Strain Fitness in Escherichia fergusonii Becca around EFB2_04392

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
4,611,290	-		EFB2_04390	0.50	-0.3
4,611,319	-		EFB2_04390	0.53	-0.5
4,611,319	-		EFB2_04390	0.53	-2.3
4,611,319	-		EFB2_04390	0.53	+0.5
4,611,322	+		EFB2_04390	0.54	+0.7
4,611,322	+		EFB2_04390	0.54	+0.5
4,611,322	+		EFB2_04390	0.54	+2.5
4,611,323	-		EFB2_04390	0.54	-0.2
4,611,323	-		EFB2_04390	0.54	+0.7
4,611,323	-		EFB2_04390	0.54	-1.6
4,611,323	-		EFB2_04390	0.54	+1.8
4,611,323	-		EFB2_04390	0.54	+1.3
4,611,323	-		EFB2_04390	0.54	+0.1
4,611,325	+		EFB2_04390	0.54	-0.4
4,611,326	-		EFB2_04390	0.54	-2.4
4,611,326	-		EFB2_04390	0.54	+0.5
4,611,353	+		EFB2_04390	0.57	+0.9
4,611,353	+		EFB2_04390	0.57	+1.6
4,611,353	+		EFB2_04390	0.57	+2.4
4,611,353	+		EFB2_04390	0.57	-3.4
4,611,353	+		EFB2_04390	0.57	-1.8
4,611,354	-		EFB2_04390	0.57	-2.0
4,611,354	-		EFB2_04390	0.57	+0.3
4,611,390	-		EFB2_04390	0.61	-0.1
4,611,398	+		EFB2_04390	0.62	+2.2
4,611,398	+		EFB2_04390	0.62	-0.1
4,611,398	+		EFB2_04390	0.62	+0.6
4,611,398	+		EFB2_04390	0.62	+1.6
4,611,421	+		EFB2_04390	0.65	+0.3
4,611,421	+		EFB2_04390	0.65	+0.5
4,611,421	+		EFB2_04390	0.65	+0.9
4,611,421	+		EFB2_04390	0.65	-1.5
4,611,421	+		EFB2_04390	0.65	+1.0
4,611,421	+		EFB2_04390	0.65	+1.0
4,611,422	-		EFB2_04390	0.65	+1.0
4,611,422	-		EFB2_04390	0.65	-0.3
4,611,437	+		EFB2_04390	0.67	-0.0
4,611,460	+		EFB2_04390	0.70	+1.4
4,611,488	-		EFB2_04390	0.73	-2.4
4,611,608	+		EFB2_04390	0.87	-1.2
4,611,608	+		EFB2_04390	0.87	-1.1
4,611,608	+		EFB2_04390	0.87	-2.9
4,611,608	+		EFB2_04390	0.87	-2.0
4,611,608	+		EFB2_04390	0.87	-0.7
4,611,608	+		EFB2_04390	0.87	-0.6
4,611,608	+		EFB2_04390	0.87	-0.1
4,611,608	+		EFB2_04390	0.87	+0.4
4,611,608	+		EFB2_04390	0.87	-0.1
4,611,608	+		EFB2_04390	0.87	+1.2
4,611,609	-		EFB2_04390	0.87	-3.3
4,611,609	-		EFB2_04390	0.87	-2.7
4,611,609	-		EFB2_04390	0.87	+0.7
4,611,609	-		EFB2_04390	0.87	-1.3
4,611,609	-		EFB2_04390	0.87	-3.5
4,611,609	-		EFB2_04390	0.87	-4.2
4,611,609	-		EFB2_04390	0.87	+1.3
4,611,609	-		EFB2_04390	0.87	+0.7
4,611,609	-		EFB2_04390	0.87	+1.6
4,611,609	-		EFB2_04390	0.87	+1.5
4,611,609	-		EFB2_04390	0.87	-3.3
4,611,609	-		EFB2_04390	0.87	+0.8
4,611,609	-		EFB2_04390	0.87	+0.6
4,611,609	-		EFB2_04390	0.87	+1.3
4,611,609	-		EFB2_04390	0.87	+0.9
4,611,609	-		EFB2_04390	0.87	-0.4
4,611,621	+		EFB2_04390	0.88	+0.3
4,611,622	-		EFB2_04390	0.88	-1.2
4,611,622	-		EFB2_04390	0.88	+0.2
4,611,631	+		EFB2_04390	0.89	+0.3
4,611,631	+		EFB2_04390	0.89	+0.7
4,611,631	+		EFB2_04390	0.89	+0.5
4,611,631	+		EFB2_04390	0.89	+0.8
4,611,632	-		EFB2_04390	0.89	+0.6
4,611,632	-		EFB2_04390	0.89	-0.3
