Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_01125

Experiment: Brucella 1 x (C) complex media

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_01122 and BACOVA_01123 are separated by 198 nucleotidesBACOVA_01123 and BACOVA_01124 are separated by 5 nucleotidesBACOVA_01124 and BACOVA_01125 are separated by 44 nucleotidesBACOVA_01125 and BACOVA_01126 are separated by 0 nucleotides BACOVA_01122: BACOVA_01122 - hypothetical protein, at 74,388 to 74,495 _01122 BACOVA_01123: BACOVA_01123 - outer membrane insertion signal domain protein, at 74,694 to 75,272 _01123 BACOVA_01124: BACOVA_01124 - hypothetical protein, at 75,278 to 75,382 _01124 BACOVA_01125: BACOVA_01125 - ABC-2 type transporter, at 75,427 to 76,686 _01125 BACOVA_01126: BACOVA_01126 - ABC-2 type transporter, at 76,687 to 77,868 _01126 Position (kb) 75 76 77Strain fitness (log2 ratio) -2 -1 0 1 2at 74.481 kb on - strand, within BACOVA_01122at 74.481 kb on - strand, within BACOVA_01122at 74.483 kb on - strand, within BACOVA_01122at 74.483 kb on - strand, within BACOVA_01122at 74.497 kb on - strandat 74.503 kb on + strandat 74.520 kb on - strandat 74.578 kb on + strandat 74.621 kb on + strandat 74.646 kb on + strandat 74.647 kb on - strandat 74.650 kb on - strandat 74.650 kb on - strandat 74.653 kb on + strandat 74.653 kb on + strandat 74.654 kb on - strandat 74.729 kb on - strandat 74.744 kb on + strandat 74.755 kb on - strand, within BACOVA_01123at 74.786 kb on + strand, within BACOVA_01123at 74.786 kb on + strand, within BACOVA_01123at 74.787 kb on - strand, within BACOVA_01123at 74.798 kb on + strand, within BACOVA_01123at 74.805 kb on - strand, within BACOVA_01123at 74.805 kb on - strand, within BACOVA_01123at 74.819 kb on + strand, within BACOVA_01123at 74.863 kb on - strand, within BACOVA_01123at 74.876 kb on + strand, within BACOVA_01123at 74.876 kb on + strand, within BACOVA_01123at 74.885 kb on + strand, within BACOVA_01123at 74.885 kb on + strand, within BACOVA_01123at 74.953 kb on - strand, within BACOVA_01123at 75.008 kb on + strand, within BACOVA_01123at 75.008 kb on + strand, within BACOVA_01123at 75.031 kb on - strand, within BACOVA_01123at 75.031 kb on - strand, within BACOVA_01123at 75.143 kb on - strand, within BACOVA_01123at 75.154 kb on - strand, within BACOVA_01123at 75.164 kb on + strand, within BACOVA_01123at 75.173 kb on + strand, within BACOVA_01123at 75.256 kb on + strandat 75.261 kb on + strandat 75.279 kb on + strandat 75.279 kb on + strandat 75.280 kb on - strandat 75.281 kb on + strandat 75.282 kb on - strandat 75.290 kb on + strand, within BACOVA_01124at 75.292 kb on + strand, within BACOVA_01124at 75.293 kb on - strand, within BACOVA_01124at 75.295 kb on + strand, within BACOVA_01124at 75.295 kb on + strand, within BACOVA_01124at 75.296 kb on - strand, within BACOVA_01124at 75.316 kb on + strand, within BACOVA_01124at 75.317 kb on - strand, within BACOVA_01124at 75.317 kb on - strand, within BACOVA_01124at 75.317 kb on - strand, within