Strain Fitness in Escherichia fergusonii Becca around EFB2_04048

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
4,256,825	+		EFB2_04046	0.56	-1.4
4,256,825	+		EFB2_04046	0.56	-0.3
4,256,825	+		EFB2_04046	0.56	+0.1
4,256,825	+		EFB2_04046	0.56	+3.6
4,256,825	+		EFB2_04046	0.56	+0.4
4,256,826	-		EFB2_04046	0.56	-2.6
4,256,826	-		EFB2_04046	0.56	+1.5
4,256,826	-		EFB2_04046	0.56	-0.5
4,256,826	-		EFB2_04046	0.56	-2.6
4,256,826	-		EFB2_04046	0.56	-0.3
4,256,826	-		EFB2_04046	0.56	+0.2
4,256,893	+		EFB2_04046	0.66	+0.5
4,256,893	+		EFB2_04046	0.66	-1.0
4,256,893	+		EFB2_04046	0.66	-3.4
4,256,893	+		EFB2_04046	0.66	+1.1
4,256,893	+		EFB2_04046	0.66	+0.5
4,256,893	+		EFB2_04046	0.66	-3.4
4,256,894	-		EFB2_04046	0.66	-0.7
4,256,894	-		EFB2_04046	0.66	+1.6
4,256,894	-		EFB2_04046	0.66	+2.2
4,256,894	-		EFB2_04046	0.66	-1.8
4,256,894	-		EFB2_04046	0.66	+0.1
4,256,894	-		EFB2_04046	0.66	-2.8
4,256,894	-		EFB2_04046	0.66	+1.0
4,256,900	-		EFB2_04046	0.67	-2.0
4,256,921	-		EFB2_04046	0.70	-0.7
4,256,921	-		EFB2_04046	0.70	+0.4
4,256,921	-		EFB2_04046	0.70	-0.7
4,256,949	+		EFB2_04046	0.74	+0.6
4,256,949	+		EFB2_04046	0.74	-0.4
4,256,950	-		EFB2_04046	0.74	+1.1
4,257,065	+				-0.8
4,257,065	+				-0.7
4,257,065	+				+1.3
4,257,065	+				+1.3
4,257,065	+				-0.4
4,257,065	+				+1.5
4,257,065	+				-0.5
4,257,065	+				-0.2
4,257,066	-				+1.1
4,257,066	-				+0.7
4,257,066	-				-0.6
4,257,066	-				+0.4
4,257,066	-				-2.2
4,257,066	-				+0.4
4,257,066	-				-0.9
4,257,066	-				-0.3
4,257,066	-				+0.2
4,257,066	-				+1.0
4,257,066	-				-4.3
4,257,066	-				+1.3
4,257,104	-				+2.0
4,257,104	-				+0.3
4,257,126	+				+0.4
4,257,126	+				+1.4
4,257,126	+				-1.3
4,257,126	+				-1.4
4,257,126	+				+0.2
4,257,127	-				+0.8
4,257,127	-				-1.5
4,257,127	-				-2.8
4,257,127	-				+1.1
4,257,127	-				-0.2
4,257,140	+				-0.4
4,257,140	+				-0.6
4,257,141	-				+0.6
4,257,196	+		EFB2_04047	0.12	-0.5
4,257,196	+		EFB2_04047	0.12	-2.0
4,257,196	+		EFB2_04047	0.12	+0.4
4,257,196	+		EFB2_04047	0.12	-0.5
4,257,197	-		EFB2_04047	0.12	+0.4
4,257,197	-		EFB2_04047	0.12	-3.0
4,257,212	+		EFB2_04047	0.15	+0.6
4,257,212	+		EFB2_04047	0.15	+0.9
4,257,212	+		EFB2_04047	0.15	-0.5
4,257,212	+		EFB2_04047	0.15	+1.7
4,257,213	-		EFB2_04047	0.16	+1.3
4,257,213	-		EFB2_04047	0.16	+0.1
4,257,213	-		EFB2_04047	0.16	-0.8
4,257,213	-		EFB2_04047	0.16	-0.1
4,257,213	-		EFB2_04047	0.16	+1.9
4,257,240	+		EFB2_04047	0.21	+0.4
4,257,241	-		EFB2_04047	0.22	-1.0
4,257,248	+		EFB2_04047	0.23	+2.3
4,257,248	+		EFB2_04047	0.23	+1.0
4,257,249	-		EFB2_04047	0.23	-2.0
4,257,273	+		EFB2_04047	0.28	-0.2
4,257,273	+		EFB2_04047	0.28	+0.5
4,257,273	+		EFB2_04047	0.28	-2.0
4,257,273	+		EFB2_04047	0.28	+0.9