4,611,632	-		EFB2_04390	0.89	-3.4
4,611,632	-		EFB2_04390	0.89	+0.4
4,611,663	+				-1.1
4,611,664	-				+1.4
4,611,664	-				-0.0
4,611,681	+				+1.2
4,611,681	+				+0.5
4,611,681	+				-1.2
4,611,681	+				+0.1
4,611,681	+				-0.4
4,611,681	+				-1.0
4,611,681	+				-0.1
4,611,681	+				+1.0
4,611,681	+				-2.9
4,611,681	+				+1.4
4,611,681	+				+1.1
4,611,681	+				-0.1
4,611,681	+				+1.5
4,611,681	+				-0.4
4,611,681	+				+1.1
4,611,681	+				+0.5
4,611,681	+				-0.0
4,611,681	+				-0.4
4,611,681	+				-0.8
4,611,681	+				-1.0
4,611,681	+				+0.2
4,611,681	+				+0.2
4,611,682	-				+1.9
4,611,682	-				+1.6
4,611,682	-				+1.6
4,611,682	-				-2.1
4,611,682	-				-1.0
4,611,682	-				+0.2
4,611,682	-				-3.8
4,611,682	-				-0.1
4,611,682	-				+0.6
4,611,682	-				+1.2
4,611,682	-				-3.0
4,611,682	-				-1.1
4,611,682	-				-3.6
4,611,682	-				+0.2
4,611,682	-				+0.4
4,611,682	-				+1.0
4,611,682	-				+0.5
4,611,682	-				+0.7
4,611,682	-				+1.0
4,611,682	-				+1.5
4,611,682	-				+1.6
4,611,682	-				+1.0
4,611,682	-				-3.6
4,611,682	-				+1.9
4,611,682	-				-1.2
4,611,682	-				-2.4
4,611,682	-				-0.9
4,611,722	+				+0.6
4,611,722	+				+0.3
4,611,722	+				+1.2
4,611,722	+				+0.7
4,611,722	+				-2.2
4,611,723	-				+0.2
4,611,723	-				+0.4
4,611,723	-				+0.1
4,611,723	-				+0.7
4,611,723	-				+0.4
4,611,737	+				-0.4
4,611,740	+				-0.4
4,611,740	+				-0.3
4,611,740	+				+1.9
4,611,740	+				-2.8
4,611,741	-				-1.9
4,611,754	+				-3.2
4,611,754	+				-1.3
4,611,754	+				+0.2
4,611,786	+				+1.0
4,611,788	+				-0.0
4,611,788	+				-1.2
4,611,788	+				-0.2
4,611,788	+				-1.1
4,611,788	+				-0.1
4,611,788	+				+1.6
4,611,788	+				+0.0
4,611,788	+				-0.4
4,611,788	+				+0.3
4,611,788	+				+0.8
4,611,788	+				+0.9
4,611,788	+				-0.8
4,611,788	+				+0.2
4,611,788	+				+3.2
4,611,788	+				-1.1
4,611,788	+				+0.9
4,611,788	+				-0.8
4,611,788	+				-1.2
4,611,788	+				-0.1
4,611,788	+				-1.7
4,611,788	+				-0.9
4,611,788	+				+0.9
4,611,788	+				-0.3
4,611,788	+				+0.1
4,611,788	+				-1.9
4,611,788	+				-1.2
4,611,788	+				-2.6
4,611,788	+				+0.7
4,611,788	+				-2.2
4,611,788	+				+0.8
4,611,788	+				+0.2
4,611,788	+				-1.0
4,611,788	+				+1.6
4,611,788	+				-0.2
4,611,788	+				-0.9
4,611,788	+				+0.5
4,611,788	+				-3.0
4,611,788	+				+0.4
4,611,788	+				+0.4
4,611,788	+				+1.0
4,611,788	+				-0.2
4,611,788	+				+2.8
4,611,788	+				+1.9
4,611,788	+				-0.1
4,611,788	+				+1.3
4,611,788	+				+0.6
4,611,788	+				+0.5
4,611,788	+				+0.8
4,611,788	+				-1.0
4,611,788	+				+0.9
4,611,788	+				+1.1
4,611,788	+				-0.0
4,611,788	+				+1.6
4,611,788	+				+1.5
4,611,788	+				-1.2