BACOVA_01124at 75.317 kb on - strand, within BACOVA_01124at 75.319 kb on - strand, within BACOVA_01124at 75.359 kb on - strand, within BACOVA_01124at 75.375 kb on + strandat 75.415 kb on - strandat 75.422 kb on - strandat 75.428 kb on + strandat 75.437 kb on - strandat 75.448 kb on + strandat 75.484 kb on + strandat 75.485 kb on - strandat 75.522 kb on - strandat 75.573 kb on + strand, within BACOVA_01125at 75.573 kb on + strand, within BACOVA_01125at 75.574 kb on - strand, within BACOVA_01125at 75.587 kb on - strand, within BACOVA_01125at 75.587 kb on - strand, within BACOVA_01125at 75.594 kb on + strand, within BACOVA_01125at 75.595 kb on - strand, within BACOVA_01125at 75.665 kb on - strand, within BACOVA_01125at 75.665 kb on - strand, within BACOVA_01125at 75.668 kb on + strand, within BACOVA_01125at 75.757 kb on - strand, within BACOVA_01125at 75.783 kb on + strand, within BACOVA_01125at 75.807 kb on + strand, within BACOVA_01125at 75.838 kb on + strand, within BACOVA_01125at 75.841 kb on + strand, within BACOVA_01125at 75.841 kb on - strand, within BACOVA_01125at 75.873 kb on + strand, within BACOVA_01125at 75.893 kb on + strand, within BACOVA_01125at 75.894 kb on - strand, within BACOVA_01125at 75.894 kb on - strand, within BACOVA_01125at 75.902 kb on + strand, within BACOVA_01125at 75.916 kb on + strand, within BACOVA_01125at 75.917 kb on - strand, within BACOVA_01125at 75.918 kb on + strand, within BACOVA_01125at 75.919 kb on - strand, within BACOVA_01125at 75.919 kb on - strand, within BACOVA_01125at 75.932 kb on + strand, within BACOVA_01125at 75.953 kb on - strand, within BACOVA_01125at 75.961 kb on + strand, within BACOVA_01125at 75.962 kb on - strand, within BACOVA_01125at 75.991 kb on + strand, within BACOVA_01125at 76.002 kb on + strand, within BACOVA_01125at 76.055 kb on - strand, within BACOVA_01125at 76.075 kb on + strand, within BACOVA_01125at 76.142 kb on + strand, within BACOVA_01125at 76.142 kb on + strand, within BACOVA_01125at 76.142 kb on + strand, within BACOVA_01125at 76.147 kb on + strand, within BACOVA_01125at 76.154 kb on + strand, within BACOVA_01125at 76.261 kb on - strand, within BACOVA_01125at 76.262 kb on + strand, within BACOVA_01125at 76.263 kb on - strand, within BACOVA_01125at 76.266 kb on - strand, within BACOVA_01125at 76.268 kb on - strand, within BACOVA_01125at 76.268 kb on - strand, within BACOVA_01125at 76.323 kb on + strand, within BACOVA_01125at 76.347 kb on + strand, within BACOVA_01125at 76.349 kb on + strand, within BACOVA_01125at 76.349 kb on + strand, within BACOVA_01125at 76.349 kb on + strand, within BACOVA_01125at 76.350 kb on - strand, within BACOVA_01125at 76.356 kb on + strand, within BACOVA_01125at 76.356 kb on + strand, within BACOVA_01125at 76.361 kb on + strand, within BACOVA_01125at 76.379 kb on - strand, within BACOVA_01125at 76.412 kb on + strand, within BACOVA_01125at 76.444 kb on + strand, within BACOVA_01125at 76.449 kb on + strand, within BACOVA_01125at 