4,257,274	-		EFB2_04047	0.28	-0.5
4,257,274	-		EFB2_04047	0.28	+0.8
4,257,274	-		EFB2_04047	0.28	-0.0
4,257,274	-		EFB2_04047	0.28	-1.4
4,257,274	-		EFB2_04047	0.28	+0.8
4,257,274	-		EFB2_04047	0.28	-1.9
4,257,274	-		EFB2_04047	0.28	+2.0
4,257,301	+		EFB2_04047	0.34	+2.1
4,257,302	-		EFB2_04047	0.34	+0.8
4,257,302	-		EFB2_04047	0.34	+1.8
4,257,304	+		EFB2_04047	0.35	+1.2
4,257,304	+		EFB2_04047	0.35	+0.1
4,257,304	+		EFB2_04047	0.35	-2.4
4,257,304	+		EFB2_04047	0.35	-0.2
4,257,304	+		EFB2_04047	0.35	+0.4
4,257,304	+		EFB2_04047	0.35	-1.9
4,257,304	+		EFB2_04047	0.35	+0.4
4,257,305	-		EFB2_04047	0.35	-0.9
4,257,305	-		EFB2_04047	0.35	+1.3
4,257,305	-		EFB2_04047	0.35	-0.5
4,257,305	-		EFB2_04047	0.35	+0.5
4,257,305	-		EFB2_04047	0.35	-1.7
4,257,305	-		EFB2_04047	0.35	-1.3
4,257,305	-		EFB2_04047	0.35	+0.9
4,257,305	-		EFB2_04047	0.35	-2.9
4,257,331	-		EFB2_04047	0.41	-0.4
4,257,333	+		EFB2_04047	0.41	-1.0
4,257,333	+		EFB2_04047	0.41	-2.5
4,257,333	+		EFB2_04047	0.41	+0.1
4,257,390	+		EFB2_04047	0.53	-1.8
4,257,390	+		EFB2_04047	0.53	+0.7
4,257,390	+		EFB2_04047	0.53	-2.0
4,257,390	+		EFB2_04047	0.53	-2.8
4,257,390	+		EFB2_04047	0.53	+1.4
4,257,391	-		EFB2_04047	0.53	-1.2
4,257,391	-		EFB2_04047	0.53	+3.3
4,257,417	+		EFB2_04047	0.59	+0.0
4,257,417	+		EFB2_04047	0.59	+0.4
4,257,417	+		EFB2_04047	0.59	+0.4
4,257,418	-		EFB2_04047	0.59	+0.2
4,257,418	-		EFB2_04047	0.59	-2.6
4,257,418	-		EFB2_04047	0.59	-2.4
4,257,418	-		EFB2_04047	0.59	-0.2
4,257,418	-		EFB2_04047	0.59	+0.7
4,257,418	-		EFB2_04047	0.59	-0.3
4,257,418	-		EFB2_04047	0.59	+0.0
4,257,418	-		EFB2_04047	0.59	+0.2
4,257,420	+		EFB2_04047	0.59	-0.9
4,257,420	+		EFB2_04047	0.59	+1.2
4,257,420	+		EFB2_04047	0.59	+0.7
4,257,420	+		EFB2_04047	0.59	+0.1
4,257,420	+		EFB2_04047	0.59	+0.2
4,257,420	+		EFB2_04047	0.59	-1.2
4,257,421	-		EFB2_04047	0.59	+1.7
4,257,446	+		EFB2_04047	0.65	-1.2
4,257,446	+		EFB2_04047	0.65	-0.2
4,257,446	+		EFB2_04047	0.65	-0.7
4,257,447	-		EFB2_04047	0.65	-2.3
4,257,447	-		EFB2_04047	0.65	+1.1
4,257,447	-		EFB2_04047	0.65	-1.1
4,257,447	-		EFB2_04047	0.65	-0.4
4,257,519	+		EFB2_04047	0.80	-0.9
4,257,520	-		EFB2_04047	0.80	-1.0
4,257,520	-		EFB2_04047	0.80	-0.4
4,257,520	-		EFB2_04047	0.80	-2.2
4,257,523	+		EFB2_04047	0.81	-1.2
4,257,523	+		EFB2_04047	0.81	-0.9
4,257,524	-		EFB2_04047	0.81	+0.1
4,257,524	-		EFB2_04047	0.81	+1.1
4,257,595	+				-0.5
4,257,606	-				-0.2
4,257,612	+				+0.5
4,257,627	+				-2.8
4,257,632	-				-0.2
4,257,635	-				-0.9
4,257,635	-				-0.2
4,257,635	-				+1.6
4,257,646	+				-2.4
4,257,646	+				-0.6
4,257,646	+				+0.5
4,257,647	-				+0.5
4,257,647	-				+0.7
4,257,659	+				-3.7
4,257,659	+				+1.0
4,257,663	+				-0.0
