Strain Fitness in Escherichia fergusonii Becca around EFB2_03727

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 2)
3,902,090	-				+4.3
3,902,106	+				+3.4
3,902,106	+				+2.5
3,902,134	+				+1.4
3,902,134	+				-0.4
3,902,134	+				+0.6
3,902,134	+				+1.4
3,902,134	+				-0.4
3,902,134	+				-1.1
3,902,135	-				+0.6
3,902,135	-				+2.3
3,902,135	-				+1.6
3,902,138	+				+1.9
3,902,139	-				+0.4
3,902,171	+				-3.0
3,902,172	-				+0.5
3,902,184	-				+1.2
3,902,276	+		EFB2_03726	0.16	-1.3
3,902,323	+		EFB2_03726	0.25	-0.8
3,902,323	+		EFB2_03726	0.25	+0.4
3,902,324	-		EFB2_03726	0.25	+1.8
3,902,372	+		EFB2_03726	0.33	-0.2
3,902,375	+		EFB2_03726	0.34	+1.9
3,902,419	-		EFB2_03726	0.42	+0.0
3,902,419	-		EFB2_03726	0.42	-0.5
3,902,420	+		EFB2_03726	0.42	-2.0
3,902,420	+		EFB2_03726	0.42	+2.0
3,902,420	+		EFB2_03726	0.42	+0.6
3,902,420	+		EFB2_03726	0.42	+1.4
3,902,420	+		EFB2_03726	0.42	+0.5
3,902,420	+		EFB2_03726	0.42	-0.5
3,902,420	+		EFB2_03726	0.42	+0.6
3,902,420	+		EFB2_03726	0.42	-3.7
3,902,421	-		EFB2_03726	0.42	+0.5
3,902,421	-		EFB2_03726	0.42	+0.8
3,902,421	-		EFB2_03726	0.42	-0.0
3,902,421	-		EFB2_03726	0.42	-0.1
3,902,421	-		EFB2_03726	0.42	-0.3
3,902,441	+		EFB2_03726	0.46	+0.4
3,902,441	+		EFB2_03726	0.46	-3.3
3,902,442	-		EFB2_03726	0.46	+0.5
3,902,442	-		EFB2_03726	0.46	-0.5
3,902,442	-		EFB2_03726	0.46	-1.1
3,902,456	-		EFB2_03726	0.48	-1.4
3,902,511	-		EFB2_03726	0.58	-0.5
3,902,511	-		EFB2_03726	0.58	-1.9
3,902,511	-		EFB2_03726	0.58	+2.1
3,902,534	+		EFB2_03726	0.62	-0.3
3,902,535	-		EFB2_03726	0.62	-0.1
3,902,566	+		EFB2_03726	0.68	-0.4
3,902,566	+		EFB2_03726	0.68	-2.4
3,902,566	+		EFB2_03726	0.68	-0.2
3,902,566	+		EFB2_03726	0.68	+1.8
3,902,566	+		EFB2_03726	0.68	+1.3
3,902,566	+		EFB2_03726	0.68	+1.1
3,902,566	+		EFB2_03726	0.68	-0.0
3,902,567	-		EFB2_03726	0.68	-2.3
3,902,567	-		EFB2_03726	0.68	+1.9
3,902,567	-		EFB2_03726	0.68	-0.2
3,902,567	-		EFB2_03726	0.68	-2.2
3,902,572	+		EFB2_03726	0.69	-0.8
3,902,572	+		EFB2_03726	0.69	+0.3
3,902,572	+		EFB2_03726	0.69	-1.4
3,902,573	-		EFB2_03726	0.69	+0.9
3,902,573	-		EFB2_03726	0.69	-1.8
3,902,573	-		EFB2_03726	0.69	-1.2
3,902,588	+		EFB2_03726	0.72	+0.8
3,902,588	+		EFB2_03726	0.72	-1.6
3,902,588	+		EFB2_03726	0.72	+0.5
3,902,588	+		EFB2_03726	0.72	-3.6
3,902,588	+		EFB2_03726	0.72	-0.7
3,902,588	+		EFB2_03726	0.72	+0.2
3,902,588	+		EFB2_03726	0.72	-0.1
3,902,588	+		EFB2_03726	0.72	-2.2
3,902,588	+		EFB2_03726	0.72	-1.7
3,902,588	+		EFB2_03726	0.72	+1.8
3,902,588	+		EFB2_03726	0.72	+0.3
3,902,588	+		EFB2_03726	0.72	-1.0
3,902,588	+		EFB2_03726	0.72	+0.8
3,902,588	+		EFB2_03726	0.72	-1.1
3,902,589	-		EFB2_03726	0.72	+0.8