76.457 kb on + strand, within BACOVA_01125at 76.468 kb on - strand, within BACOVA_01125at 76.489 kb on + strand, within BACOVA_01125at 76.539 kb on + strand, within BACOVA_01125at 76.539 kb on + strand, within BACOVA_01125at 76.540 kb on - strand, within BACOVA_01125at 76.541 kb on + strand, within BACOVA_01125at 76.542 kb on - strand, within BACOVA_01125at 76.558 kb on + strand, within BACOVA_01125at 76.558 kb on + strand, within BACOVA_01125at 76.559 kb on - strand, within BACOVA_01125at 76.632 kb on - strandat 76.632 kb on - strandat 76.676 kb on - strandat 76.676 kb on - strandat 76.688 kb on + strandat 76.694 kb on - strandat 76.694 kb on - strandat 76.697 kb on + strandat 76.697 kb on + strandat 76.697 kb on + strandat 76.697 kb on + strandat 76.698 kb on - strandat 76.698 kb on - strandat 76.702 kb on - strandat 76.706 kb on + strandat 76.707 kb on - strandat 76.707 kb on - strandat 76.755 kb on + strandat 76.762 kb on + strandat 76.775 kb on + strandat 76.775 kb on + strandat 76.775 kb on + strandat 76.775 kb on - strandat 76.776 kb on - strandat 76.797 kb on + strandat 76.798 kb on - strandat 76.800 kb on + strandat 76.801 kb on - strandat 76.801 kb on - strandat 76.887 kb on + strand, within BACOVA_01126at 76.888 kb on - strand, within BACOVA_01126at 76.927 kb on + strand, within BACOVA_01126at 77.014 kb on + strand, within BACOVA_01126at 77.059 kb on - strand, within BACOVA_01126at 77.092 kb on + strand, within BACOVA_01126at 77.092 kb on + strand, within BACOVA_01126at 77.092 kb on + strand, within BACOVA_01126at 77.093 kb on - strand, within BACOVA_01126at 77.105 kb on - strand, within BACOVA_01126at 77.106 kb on + strand, within BACOVA_01126at 77.107 kb on - strand, within BACOVA_01126at 77.107 kb on - strand, within BACOVA_01126at 77.113 kb on - strand, within BACOVA_01126at 77.126 kb on - strand, within BACOVA_01126at 77.176 kb on - strand, within BACOVA_01126at 77.176 kb on - strand, within BACOVA_01126at 77.186 kb on - strand, within BACOVA_01126at 77.249 kb on - strand, within BACOVA_01126at 77.249 kb on - strand, within BACOVA_01126at 77.283 kb on + strand, within BACOVA_01126at 77.283 kb on + strand, within BACOVA_01126at 77.284 kb on - strand, within BACOVA_01126at 77.284 kb on - strand, within BACOVA_01126at 77.288 kb on - strand, within BACOVA_01126at 77.291 kb on + strand, within BACOVA_01126at 77.294 kb on - strand, within BACOVA_01126at 77.301 kb on - strand, within BACOVA_01126at 77.320 kb on + strand, within BACOVA_01126at 77.321 kb on - strand, within BACOVA_01126at 77.354 kb on + strand, within BACOVA_01126at 77.362 kb on - strand, within BACOVA_01126at 77.455 kb on + strand, within BACOVA_01126at 77.480 kb on + strand, within BACOVA_01126at 77.481 kb on - strand, within BACOVA_01126at 77.487 kb on + strand, within BACOVA_01126at 77.587 kb on - strand, within BACOVA_01126at 77.617 kb on + strand, within BACOVA_01126at 77.617 kb on + strand, within BACOVA_01126at 77.617 kb on + strand, within BACOVA_01126at 77.618 kb on - strand, within BACOVA_01126at 77.658 kb on + strand, within BACOVA_01126