4,257,663	+				-2.2
4,257,663	+				+1.8
4,257,663	+				-1.8
4,257,668	+				-0.0
4,257,668	+				-3.8
4,257,669	-				-0.1
4,257,669	-				+0.9
4,257,669	-				+0.1
4,257,669	-				+0.6
4,257,714	+				+0.7
4,257,714	+				+0.5
4,257,714	+				-1.3
4,257,715	-				+1.2
4,257,715	-				-1.4
4,257,721	+				+0.1
4,257,729	+				-0.8
4,257,730	-				-3.0
4,257,730	-				+0.6
4,257,751	-				+1.9
4,257,751	-				+0.1
4,257,769	-				-0.5
4,257,769	-				-2.1
4,257,771	+				-3.4
4,257,772	-				-1.8
4,257,779	+				-1.1
4,257,779	+				+0.4
4,257,779	+				-0.9
4,257,779	+				-0.0
4,257,779	+				-0.6
4,257,780	-				-3.6
4,257,817	+				-0.2
4,257,817	+				-0.2
4,257,817	+				+1.6
4,257,818	-				+0.6
4,257,822	+				+0.2
4,257,822	+				+1.2
4,257,840	+				-2.5
4,257,841	-				+0.6
4,257,854	+				-1.3
4,257,854	+				+1.0
4,257,854	+				-0.2
4,257,854	+				+0.9
4,257,855	-				-2.4
4,257,855	-				+0.7
4,257,855	-				+0.5
4,257,902	+				-3.9
4,257,902	+				+0.9
4,257,902	+				+1.2
4,257,902	+				+0.8
4,257,902	+				-1.1
4,257,903	-				+0.8
4,257,903	-				-0.9
4,257,920	-		EFB2_04048	0.11	-3.1
4,257,920	-		EFB2_04048	0.11	+0.7
4,257,935	+		EFB2_04048	0.13	-1.4
4,257,935	+		EFB2_04048	0.13	-1.5
4,257,935	+		EFB2_04048	0.13	+0.1
4,257,935	+		EFB2_04048	0.13	-1.6
4,257,935	+		EFB2_04048	0.13	-1.6
4,257,935	+		EFB2_04048	0.13	-1.0
4,257,935	+		EFB2_04048	0.13	-0.2
4,257,936	-		EFB2_04048	0.13	-3.0
4,257,936	-		EFB2_04048	0.13	-0.1
4,257,936	-		EFB2_04048	0.13	+2.7
4,257,936	-		EFB2_04048	0.13	-0.1
4,257,936	-		EFB2_04048	0.13	-1.0
4,257,948	+		EFB2_04048	0.14	+0.9
4,257,969	+		EFB2_04048	0.17	+0.4
4,257,969	+		EFB2_04048	0.17	-0.8
4,257,969	+		EFB2_04048	0.17	+1.8
4,257,970	-		EFB2_04048	0.17	+0.4
4,257,970	-		EFB2_04048	0.17	-2.4
4,257,970	-		EFB2_04048	0.17	-2.1
4,257,970	-		EFB2_04048	0.17	+3.4
4,257,979	+		EFB2_04048	0.18	-3.3
4,257,980	-		EFB2_04048	0.18	+0.7
4,257,980	-		EFB2_04048	0.18	+0.8
4,257,980	-		EFB2_04048	0.18	+0.0
4,257,980	-		EFB2_04048	0.18	-3.9
4,257,980	-		EFB2_04048	0.18	-0.3
4,257,981	+		EFB2_04048	0.18	-1.5
4,257,981	+		EFB2_04048	0.18	-2.5
4,257,981	+		EFB2_04048	0.18	-0.3
4,257,981	+		EFB2_04048	0.18	-0.4
4,257,981	+		EFB2_04048	0.18	+0.7
4,257,981	+		EFB2_04048	0.18	+0.2
4,257,982	-		EFB2_04048	0.18	-0.1
4,257,982	-		EFB2_04048	0.18	+1.8
4,257,982	-		EFB2_04048	0.18	-1.1
4,258,019	+		EFB2_04048	0.23	-1.4
4,258,020	-		EFB2_04048	0.23	-0.3
4,258,086	+		EFB2_04048	0.30	+1.6
4,258,161	+		EFB2_04048	0.39	+0.3
4,258,194	+		EFB2_04048	0.43	+0.3
4,258,195	-		EFB2_04048	0.43	-0.5
4,258,195	-		EFB2_04048	0.43	+0.2
4,258,195	-		EFB2_04048	0.43	-0.3
4,258,227	+		EFB2_04048	0.46	+0.2
4,258,227	+		EFB2_04048	0.46	-1.8
4,258,228	-		EFB2_04048	0.47	-2.0
4,258,228	-		EFB2_04048	0.47	-2.0