3,902,589	-		EFB2_03726	0.72	+0.3
3,902,589	-		EFB2_03726	0.72	-0.9
3,902,589	-		EFB2_03726	0.72	-0.6
3,902,589	-		EFB2_03726	0.72	-0.2
3,902,589	-		EFB2_03726	0.72	-1.2
3,902,589	-		EFB2_03726	0.72	+1.8
3,902,589	-		EFB2_03726	0.72	-0.1
3,902,589	-		EFB2_03726	0.72	+0.5
3,902,589	-		EFB2_03726	0.72	+0.2
3,902,589	-		EFB2_03726	0.72	+0.1
3,902,589	-		EFB2_03726	0.72	-4.0
3,902,589	-		EFB2_03726	0.72	-2.4
3,902,589	-		EFB2_03726	0.72	+1.0
3,902,589	-		EFB2_03726	0.72	+1.9
3,902,589	-		EFB2_03726	0.72	-0.2
3,902,589	-		EFB2_03726	0.72	-2.5
3,902,589	-		EFB2_03726	0.72	-0.2
3,902,589	-		EFB2_03726	0.72	-2.2
3,902,593	+		EFB2_03726	0.73	+0.5
3,902,593	+		EFB2_03726	0.73	-0.1
3,902,593	+		EFB2_03726	0.73	-3.9
3,902,593	+		EFB2_03726	0.73	-0.7
3,902,593	+		EFB2_03726	0.73	+1.3
3,902,593	+		EFB2_03726	0.73	-0.4
3,902,593	+		EFB2_03726	0.73	+0.7
3,902,593	+		EFB2_03726	0.73	-0.6
3,902,593	+		EFB2_03726	0.73	+2.1
3,902,593	+		EFB2_03726	0.73	-1.2
3,902,593	+		EFB2_03726	0.73	+1.3
3,902,593	+		EFB2_03726	0.73	+0.9
3,902,593	+		EFB2_03726	0.73	-2.6
3,902,594	-		EFB2_03726	0.73	+0.2
3,902,594	-		EFB2_03726	0.73	-1.3
3,902,594	-		EFB2_03726	0.73	+1.4
3,902,594	-		EFB2_03726	0.73	+0.3
3,902,594	-		EFB2_03726	0.73	-0.5
3,902,594	-		EFB2_03726	0.73	+0.7
3,902,594	-		EFB2_03726	0.73	-1.6
3,902,594	-		EFB2_03726	0.73	+1.3
3,902,594	-		EFB2_03726	0.73	+0.5
3,902,644	+		EFB2_03726	0.82	-2.5
3,902,644	+		EFB2_03726	0.82	-1.5
3,902,644	+		EFB2_03726	0.82	-0.7
3,902,644	+		EFB2_03726	0.82	-0.0
3,902,645	-		EFB2_03726	0.82	-2.0
3,902,655	+		EFB2_03726	0.84	+1.1
3,902,655	+		EFB2_03726	0.84	+2.1
3,902,656	-		EFB2_03726	0.84	-2.4
3,902,673	-		EFB2_03726	0.87	-0.9
3,902,681	+		EFB2_03726	0.88	+1.5
3,902,681	+		EFB2_03726	0.88	-2.4
3,902,681	+		EFB2_03726	0.88	-0.2
3,902,681	+		EFB2_03726	0.88	-3.2
3,902,681	+		EFB2_03726	0.88	-1.3
3,902,681	+		EFB2_03726	0.88	-1.2
3,902,681	+		EFB2_03726	0.88	+1.4
3,902,681	+		EFB2_03726	0.88	-2.0
3,902,681	+		EFB2_03726	0.88	+0.8
3,902,681	+		EFB2_03726	0.88	-2.1
3,902,682	-		EFB2_03726	0.88	-2.2
3,902,682	-		EFB2_03726	0.88	-0.7
3,902,682	-		EFB2_03726	0.88	+0.3
3,902,682	-		EFB2_03726	0.88	+0.6
3,902,682	-		EFB2_03726	0.88	+0.1
3,902,691	+				+1.1
3,902,691	+				-1.1
3,902,691	+				-1.2
3,902,691	+				-1.2
3,902,691	+				-1.3
3,902,692	-				+1.7
3,902,692	-				-1.4
3,902,692	-				-0.6
3,902,692	-				+0.2
3,902,692	-				-0.1
3,902,692	-				-1.3
3,902,692	-				-1.5
3,902,703	-				-2.5
3,902,703	-				+2.1
3,902,717	+				+1.4
3,902,717	+				+1.9
3,902,891	-				-0.2
3,902,934	+				+0.7
3,903,054	-				+0.9
3,903,054	-				+1.0
3,903,054	-				+1.1
3,903,094	+				+1.1
3,903,094	+				-2.1
3,903,095	-				+0.1
3,903,095	-				+0.6