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Per-strain Table

Position Strand Gene LocusTag Fraction Brucella 1 x (C) complex media
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74,481 - BACOVA_01122 0.86 +0.3
74,481 - BACOVA_01122 0.86 +0.4
74,483 - BACOVA_01122 0.88 -1.0
74,483 - BACOVA_01122 0.88 -0.3
74,497 - -0.2
74,503 + +1.0
74,520 - -0.7
74,578 + +0.5
74,621 + -0.6
74,646 + -0.4
74,647 - +0.2
74,650 - +0.2
74,650 - +0.3
74,653 + +0.4
74,653 + +0.4
74,654 - -2.0
74,729 - +0.3
74,744 + +0.1
74,755 - BACOVA_01123 0.11 -0.4
74,786 + BACOVA_01123 0.16 +0.2
74,786 + BACOVA_01123 0.16 -0.2
74,787 - BACOVA_01123 0.16 +0.3
74,798 + BACOVA_01123 0.18 -1.1
74,805 - BACOVA_01123 0.19 -1.4
74,805 - BACOVA_01123 0.19 -0.6
74,819 + BACOVA_01123 0.22 -0.4
74,863 - BACOVA_01123 0.29 +0.9
74,876 + BACOVA_01123 0.31 -0.3
74,876 + BACOVA_01123 0.31 -0.5
74,885 + BACOVA_01123 0.33 -0.7
74,885 + BACOVA_01123 0.33 -0.2
74,953 - BACOVA_01123 0.45 +1.0
75,008 + BACOVA_01123 0.54 -1.1
75,008 + BACOVA_01123 0.54 -1.0
75,031 - BACOVA_01123 0.58 +0.4
75,031 - BACOVA_01123 0.58 -1.3
75,143 - BACOVA_01123 0.78 -0.8
75,154 - BACOVA_01123 0.79 -0.9
75,164 + BACOVA_01123 0.81 -0.1
75,173 + BACOVA_01123 0.83 -0.0
75,256 + -0.7
75,261 + -0.5
75,279 + +0.1
75,279 + -0.2
75,280 - -0.1
75,281 + +0.6
75,282 - +0.1
75,290 + BACOVA_01124 0.11 +0.3
75,292 + BACOVA_01124 0.13 +1.3
75,293 - BACOVA_01124 0.14 +0.6
75,295 + BACOVA_01124 0.16 -1.5
75,295 + BACOVA_01124 0.16 +0.7
75,296 - BACOVA_01124 0.17 -0.9
75,316 + BACOVA_01124 0.36 +0.6
75,317 - BACOVA_01124 0.37 -1.0
75,317 - BACOVA_01124 0.37 +0.7
75,317 - BACOVA_01124 0.37 +0.3
75,317 - BACOVA_01124 0.37 -1.7
75,319 - BACOVA_01124 0.39 -2.0
75,359 - BACOVA_01124 0.77 +0.2
75,375 + +0.4
75,415 - +1.9
75,422 - -0.6
75,428 + -0.3
75,437 - -1.2
75,448 + -0.5
75,484 + +0.7
75,485 - +1.3
75,522 - -0.6
75,573 + BACOVA_01125 0.12 +1.0
75,573 + BACOVA_01125 0.12 +1.8
75,574 - BACOVA_01125 0.12 +1.4
75,587 - BACOVA_01125 0.13 +1.5
75,587 - BACOVA_01125 0.13 -1.0
75,594 + BACOVA_01125 0.13 +1.1
75,595 - BACOVA_01125 0.13 +0.7
75,665 - BACOVA_01125 0.19 +0.9
75,665 - BACOVA_01125 0.19 +1.7
75,668 + BACOVA_01125 0.19 +1.1
75,757 - BACOVA_01125 0.26 +1.4
75,783 + BACOVA_01125 0.28 +0.3
75,807 + BACOVA_01125 0.30 -0.4
75,838 + BACOVA_01125 0.33 +1.3
75,841 + BACOVA_01125 0.33 +0.6
75,841 - BACOVA_01125 0.33 +0.8
75,873 + BACOVA_01125 0.35 +0.9
75,893 + BACOVA_01125 0.37 +0.3
75,894 - BACOVA_01125 0.37 +2.3
75,894 - BACOVA_01125 0.37 +1.2
75,902 + BACOVA_01125 0.38 +1.6
75,916 + BACOVA_01125 0.39 +1.1
75,917 - BACOVA_01125 0.39 -0.1
75,918 + BACOVA_01125 0.39 +0.4
75,919 - BACOVA_01125 0.39 +2.3
75,919 - BACOVA_01125 0.39 +2.0
75,932 + BACOVA_01125 0.40 +0.4
75,953 - BACOVA_01125 0.42 +0.4
75,961 + BACOVA_01125 0.42 +1.7
75,962 - BACOVA_01125 0.42 -0.1
75,991 + BACOVA_01125 0.45 -0.5
76,002 + BACOVA_01125 0.46 -0.3