4,258,245	+		EFB2_04048	0.49	-2.5
4,258,255	+		EFB2_04048	0.50	+0.6
4,258,255	+		EFB2_04048	0.50	+0.8
4,258,255	+		EFB2_04048	0.50	-0.0
4,258,255	+		EFB2_04048	0.50	-0.6
4,258,255	+		EFB2_04048	0.50	-2.4
4,258,255	+		EFB2_04048	0.50	+1.0
4,258,255	+		EFB2_04048	0.50	-0.6
4,258,255	+		EFB2_04048	0.50	-0.5
4,258,255	+		EFB2_04048	0.50	-0.8
4,258,256	-		EFB2_04048	0.50	-0.1
4,258,256	-		EFB2_04048	0.50	-0.0
4,258,256	-		EFB2_04048	0.50	+0.4
4,258,256	-		EFB2_04048	0.50	-1.3
4,258,256	-		EFB2_04048	0.50	-1.1
4,258,256	-		EFB2_04048	0.50	+0.8
4,258,256	-		EFB2_04048	0.50	-0.0
4,258,256	-		EFB2_04048	0.50	-0.1
4,258,256	-		EFB2_04048	0.50	+1.7
4,258,256	-		EFB2_04048	0.50	+0.1
4,258,256	-		EFB2_04048	0.50	+2.0
4,258,256	-		EFB2_04048	0.50	+0.6
4,258,256	-		EFB2_04048	0.50	-3.4
4,258,256	-		EFB2_04048	0.50	+1.6
4,258,256	-		EFB2_04048	0.50	-0.3
4,258,256	-		EFB2_04048	0.50	+1.5
4,258,256	-		EFB2_04048	0.50	+0.6
4,258,256	-		EFB2_04048	0.50	-0.3
4,258,357	+		EFB2_04048	0.61	+0.2
4,258,357	+		EFB2_04048	0.61	+0.9
4,258,358	-		EFB2_04048	0.61	-0.8
4,258,389	+		EFB2_04048	0.65	-2.0
4,258,414	+		EFB2_04048	0.68	-0.8
4,258,414	+		EFB2_04048	0.68	-4.0
4,258,414	+		EFB2_04048	0.68	+1.0
4,258,414	+		EFB2_04048	0.68	-0.2
4,258,414	+		EFB2_04048	0.68	-1.7
4,258,414	+		EFB2_04048	0.68	+0.2
4,258,415	-		EFB2_04048	0.68	-0.1
4,258,415	-		EFB2_04048	0.68	-1.8
4,258,415	-		EFB2_04048	0.68	+0.7
4,258,415	-		EFB2_04048	0.68	-0.2
4,258,415	-		EFB2_04048	0.68	-0.1
4,258,450	+		EFB2_04048	0.72	-1.0
4,258,450	+		EFB2_04048	0.72	+2.8
4,258,450	+		EFB2_04048	0.72	+1.0
4,258,450	+		EFB2_04048	0.72	-3.4
4,258,450	+		EFB2_04048	0.72	+0.4
4,258,450	+		EFB2_04048	0.72	-3.9
4,258,450	+		EFB2_04048	0.72	-1.1
4,258,450	+		EFB2_04048	0.72	-1.1
4,258,450	+		EFB2_04048	0.72	-0.3
4,258,450	+		EFB2_04048	0.72	-0.6
4,258,450	+		EFB2_04048	0.72	-3.6
4,258,450	+		EFB2_04048	0.72	-0.9
4,258,451	-		EFB2_04048	0.72	-0.7
4,258,451	-		EFB2_04048	0.72	+0.5
4,258,451	-		EFB2_04048	0.72	+0.6
4,258,451	-		EFB2_04048	0.72	-1.7
4,258,451	-		EFB2_04048	0.72	-2.8
4,258,451	-		EFB2_04048	0.72	+1.1
4,258,451	-		EFB2_04048	0.72	-1.1
4,258,451	-		EFB2_04048	0.72	-2.4
4,258,451	-		EFB2_04048	0.72	-0.4
4,258,451	-		EFB2_04048	0.72	+1.1
4,258,451	-		EFB2_04048	0.72	+0.8
4,258,454	+		EFB2_04048	0.73	-1.4
4,258,454	+		EFB2_04048	0.73	+0.4
4,258,454	+		EFB2_04048	0.73	+0.3
4,258,454	+		EFB2_04048	0.73	-0.6
4,258,454	+		EFB2_04048	0.73	-0.7
4,258,454	+		EFB2_04048	0.73	+1.5
4,258,454	+		EFB2_04048	0.73	+0.0
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4,259,582	-		EFB2_04050	0.37	+2.7
4,259,656	+		EFB2_04050	0.51	+1.2
4,259,656	+		EFB2_04050	0.51	-0.1
4,259,656	+		EFB2_04050	0.51	+0.9