOVA_01483 0.52 -0.8
136,602 - BACOVA_01483 0.56 -0.3
136,627 + BACOVA_01483 0.58 -1.0
136,628 - BACOVA_01483 0.58 -0.1
136,644 + BACOVA_01483 0.59 +0.9
136,650 - BACOVA_01483 0.60 -0.2
136,653 + BACOVA_01483 0.60 +0.4
136,661 + BACOVA_01483 0.61 +0.1
136,662 - BACOVA_01483 0.61 +0.2

Or see this region's nucleotide sequence