3,903,095	-				-0.0
3,903,097	+				+0.5
3,903,098	-				+0.7
3,903,155	+				+0.4
3,903,155	+				-1.3
3,903,155	+				-2.6
3,903,155	+				-1.0
3,903,155	+				+1.0
3,903,155	+				+2.0
3,903,155	+				+0.3
3,903,155	+				-0.7
3,903,155	+				-0.3
3,903,155	+				+0.9
3,903,155	+				-0.8
3,903,155	+				-1.0
3,903,155	+				-0.7
3,903,155	+				+0.3
3,903,155	+				-1.7
3,903,155	+				-2.5
3,903,155	+				+0.0
3,903,156	-				-0.3
3,903,156	-				+0.2
3,903,156	-				+0.3
3,903,156	-				+2.4
3,903,156	-				+0.9
3,903,156	-				-2.8
3,903,156	-				+1.1
3,903,156	-				-2.4
3,903,156	-				-2.0
3,903,156	-				+1.6
3,903,156	-				+0.6
3,903,156	-				+0.6
3,903,156	-				+0.2
3,903,156	-				-4.1
3,903,156	-				+1.1
3,903,156	-				-0.9
3,903,156	-				-2.0
3,903,156	-				-0.4
3,903,156	-				+1.1
3,903,156	-				-0.4
3,903,157	+		EFB2_03727	0.10	+0.3
3,903,157	+		EFB2_03727	0.10	+0.3
3,903,157	+		EFB2_03727	0.10	+1.7
3,903,158	-		EFB2_03727	0.10	+0.0
3,903,158	-		EFB2_03727	0.10	-0.3
3,903,158	-		EFB2_03727	0.10	+0.1
3,903,170	+		EFB2_03727	0.12	+1.7
3,903,170	+		EFB2_03727	0.12	-1.5
3,903,170	+		EFB2_03727	0.12	-3.7
3,903,170	+		EFB2_03727	0.12	+1.8
3,903,171	-		EFB2_03727	0.12	-0.2
3,903,171	-		EFB2_03727	0.12	+1.0
3,903,171	-		EFB2_03727	0.12	+0.1
3,903,171	-		EFB2_03727	0.12	+0.1
3,903,171	-		EFB2_03727	0.12	+0.7
3,903,171	-		EFB2_03727	0.12	+1.0
3,903,184	+		EFB2_03727	0.13	-2.4
3,903,184	+		EFB2_03727	0.13	-2.5
3,903,185	-		EFB2_03727	0.14	+2.2
3,903,185	-		EFB2_03727	0.14	-2.2
3,903,185	-		EFB2_03727	0.14	-2.5
3,903,185	-		EFB2_03727	0.14	+1.9
3,903,185	-		EFB2_03727	0.14	+0.1
3,903,185	-		EFB2_03727	0.14	-3.9
3,903,185	-		EFB2_03727	0.14	-1.7
3,903,204	+		EFB2_03727	0.16	-0.1
3,903,204	+		EFB2_03727	0.16	+1.3
3,903,204	+		EFB2_03727	0.16	-2.7
3,903,204	+		EFB2_03727	0.16	+1.5
3,903,204	+		EFB2_03727	0.16	+1.3
3,903,205	-		EFB2_03727	0.16	+1.3
3,903,205	-		EFB2_03727	0.16	-2.4
3,903,221	+		EFB2_03727	0.18	-1.3
3,903,221	+		EFB2_03727	0.18	-1.7
3,903,222	-		EFB2_03727	0.18	+0.5
3,903,222	-		EFB2_03727	0.18	-0.2
3,903,228	+		EFB2_03727	0.19	-0.9
3,903,229	-		EFB2_03727	0.19	+1.4
3,903,229	-		EFB2_03727	0.19	-2.0
3,903,368	+		EFB2_03727	0.37	-3.0
3,903,368	+		EFB2_03727	0.37	+1.7
3,903,368	+		EFB2_03727	0.37	+0.0
3,903,369	-		EFB2_03727	0.37	+0.0
3,903,369	-		EFB2_03727	0.37	+1.2
3,903,369	-		EFB2_03727	0.37	+1.6
3,903,369	-		EFB2_03727	0.37	-1.0
3,903,369	-		EFB2_03727	0.37	-0.6
3,903,369	-		EFB2_03727	0.37	+0.7
3,903,369	-		EFB2_03727	0.37	-1.2
3,903,369	-		EFB2_03727	0.37	-2.5
3,903,369	-		EFB2_03727	0.37	-1.1
3,903,371	-		EFB2_03727	0.37	+1.3
3,903,428	-		EFB2_03727	0.44	+0.4
3,903,438	+		EFB2_03727	0.45	-1.9