4,611,788	+				+0.9
4,611,788	+				-0.7
4,611,788	+				+1.9
4,611,788	+				-2.4
4,611,788	+				-0.3
4,611,788	+				+1.4
4,611,788	+				+1.2
4,611,788	+				+0.2
4,611,788	+				+1.8
4,611,788	+				-1.2
4,611,788	+				-0.5
4,611,788	+				+0.3
4,611,788	+				+1.4
4,611,788	+				+1.4
4,611,788	+				+0.5
4,611,788	+				+0.7
4,611,788	+				-1.8
4,611,788	+				+0.3
4,611,788	+				-0.6
4,611,788	+				+0.2
4,611,789	-				+1.7
4,611,789	-				-2.7
4,611,789	-				-3.0
4,611,789	-				-1.4
4,611,789	-				-1.0
4,611,789	-				+2.5
4,611,789	-				+0.1
4,611,789	-				+0.8
4,611,789	-				+0.6
4,611,789	-				+0.4
4,611,789	-				+0.6
4,611,789	-				-4.4
4,611,789	-				+0.5
4,611,789	-				+3.5
4,611,789	-				+1.1
4,611,789	-				-0.0
4,611,789	-				+0.3
4,611,789	-				-1.9
4,611,789	-				+0.2
4,611,789	-				+1.1
4,611,789	-				+1.0
4,611,789	-				-2.0
4,611,789	-				+0.2
4,611,789	-				-0.5
4,611,789	-				-2.8
4,611,789	-				-1.1
4,611,789	-				+1.5
4,611,789	-				-2.1
4,611,789	-				-1.1
4,611,789	-				+0.4
4,611,789	-				+1.1
4,611,789	-				+1.1
4,611,789	-				+0.5
4,611,789	-				-0.8
4,611,789	-				-0.7
4,611,789	-				+0.4
4,611,789	-				+1.1
4,611,789	-				-1.3
4,611,789	-				-2.5
4,611,789	-				+0.9
4,611,789	-				-0.6
4,611,789	-				-2.7
4,611,789	-				-1.7
4,611,789	-				+1.9
4,611,789	-				+1.4
4,611,789	-				-0.5
4,611,789	-				-1.8
4,611,789	-				+0.1
4,611,789	-				+0.9
4,611,789	-				-0.4
4,611,789	-				+0.4
4,611,789	-				-0.1
4,611,789	-				+0.7
4,611,789	-				-2.8
4,611,789	-				-1.0
4,611,789	-				+0.4
4,611,789	-				-1.7
4,611,789	-				+0.8
4,611,789	-				+0.7
4,611,789	-				+2.1
4,611,789	-				+0.5
4,611,789	-				-0.2
4,611,789	-				-1.2
4,611,789	-				+0.4
4,611,789	-				+0.2
4,611,789	-				-0.7
4,611,789	-				+0.2
4,611,789	-				-0.8
4,611,789	-				-2.4
4,611,789	-				+0.1
4,611,789	-				-0.5
4,611,789	-				+2.0
4,611,789	-				+0.5
4,611,790	+				+0.3
4,611,790	+				+0.4
4,611,790	+				-0.0
4,611,790	+				+0.1
4,611,790	+				+0.4
4,611,790	+				+1.2
4,611,790	+				+0.9
4,611,790	+				-0.0
4,611,790	+				+0.2
4,611,790	+				+1.7
4,611,790	+				-2.1
4,611,790	+				-0.3
4,611,790	+				+1.2
4,611,790	+				+0.9
4,611,790	+				-0.5
4,611,790	+				+0.5
4,611,790	+				+0.0
4,611,790	+				-1.0
4,611,790	+				-0.2
4,611,790	+				-0.9
4,611,790	+				+0.8
4,611,790	+				+0.1
4,611,790	+				+2.0
4,611,790	+				+1.1
4,611,790	+				-0.2
4,611,790	+				-0.6
4,611,790	+				-0.4
4,611,790	+				+1.1
4,611,790	+				-3.4
4,611,790	+				-0.2
4,611,790	+				-2.8
4,611,790	+				-3.4
4,611,791	-				-0.7
4,611,791	-				-0.4
4,611,791	-				-0.6
4,611,791	-				+0.5
4,611,791	-				-2.5
4,611,791	-				+0.1