76,055 - BACOVA_01125 0.50 -0.5
76,075 + BACOVA_01125 0.51 +1.0
76,142 + BACOVA_01125 0.57 +0.5
76,142 + BACOVA_01125 0.57 +1.2
76,142 + BACOVA_01125 0.57 +1.4
76,147 + BACOVA_01125 0.57 +0.7
76,154 + BACOVA_01125 0.58 -0.1
76,261 - BACOVA_01125 0.66 +0.4
76,262 + BACOVA_01125 0.66 +1.8
76,263 - BACOVA_01125 0.66 +0.9
76,266 - BACOVA_01125 0.67 +0.4
76,268 - BACOVA_01125 0.67 +0.3
76,268 - BACOVA_01125 0.67 +1.2
76,323 + BACOVA_01125 0.71 +1.7
76,347 + BACOVA_01125 0.73 +1.1
76,349 + BACOVA_01125 0.73 +0.7
76,349 + BACOVA_01125 0.73 -0.6
76,349 + BACOVA_01125 0.73 +0.5
76,350 - BACOVA_01125 0.73 +0.0
76,356 + BACOVA_01125 0.74 +1.2
76,356 + BACOVA_01125 0.74 +1.4
76,361 + BACOVA_01125 0.74 +0.3
76,379 - BACOVA_01125 0.76 +1.4
76,412 + BACOVA_01125 0.78 +0.8
76,444 + BACOVA_01125 0.81 +1.1
76,449 + BACOVA_01125 0.81 +0.4
76,457 + BACOVA_01125 0.82 +0.2
76,468 - BACOVA_01125 0.83 +1.2
76,489 + BACOVA_01125 0.84 +0.9
76,539 + BACOVA_01125 0.88 +0.1
76,539 + BACOVA_01125 0.88 +1.5
76,540 - BACOVA_01125 0.88 -0.4
76,541 + BACOVA_01125 0.88 +1.0
76,542 - BACOVA_01125 0.88 +1.9
76,558 + BACOVA_01125 0.90 +1.3
76,558 + BACOVA_01125 0.90 +0.2
76,559 - BACOVA_01125 0.90 -1.1
76,632 - +0.3
76,632 - +0.5
76,676 - -0.4
76,676 - -0.1
76,688 + +0.9
76,694 - -0.1
76,694 - +1.0
76,697 + +1.3
76,697 + +1.3
76,697 + +0.6
76,697 + +0.7
76,698 - +0.4
76,698 - +1.6
76,702 - +0.9
76,706 + +0.8
76,707 - -0.2
76,707 - +2.1
76,755 + +1.0
76,762 + +0.5
76,775 + +0.8
76,775 + +0.3
76,775 + +0.3
76,775 - +0.5
76,776 - +1.3
76,797 + +1.4
76,798 - +0.4
76,800 + +0.5
76,801 - +0.7
76,801 - +0.8
76,887 + BACOVA_01126 0.17 +0.6
76,888 - BACOVA_01126 0.17 +1.0
76,927 + BACOVA_01126 0.20 +0.6
77,014 + BACOVA_01126 0.28 +0.8
77,059 - BACOVA_01126 0.31 +1.6
77,092 + BACOVA_01126 0.34 +0.4
77,092 + BACOVA_01126 0.34 +1.3
77,092 + BACOVA_01126 0.34 +1.9
77,093 - BACOVA_01126 0.34 +0.5
77,105 - BACOVA_01126 0.35 +2.3
77,106 + BACOVA_01126 0.35 +0.9
77,107 - BACOVA_01126 0.36 +1.1
77,107 - BACOVA_01126 0.36 -0.5
77,113 - BACOVA_01126 0.36 +1.1
77,126 - BACOVA_01126 0.37 +1.6
77,176 - BACOVA_01126 0.41 +0.4
77,176 - BACOVA_01126 0.41 +1.0
77,186 - BACOVA_01126 0.42 +1.4
77,249 - BACOVA_01126 0.48 +1.7
77,249 - BACOVA_01126 0.48 +1.6
77,283 + BACOVA_01126 0.50 +1.6
77,283 + BACOVA_01126 0.50 +0.6
77,284 - BACOVA_01126 0.51 +1.6
77,284 - BACOVA_01126 0.51 -0.7
77,288 - BACOVA_01126 0.51 +1.3
77,291 + BACOVA_01126 0.51 +0.7
77,294 - BACOVA_01126 0.51 +1.1
77,301 - BACOVA_01126 0.52 +0.2
77,320 + BACOVA_01126 0.54 +1.0
77,321 - BACOVA_01126 0.54 -0.1
77,354 + BACOVA_01126 0.56 +0.5
77,362 - BACOVA_01126 0.57 -0.7
77,455 + BACOVA_01126 0.65 +1.0
77,480 + BACOVA_01126 0.67 +0.9
77,481 - BACOVA_01126 0.67 -0.5
77,487 + BACOVA_01126 0.68 +0.5
77,587 - BACOVA_01126 0.76 -0.3
77,617 + BACOVA_01126 0.79 +1.0
77,617 + BACOVA_01126 0.79 +1.7
77,617 + BACOVA_01126 0.79 +0.6
77,618 - BACOVA_01126 0.79 +1.0
77,658 + BACOVA_01126 0.82 +0.9

Or see this region's nucleotide sequence