3,903,460	+		EFB2_03727	0.48	-2.2
3,903,505	+		EFB2_03727	0.54	-0.8
3,903,505	+		EFB2_03727	0.54	+0.2
3,903,505	+		EFB2_03727	0.54	-0.5
3,903,505	+		EFB2_03727	0.54	+0.8
3,903,505	+		EFB2_03727	0.54	+2.4
3,903,506	-		EFB2_03727	0.54	+0.5
3,903,506	-		EFB2_03727	0.54	-0.4
3,903,506	-		EFB2_03727	0.54	+1.4
3,903,524	-		EFB2_03727	0.56	-2.2
3,903,524	-		EFB2_03727	0.56	+0.9
3,903,641	+		EFB2_03727	0.71	+1.0
3,903,641	+		EFB2_03727	0.71	+1.6
3,903,641	+		EFB2_03727	0.71	-2.7
3,903,641	+		EFB2_03727	0.71	-1.3
3,903,641	+		EFB2_03727	0.71	-1.1
3,903,641	+		EFB2_03727	0.71	+1.0
3,903,642	-		EFB2_03727	0.71	+1.1
3,903,642	-		EFB2_03727	0.71	-0.9
3,903,642	-		EFB2_03727	0.71	-2.1
3,903,676	+		EFB2_03727	0.75	-0.4
3,903,677	-		EFB2_03727	0.75	+1.4
3,903,677	-		EFB2_03727	0.75	-0.6
3,903,677	-		EFB2_03727	0.75	+1.0
3,903,677	-		EFB2_03727	0.75	+1.3
3,903,678	+		EFB2_03727	0.76	+0.4
3,903,678	+		EFB2_03727	0.76	-1.0
3,903,678	+		EFB2_03727	0.76	-1.0
3,903,678	+		EFB2_03727	0.76	-2.4
3,903,678	+		EFB2_03727	0.76	+0.6
3,903,678	+		EFB2_03727	0.76	-0.3
3,903,678	+		EFB2_03727	0.76	-0.4
3,903,678	+		EFB2_03727	0.76	-1.6
3,903,678	+		EFB2_03727	0.76	-0.9
3,903,679	-		EFB2_03727	0.76	-0.7
3,903,679	-		EFB2_03727	0.76	-3.6
3,903,679	-		EFB2_03727	0.76	+0.5
3,903,679	-		EFB2_03727	0.76	-0.7
3,903,679	-		EFB2_03727	0.76	-1.3
3,903,684	+		EFB2_03727	0.76	-0.6
3,903,684	+		EFB2_03727	0.76	-2.0
3,903,684	+		EFB2_03727	0.76	+1.0
3,903,684	+		EFB2_03727	0.76	-1.0
3,903,684	+		EFB2_03727	0.76	-1.7
3,903,685	-		EFB2_03727	0.76	+0.2
3,903,685	-		EFB2_03727	0.76	+1.1
3,903,685	-		EFB2_03727	0.76	-1.1
3,903,685	-		EFB2_03727	0.76	-0.4
3,903,685	-		EFB2_03727	0.76	-1.2
3,903,685	-		EFB2_03727	0.76	-0.4
3,903,685	-		EFB2_03727	0.76	+0.2
3,903,695	+		EFB2_03727	0.78	-3.2
3,903,695	+		EFB2_03727	0.78	-2.5
3,903,695	+		EFB2_03727	0.78	+0.3
3,903,695	+		EFB2_03727	0.78	-0.3
3,903,695	+		EFB2_03727	0.78	-0.1
3,903,696	-		EFB2_03727	0.78	+0.8
3,903,696	-		EFB2_03727	0.78	-0.3
3,903,696	-		EFB2_03727	0.78	-2.0
3,903,696	-		EFB2_03727	0.78	+0.6
3,903,696	-		EFB2_03727	0.78	+1.4
3,903,696	-		EFB2_03727	0.78	+1.7
3,903,696	-		EFB2_03727	0.78	+1.1
3,903,696	-		EFB2_03727	0.78	-0.6
3,903,696	-		EFB2_03727	0.78	+1.6
3,903,697	+		EFB2_03727	0.78	-4.8
3,903,697	+		EFB2_03727	0.78	+0.1
3,903,698	-		EFB2_03727	0.78	+2.8
3,903,731	+		EFB2_03727	0.82	+1.2
3,903,731	+		EFB2_03727	0.82	-3.7
3,903,731	+		EFB2_03727	0.82	-0.1
3,903,731	+		EFB2_03727	0.82	-1.9
3,903,731	+		EFB2_03727	0.82	+0.4
3,903,731	+		EFB2_03727	0.82	-3.2
3,903,731	+		EFB2_03727	0.82	-0.7
3,903,731	+		EFB2_03727	0.82	+0.6
3,903,731	+		EFB2_03727	0.82	-3.1
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