4,611,791	-				+0.2
4,611,791	-				-1.2
4,611,791	-				-1.3
4,611,791	-				-1.8
4,611,791	-				-1.9
4,611,791	-				-1.2
4,611,791	-				+1.1
4,611,791	-				+0.3
4,611,791	-				-0.1
4,611,791	-				-2.5
4,611,791	-				-2.5
4,611,791	-				-0.5
4,611,791	-				+1.1
4,611,791	-				+0.2
4,611,791	-				-0.3
4,611,791	-				+1.5
4,611,791	-				+0.4
4,611,791	-				-0.3
4,611,791	-				-2.7
4,611,791	-				-0.3
4,611,791	-				-2.7
4,611,791	-				-0.1
4,611,791	-				-1.3
4,611,791	-				+0.8
4,611,791	-				+0.9
4,611,791	-				+0.2
4,611,791	-				-0.0
4,611,791	-				+0.1
4,611,791	-				+0.5
4,611,792	+				-1.2
4,611,792	+				+0.9
4,611,792	+				-1.1
4,611,792	+				+0.8
4,611,792	+				-0.6
4,611,792	+				-3.5
4,611,792	+				+0.5
4,611,792	+				+0.5
4,611,792	+				+0.7
4,611,792	+				-3.5
4,611,792	+				-0.1
4,611,792	+				-0.1
4,611,792	+				+0.7
4,611,792	+				-1.1
4,611,792	+				-0.2
4,611,792	+				+0.0
4,611,793	-				+0.6
4,611,793	-				+0.5
4,611,793	-				+2.2
4,611,793	-				+0.7
4,611,793	-				+0.9
4,611,793	-				+1.0
4,611,793	-				+0.2
4,611,793	-				-0.2
4,611,793	-				-1.4
4,611,793	-				-0.1
4,611,793	-				+0.9
4,611,793	-				+1.4
4,611,793	-				-2.8
4,611,793	-				+1.2
4,611,793	-				+0.1
4,611,793	-				+0.0
4,611,793	-				-0.3
4,611,865	+		EFB2_04391	0.26	-0.8
4,611,866	-		EFB2_04391	0.26	-0.1
4,611,866	-		EFB2_04391	0.26	-0.2
4,611,866	-		EFB2_04391	0.26	+1.0
4,611,926	+		EFB2_04391	0.43	+0.7
4,611,926	+		EFB2_04391	0.43	-0.6
4,611,926	+		EFB2_04391	0.43	-1.8
4,611,926	+		EFB2_04391	0.43	+0.8
4,611,926	+		EFB2_04391	0.43	+0.2
4,611,927	-		EFB2_04391	0.43	+0.6
4,611,927	-		EFB2_04391	0.43	+0.2
4,611,927	-		EFB2_04391	0.43	+1.7
4,611,927	-		EFB2_04391	0.43	-1.3
4,611,927	-		EFB2_04391	0.43	+1.2
4,611,927	-		EFB2_04391	0.43	+1.0
4,611,927	-		EFB2_04391	0.43	-1.1
4,611,974	+		EFB2_04391	0.56	+0.9
4,611,974	+		EFB2_04391	0.56	-3.5
4,611,974	+		EFB2_04391	0.56	+1.3
4,611,974	+		EFB2_04391	0.56	-0.6
4,611,974	+		EFB2_04391	0.56	+3.9
4,611,975	-		EFB2_04391	0.57	+0.2
4,611,975	-		EFB2_04391	0.57	+1.5
4,611,975	-		EFB2_04391	0.57	-0.1
4,611,975	-		EFB2_04391	0.57	+0.2
4,611,987	-		EFB2_04391	0.60	+1.0
4,611,987	-		EFB2_04391	0.60	+0.5
4,612,032	+		EFB2_04391	0.73	-0.2
4,612,032	+		EFB2_04391	0.73	+1.9
4,612,032	+		EFB2_04391	0.73	+0.3
4,612,032	+		EFB2_04391	0.73	-2.1
4,612,032	+		EFB2_04391	0.73	+0.6
4,612,032	+		EFB2_04391	0.73	+0.6
4,612,032	+		EFB2_04391	0.73	+0.6
4,612,033	-		EFB2_04391	0.73	+0.3
4,612,033	-		EFB2_04391	0.73	+1.0
4,612,033	-		EFB2_04391	0.73	+1.1
4,612,033	-		EFB2_04391	0.73	+0.9
4,612,033	-		EFB2_04391	0.73	+0.1
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